data_6GD7 # _model_server_result.job_id LXUtuJ27M6ekCp3LXfXKMw _model_server_result.datetime_utc '2024-11-18 01:48:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gd7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6GD7 # _exptl.entry_id 6GD7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GD7 _cell.length_a 81.42 _cell.length_b 81.42 _cell.length_c 82.364 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GD7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 19 A CYS 14 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.725 ? covale ? covale2 A SG CYS 22 A CYS 17 1_555 B CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? metalc ? metalc1 A NE2 HIS 23 A HIS 18 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc2 A SD MET 85 A MET 80 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 281 n n C1 C2 GOL sing 282 n n C1 H11 GOL sing 283 n n C1 H12 GOL sing 284 n n O1 HO1 GOL sing 285 n n C2 O2 GOL sing 286 n n C2 C3 GOL sing 287 n n C2 H2 GOL sing 288 n n O2 HO2 GOL sing 289 n n C3 O3 GOL sing 290 n n C3 H31 GOL sing 291 n n C3 H32 GOL sing 292 n n O3 HO3 GOL sing 293 n n # _atom_sites.entry_id 6GD7 _atom_sites.fract_transf_matrix[1][1] 0.012282 _atom_sites.fract_transf_matrix[1][2] 0.007091 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 201 201 HEC HEM . C 3 EVB A 1 202 1 EVB SC8 . D 4 GOL A 1 203 2 GOL GOL . E 5 HOH A 1 301 22 HOH HOH . E 5 HOH A 2 302 131 HOH HOH . E 5 HOH A 3 303 7 HOH HOH . E 5 HOH A 4 304 144 HOH HOH . E 5 HOH A 5 305 81 HOH HOH . E 5 HOH A 6 306 135 HOH HOH . E 5 HOH A 7 307 174 HOH HOH . E 5 HOH A 8 308 130 HOH HOH . E 5 HOH A 9 309 109 HOH HOH . E 5 HOH A 10 310 156 HOH HOH . E 5 HOH A 11 311 89 HOH HOH . E 5 HOH A 12 312 103 HOH HOH . E 5 HOH A 13 313 100 HOH HOH . E 5 HOH A 14 314 5 HOH HOH . E 5 HOH A 15 315 94 HOH HOH . E 5 HOH A 16 316 34 HOH HOH . E 5 HOH A 17 317 175 HOH HOH . E 5 HOH A 18 318 162 HOH HOH . E 5 HOH A 19 319 64 HOH HOH . E 5 HOH A 20 320 117 HOH HOH . E 5 HOH A 21 321 50 HOH HOH . E 5 HOH A 22 322 116 HOH HOH . E 5 HOH A 23 323 14 HOH HOH . E 5 HOH A 24 324 43 HOH HOH . E 5 HOH A 25 325 49 HOH HOH . E 5 HOH A 26 326 85 HOH HOH . E 5 HOH A 27 327 113 HOH HOH . E 5 HOH A 28 328 86 HOH HOH . E 5 HOH A 29 329 166 HOH HOH . E 5 HOH A 30 330 54 HOH HOH . E 5 HOH A 31 331 75 HOH HOH . E 5 HOH A 32 332 88 HOH HOH . E 5 HOH A 33 333 32 HOH HOH . E 5 HOH A 34 334 84 HOH HOH . E 5 HOH A 35 335 161 HOH HOH . E 5 HOH A 36 336 65 HOH HOH . E 5 HOH A 37 337 31 HOH HOH . E 5 HOH A 38 338 47 HOH HOH . E 5 HOH A 39 339 79 HOH HOH . E 5 HOH A 40 340 19 HOH HOH . E 5 HOH A 41 341 165 HOH HOH . E 5 HOH A 42 342 10 HOH HOH . E 5 HOH A 43 343 12 HOH HOH . E 5 HOH A 44 344 69 HOH HOH . E 5 HOH A 45 345 58 HOH HOH . E 5 HOH A 46 346 36 HOH HOH . E 5 HOH A 47 347 57 HOH HOH . E 5 HOH A 48 348 98 HOH HOH . E 5 HOH A 49 349 154 HOH HOH . E 5 HOH A 50 350 126 HOH HOH . E 5 HOH A 51 351 77 HOH HOH . E 5 HOH A 52 352 25 HOH HOH . E 5 HOH A 53 353 83 HOH HOH . E 5 HOH A 54 354 28 HOH HOH . E 5 HOH A 55 355 97 HOH HOH . E 5 HOH A 56 356 2 HOH HOH . E 5 HOH A 57 357 9 HOH HOH . E 5 HOH A 58 358 125 HOH HOH . E 5 HOH A 59 359 73 HOH HOH . E 5 HOH A 60 360 67 HOH HOH . E 5 HOH A 61 361 62 HOH HOH . E 5 HOH A 62 362 29 HOH HOH . E 5 HOH A 63 363 11 HOH HOH . E 5 HOH A 64 364 46 HOH HOH . E 5 HOH A 65 365 6 HOH HOH . E 5 HOH A 66 366 68 HOH HOH . E 5 HOH A 67 367 