data_6GCX # _model_server_result.job_id dWdcLcjeRpmIFrhsBlpYgg _model_server_result.datetime_utc '2024-11-15 12:43:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gcx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6GCX # _exptl.entry_id 6GCX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 577.034 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[[2-[[4-[[[3,4-bis(oxidanylidene)-2-[2-(propanoylamino)ethylamino]cyclobuten-1-yl]amino]methyl]phenyl]amino]-5-chloranyl-pyrimidin-4-yl]amino]-~{N}-methyl-benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.5 _cell.angle_gamma 90 _cell.entry_id 6GCX _cell.length_a 45.868 _cell.length_b 47.172 _cell.length_c 63.432 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GCX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H29 Cl N8 O4' _chem_comp.formula_weight 577.034 _chem_comp.id EUW _chem_comp.mon_nstd_flag . _chem_comp.name 2-[[2-[[4-[[[3,4-bis(oxidanylidene)-2-[2-(propanoylamino)ethylamino]cyclobuten-1-yl]amino]methyl]phenyl]amino]-5-chloranyl-pyrimidin-4-yl]amino]-~{N}-methyl-benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBN NBM EUW sing 83 n n NBM CBK EUW sing 84 n n OBL CBK EUW doub 85 n n CBK CBF EUW sing 86 n n CL1 C5 EUW sing 87 n n C5 C6 EUW doub 88 n y C5 C4 EUW sing 89 n y C6 N1 EUW sing 90 n y CBF CBG EUW doub 91 n y CBF CBE EUW sing 92 n y NBD C4 EUW sing 93 n n NBD CBE EUW sing 94 n n C4 N3 EUW doub 95 n y CBG CBH EUW sing 96 n y N1 C2 EUW doub 97 n y CBE CBJ EUW doub 98 n y N3 C2 EUW sing 99 n y C2 NAG EUW sing 100 n n CBH CBI EUW doub 101 n y NAG CAH EUW sing 102 n n CBJ CBI EUW sing 103 n y CAM CAH EUW doub 104 n y CAM CAL EUW sing 105 n y CAH CAI EUW sing 106 n y CAL CAK EUW doub 107 n y CAI CAJ EUW doub 108 n y CAK CAJ EUW sing 109 n y CAK CAN EUW sing 110 n n OAT CAS EUW doub 111 n n CAN NAO EUW sing 112 n n CAS CAP EUW sing 113 n n CAS CAR EUW sing 114 n n NAO CAP EUW sing 115 n n CAP CAQ EUW doub 116 n n CAR OAU EUW doub 117 n n CAR CAQ EUW sing 118 n n CAQ NAV EUW sing 119 n n NAV CAW EUW sing 120 n n CAW CAX EUW sing 121 n n CAX NAY EUW sing 122 n n CBB CBA EUW sing 123 n n NAY CAZ EUW sing 124 n n CBA CAZ EUW sing 125 n n CAZ OBC EUW doub 126 n n C6 H1 EUW sing 127 n n CAI H2 EUW sing 128 n n CAJ H3 EUW sing 129 n n CAL H4 EUW sing 130 n n CAM H5 EUW sing 131 n n CAN H6 EUW sing 132 n n CAN H7 EUW sing 133 n n CAW H8 EUW sing 134 n n CAW H9 EUW sing 135 n n CAX H10 EUW sing 136 n n CAX H11 EUW sing 137 n n CBA H12 EUW sing 138 n n CBA H13 EUW sing 139 n n CBB H14 EUW sing 140 n n CBB H15 EUW sing 141 n n CBB H16 EUW sing 142 n n CBG H17 EUW sing 143 n n CBH H18 EUW sing 144 n n CBI H19 EUW sing 145 n n CBJ H20 EUW sing 146 n n CBN H21 EUW sing 147 n n CBN H22 EUW sing 148 n n CBN H23 EUW sing 149 n n NAG H24 EUW sing 150 n n NAO H25 EUW sing 151 n n NAV H26 EUW sing 152 n n NAY H27 EUW sing 153 n n NBD H28 EUW sing 154 n n NBM H29 EUW sing 155 n n # _atom_sites.entry_id 6GCX _atom_sites.fract_transf_matrix[1][1] 0.021802 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003259 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021199 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01594 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EUW A 1 701 1 EUW DRG . C 3 SO4 A 1 702 2 SO4 SO4 . D 3 SO4 A 1 703 3 SO4 SO4 . E 4 HOH A 1 801 156 HOH HOH . E 4 HOH A 2 802 260 HOH HOH . E 4 HOH A 3 803 51 HOH HOH . E 4 HOH A 4 804 163 HOH HOH . E 4 HOH A 5 805 133 HOH HOH . E 4 HOH A 6 806 145 HOH HOH . E 4 HOH A 7 807 263 HOH HOH . E 4 HOH A 8 808 39 HOH HOH . E 4 HOH A 9 809 253 HOH HOH . E 4 HOH A 10 810 13 HOH HOH . E 4 HOH A 11 811 137 HOH HOH . E 4 HOH A 12 812 62 HOH HOH . E 4 HOH A 13 813 198 HOH HOH . E 4 HOH A 14 814 66 HOH HOH . E 4 HOH A 15 815 174 HOH HOH . E 4 HOH A 16 816 110 HOH HOH . E 4 HOH A 17 817 134 HOH HOH . E 4 HOH A 18 818 36 HOH HOH . E 4 HOH A 19 819 266 HOH HOH . E 4 HOH A 20 820 3 HOH HOH . E 4 HOH A 21 821 40 HOH HOH . E 4 HOH A 22 822 104 HOH HOH . E 4 HOH A 23 823 7 HOH HOH . E 4 HOH A 24 824 153 HOH HOH . E 4 HOH A 25 825 258 HOH HOH . E 4 HOH A 26 826 63 HOH HOH . E 4 HOH A 27 827 100 HOH HOH . E 4 HOH A 28 828 12 HOH HOH . E 4 HOH A 29 829 210 HOH HOH . E 4 HOH A 30 830 102 HOH HOH . E 4 HOH A 31 831 147 HOH HOH . E 4 HOH A 32 832 165 HOH HOH . E 4 HOH A 33 833 86 HOH HOH . E 4 HOH A 34 834 58 HOH HOH . E 4 HOH A 35 835 37 HOH HOH . E 4 HOH A 36 836 262 HOH HOH . E 4 HOH A 37 837 59 HOH HOH . E 4 HOH A 38 838 19 HOH HOH . E 4 HOH A 39 839 9 HOH HOH . E 4 HOH A 40 840 105 HOH HOH . E 4 HOH A 41 841 230 HOH HOH . E 4 HOH A 42 842 22 HOH HOH . E 4 HOH A 43 843 24 HOH HOH . E 4 HOH A 44 844 64 HOH HOH . E 4 HOH A 45 845 17 HOH HOH . E 4 HOH A 46 846 42 HOH HOH . E 4 HOH A 47 847 126 HOH HOH . E 4 HOH A 48 848 92 HOH HOH . E 4 HOH A 49 849 45 HOH HOH . E 4 HOH A 50 850 44 HOH HOH . E 4 HOH A 51 851 158 HOH HOH . E 4 HOH A 52 852 95 HOH HOH . E 4 HOH A 53 853 187 HOH HOH . E 4 HOH A 54 854 85 HOH HOH . E 4 HOH A 55 855 106 HOH HOH . E 4 HOH A 56 856 56 HOH HOH . E 4 HOH A 57 857 31 HOH HOH . E 4 HOH A 58 858 46 HOH HOH . E 4 HOH A 59 859 34 HOH HOH . E 4 HOH A 60 860 259 HOH HOH . E 4 HOH A 61 861 70 HOH HOH . E 4 HOH A 62 862 49 HOH HOH . E 4 HOH A 63 863 175 HOH HOH . E 4 HOH A 64 864 41 HOH HOH . E 4 HOH A 65 865 233 HOH HOH . E 4 HOH A 66 866 55 HOH HOH . E 4 HOH A 67 867 135 HOH HOH . E 4 HOH A 68 868 2 HOH HOH . E 4 HOH A 69 869 128 HOH HOH . E 4 HOH A 70 870 101 HOH HOH . E 4 HOH A 71 871 10 HOH HOH . E 4 HOH A 72 872 11 HOH HOH . E 4 HOH A 73 873 130 HOH HOH . E 4 HOH A 74 874 75 HOH HOH . E 4 HOH A 75 875 265 HOH HOH . E 4 HOH A 76 876 4 HOH HOH . E 4 HOH A 77 877 148 HOH HOH . E 4 HOH A 78 878 61 HOH HOH . E 4 HOH A 79 879 254 HOH HOH . E 4 HOH A 80 880 161 HOH HOH . E 4 HOH A 81 881 132 HOH HOH . E 4 HOH A 82 882 16 HOH HOH . E 4 HOH A 83 883 65 HOH HOH . E 4 HOH A 84 884 30 HOH HOH . E 4 HOH A 85 885 72 HOH HOH . E 4 HOH A 86 886 8 HOH HOH . E 4 HOH A 87 887 123 HOH HOH . E 4 HOH A 88 888 180 HOH HOH . E 4 HOH A 89 889 15 HOH HOH . E 4 HOH A 90 890 264 HOH HOH . E 4 HOH A 91 891 43 HOH HOH . E 4 HOH A 92 892 60 HOH HOH . E 4 HOH A 93 893 23 HOH HOH . E 4 HOH A 94 894 238 HOH HOH . E 4 HOH A 95 895 117 HOH HOH . E 4 HOH A 96 896 240 HOH HOH . E 4 HOH A 97 897 14 HOH HOH . E 4 HOH A 98 898 21 HOH HOH . E 4 HOH A 99 899 172 HOH HOH . E 4 HOH A 100 900 69 HOH HOH . E 4 HOH A 101 901 114 HOH HOH . E 4 HOH A 102 902 29 HOH HOH . E 4 HOH A 103 903 234 HOH HOH . E 4 HOH A 104 904 141 HOH HOH . E 4 HOH A 105 905 32 HOH HOH . E 4 HOH A 106 906 252 HOH HOH . E 4 HOH A 107 907 113 HOH HOH . E 4 HOH A 108 908 47 HOH HOH . E 4 HOH A 109 909 6 HOH HOH . E 4 HOH A 110 910 57 HOH HOH . E 4 HOH A 111 911 77 HOH HOH . E 4 HOH A 112 912 27 HOH HOH . E 4 HOH A 113 913 166 HOH HOH . E 4 HOH A 114 914 247 HOH HOH . E 4 HOH A 115 915 120 HOH HOH . E 4 HOH A 116 916 119 HOH HOH . E 4 HOH A 117 917 33 HOH HOH . E 4 HOH A 118 918 115 HOH HOH . E 4 HOH A 119 919 103 HOH HOH . E 4 HOH A 120 920 76 HOH HOH . E 4 HOH A 121 921 48 HOH HOH . E 4 HOH A 122 922 28 HOH HOH . E 4 HOH A 123 923 208 HOH HOH . E 4 HOH A 124 924 248 HOH HOH . E 4 HOH A 125 925 129 HOH HOH . E 4 HOH A 126 926 38 HOH HOH . E 4 HOH A 127 927 221 HOH HOH . E 4 HOH A 128 928 116 HOH HOH . E 4 HOH A 129 929 5 HOH HOH . E 4 HOH A 130 930 157 HOH HOH . E 4 HOH A 131 931 127 HOH HOH . E 4 HOH A 132 932 52 HOH HOH . E 4 HOH A 133 933 249 HOH HOH . E 4 HOH A 134 934 237 HOH HOH . E 4 HOH A 135 935 203 HOH HOH . E 4 HOH A 136 936 239 HOH HOH . E 4 HOH A 137 937 241 HOH HOH . E 4 HOH A 138 938 261 HOH HOH . E 4 HOH A 139 939 25 HOH HOH . E 4 HOH A 140 940 142 HOH HOH . E 4 HOH A 141 941 155 HOH HOH . E 4 HOH A 142 942 243 HOH HOH . E 4 HOH A 143 943 53 HOH HOH . E 4 HOH A 144 944 173 HOH HOH . E 4 HOH A 145 945 226 HOH HOH . E 4 HOH A 146 946 176 HOH HOH . E 4 HOH A 147 947 18 HOH HOH . E 4 HOH A 148 948 235 HOH HOH . E 4 HOH A 149 949 169 HOH HOH . E 4 HOH A 150 950 88 HOH HOH . E 4 HOH A 151 951 191 HOH HOH . E 4 HOH A 152 952 121 HOH HOH . E 4 HOH A 153 953 183 HOH HOH . E 4 HOH A 154 954 250 HOH HOH . E 4 HOH A 155 955 67 HOH HOH . E 4 HOH A 156 956 98 HOH HOH . E 4 HOH A 157 957 154 HOH HOH . E 4 HOH A 158 958 189 HOH HOH . E 4 HOH A 159 959 54 HOH HOH . E 4 HOH A 160 960 181 HOH HOH . E 4 HOH A 161 961 178 HOH HOH . E 4 HOH A 162 962 188 HOH HOH . E 4 HOH A 163 963 159 HOH HOH . E 4 HOH A 164 964 185 HOH HOH . E 4 HOH A 165 965 143 HOH HOH . E 4 HOH A 166 966 149 HOH HOH . E 4 HOH A 167 967 35 HOH HOH . E 4 HOH A 168 968 125 HOH HOH . E 4 HOH A 169 969 107 HOH HOH . E 4 HOH A 170 970 171 HOH HOH . E 4 HOH A 171 971 146 HOH HOH . E 4 HOH A 172 972 236 HOH HOH . E 4 HOH A 173 973 124 HOH HOH . E 4 HOH A 174 974 196 HOH HOH . E 4 HOH A 175 975 256 HOH HOH . E 4 HOH A 176 976 140 HOH HOH . E 4 HOH A 177 977 184 HOH HOH . E 4 HOH A 178 978 218 HOH HOH . E 4 HOH A 179 979 109 HOH HOH . E 4 HOH A 180 980 139 HOH HOH . E 4 HOH A 181 981 50 HOH HOH . E 4 HOH A 182 982 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 EUW . . . B 2 -3.131 5.678 87.283 1 58.9 ? C4 EUW 701 A 1 HETATM 2 C C5 EUW . . . B 2 -4.128 6.397 86.633 1 65.85 ? C5 EUW 701 A 1 HETATM 3 C C6 EUW . . . B 2 -5.434 5.951 86.72 1 44.98 ? C6 EUW 701 A 1 HETATM 4 N N1 EUW . . . B 2 -5.706 4.795 87.465 1 30.83 ? N1 EUW 701 A 1 HETATM 5 N N3 EUW . . . B 2 -3.442 4.563 87.986 1 48.23 ? N3 EUW 701 A 1 HETATM 6 C C2 EUW . . . B 2 -4.72 4.129 88.083 1 39.97 ? C2 EUW 701 A 1 HETATM 7 C CAH EUW . . . B 2 -4.398 2.274 89.564 1 35.3 ? CAH EUW 701 A 1 HETATM 8 C CAI EUW . . . B 2 -5.132 1.541 90.494 1 38.82 ? CAI EUW 701 A 1 HETATM 9 C CAJ EUW . . . B 2 -4.506 0.697 91.392 1 42.02 ? CAJ EUW 701 A 1 HETATM 10 C CAK EUW . . . B 2 -3.124 0.572 91.366 1 45.93 ? CAK EUW 701 A 1 HETATM 11 C CAL EUW . . . B 2 -2.368 1.285 90.434 1 44.14 ? CAL EUW 701 A 1 HETATM 12 C CAM EUW . . . B 2 -3.009 2.136 89.527 1 37.57 ? CAM EUW 701 A 1 HETATM 13 C CAN EUW . . . B 2 -2.554 -0.304 92.275 1 57.5 ? CAN EUW 701 A 1 HETATM 14 C CAP EUW . . . B 2 -3.146 -2.473 93.1 1 78.09 ? CAP EUW 701 A 1 HETATM 15 C CAQ EUW . . . B 2 -2.717 -2.964 94.337 1 78.51 ? CAQ EUW 701 A 1 HETATM 16 C CAR EUW . . . B 2 -2.519 -4.22 93.764 1 80.27 ? CAR EUW 701 A 1 HETATM 17 C CAS EUW . . . B 2 -2.948 -3.733 92.536 1 79.13 ? CAS EUW 701 A 1 HETATM 18 C CAW EUW . . . B 2 -2.678 -1.012 95.624 1 68.79 ? CAW EUW 701 A 1 HETATM 19 C CAX EUW . . . B 2 -2.982 -0.504 97.031 1 69.12 ? CAX EUW 701 A 1 HETATM 20 C CAZ EUW . . . B 2 -4.851 0.592 98.175 1 70.09 ? CAZ EUW 701 A 1 HETATM 21 C CBA EUW . . . B 2 -6.33 0.979 98.105 1 64.73 ? CBA EUW 701 A 1 HETATM 22 C CBB EUW . . . B 2 -7.044 0.084 97.09 1 61.28 ? CBB EUW 701 A 1 HETATM 23 C CBE EUW . . . B 2 -0.833 5.556 87.661 1 53.51 ? CBE EUW 701 A 1 HETATM 24 C CBF EUW . . . B 2 0.199 5.172 86.792 1 48.81 ? CBF EUW 701 A 1 HETATM 25 C CBG EUW . . . B 2 1.315 4.528 87.328 1 47.07 ? CBG EUW 701 A 1 HETATM 26 C CBH EUW . . . B 2 1.411 4.281 88.695 1 47.52 ? CBH EUW 701 A 1 HETATM 27 C CBI EUW . . . B 2 0.386 4.676 89.548 1 43.64 ? CBI EUW 701 A 1 HETATM 28 C CBJ EUW . . . B 2 -0.732 5.317 89.031 1 48.72 ? CBJ EUW 701 A 1 HETATM 29 C CBK EUW . . . B 2 0.164 5.386 85.404 1 46.21 ? CBK EUW 701 A 1 HETATM 30 C CBN EUW . . . B 2 1.093 4.84 83.25 1 40.59 ? CBN EUW 701 A 1 HETATM 31 N NAG EUW . . . B 2 -5.132 3.039 88.746 1 38.94 ? NAG EUW 701 A 1 HETATM 32 N NAO EUW . . . B 2 -3.592 -1.3 92.635 1 71.12 ? NAO EUW 701 A 1 HETATM 33 N NAV EUW . . . B 2 -2.56 -2.477 95.575 1 72.88 ? NAV EUW 701 A 1 HETATM 34 N NAY EUW . . . B 2 -4.382 -0.06 97.104 1 69.97 ? NAY EUW 701 A 1 HETATM 35 N NBD EUW . . . B 2 -1.893 6.179 87.129 1 54.52 ? NBD EUW 701 A 1 HETATM 36 N NBM EUW . . . B 2 1.073 4.667 84.709 1 43.88 ? NBM EUW 701 A 1 HETATM 37 O OAT EUW . . . B 2 -3.09 -4.225 91.416 1 77.56 ? OAT EUW 701 A 1 HETATM 38 O OAU EUW . . . B 2 -2.124 -5.313 94.171 1 82.94 ? OAU EUW 701 A 1 HETATM 39 O OBC EUW . . . B 2 -4.165 0.87 99.158 1 75.25 ? OBC EUW 701 A 1 HETATM 40 O OBL EUW . . . B 2 -0.632 6.168 84.873 1 33.16 ? OBL EUW 701 A 1 HETATM 41 CL CL1 EUW . . . B 2 -3.749 7.824 85.719 1 92.16 ? CL1 EUW 701 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 41 #