56 HOH HOH . E 5 HOH A 68 368 137 HOH HOH . E 5 HOH A 69 369 120 HOH HOH . E 5 HOH A 70 370 172 HOH HOH . E 5 HOH A 71 371 33 HOH HOH . E 5 HOH A 72 372 99 HOH HOH . E 5 HOH A 73 373 74 HOH HOH . E 5 HOH A 74 374 26 HOH HOH . E 5 HOH A 75 375 118 HOH HOH . E 5 HOH A 76 376 66 HOH HOH . E 5 HOH A 77 377 139 HOH HOH . E 5 HOH A 78 378 150 HOH HOH . E 5 HOH A 79 379 27 HOH HOH . E 5 HOH A 80 380 39 HOH HOH . E 5 HOH A 81 381 138 HOH HOH . E 5 HOH A 82 382 44 HOH HOH . E 5 HOH A 83 383 48 HOH HOH . E 5 HOH A 84 384 16 HOH HOH . E 5 HOH A 85 385 149 HOH HOH . E 5 HOH A 86 386 71 HOH HOH . E 5 HOH A 87 387 132 HOH HOH . E 5 HOH A 88 388 4 HOH HOH . E 5 HOH A 89 389 92 HOH HOH . E 5 HOH A 90 390 37 HOH HOH . E 5 HOH A 91 391 136 HOH HOH . E 5 HOH A 92 392 91 HOH HOH . E 5 HOH A 93 393 108 HOH HOH . E 5 HOH A 94 394 63 HOH HOH . E 5 HOH A 95 395 146 HOH HOH . E 5 HOH A 96 396 24 HOH HOH . E 5 HOH A 97 397 15 HOH HOH . E 5 HOH A 98 398 40 HOH HOH . E 5 HOH A 99 399 13 HOH HOH . E 5 HOH A 100 400 95 HOH HOH . E 5 HOH A 101 401 18 HOH HOH . E 5 HOH A 102 402 119 HOH HOH . E 5 HOH A 103 403 115 HOH HOH . E 5 HOH A 104 404 152 HOH HOH . E 5 HOH A 105 405 21 HOH HOH . E 5 HOH A 106 406 23 HOH HOH . E 5 HOH A 107 407 41 HOH HOH . E 5 HOH A 108 408 55 HOH HOH . E 5 HOH A 109 409 17 HOH HOH . E 5 HOH A 110 410 96 HOH HOH . E 5 HOH A 111 411 80 HOH HOH . E 5 HOH A 112 412 78 HOH HOH . E 5 HOH A 113 413 157 HOH HOH . E 5 HOH A 114 414 170 HOH HOH . E 5 HOH A 115 415 101 HOH HOH . E 5 HOH A 116 416 52 HOH HOH . E 5 HOH A 117 417 90 HOH HOH . E 5 HOH A 118 418 176 HOH HOH . E 5 HOH A 119 419 87 HOH HOH . E 5 HOH A 120 420 112 HOH HOH . E 5 HOH A 121 421 42 HOH HOH . E 5 HOH A 122 422 45 HOH HOH . E 5 HOH A 123 423 1 HOH HOH . E 5 HOH A 124 424 169 HOH HOH . E 5 HOH A 125 425 159 HOH HOH . E 5 HOH A 126 426 110 HOH HOH . E 5 HOH A 127 427 30 HOH HOH . E 5 HOH A 128 428 3 HOH HOH . E 5 HOH A 129 429 107 HOH HOH . E 5 HOH A 130 430 143 HOH HOH . E 5 HOH A 131 431 38 HOH HOH . E 5 HOH A 132 432 82 HOH HOH . E 5 HOH A 133 433 124 HOH HOH . E 5 HOH A 134 434 76 HOH HOH . E 5 HOH A 135 435 177 HOH HOH . E 5 HOH A 136 436 105 HOH HOH . E 5 HOH A 137 437 178 HOH HOH . E 5 HOH A 138 438 104 HOH HOH . E 5 HOH A 139 439 171 HOH HOH . E 5 HOH A 140 440 8 HOH HOH . E 5 HOH A 141 441 20 HOH HOH . E 5 HOH A 142 442 121 HOH HOH . E 5 HOH A 143 443 59 HOH HOH . E 5 HOH A 144 444 151 HOH HOH . E 5 HOH A 145 445 106 HOH HOH . E 5 HOH A 146 446 182 HOH HOH . E 5 HOH A 147 447 173 HOH HOH . E 5 HOH A 148 448 61 HOH HOH . E 5 HOH A 149 449 127 HOH HOH . E 5 HOH A 150 450 163 HOH HOH . E 5 HOH A 151 451 93 HOH HOH . E 5 HOH A 152 452 180 HOH HOH . E 5 HOH A 153 453 102 HOH HOH . E 5 HOH A 154 454 133 HOH HOH . E 5 HOH A 155 455 51 HOH HOH . E 5 HOH A 156 456 129 HOH HOH . E 5 HOH A 157 457 145 HOH HOH . E 5 HOH A 158 458 53 HOH HOH . E 5 HOH A 159 459 60 HOH HOH . E 5 HOH A 160 460 70 HOH HOH . E 5 HOH A 161 461 141 HOH HOH . E 5 HOH A 162 462 142 HOH HOH . E 5 HOH A 163 463 179 HOH HOH . E 5 HOH A 164 464 147 HOH HOH . E 5 HOH A 165 465 114 HOH HOH . E 5 HOH A 166 466 153 HOH HOH . E 5 HOH A 167 467 35 HOH HOH . E 5 HOH A 168 468 72 HOH HOH . E 5 HOH A 169 469 140 HOH HOH . E 5 HOH A 170 470 168 HOH HOH . E 5 HOH A 171 471 128 HOH HOH . E 5 HOH A 172 472 123 HOH HOH . E 5 HOH A 173 473 181 HOH HOH . E 5 HOH A 174 474 148 HOH HOH . E 5 HOH A 175 475 167 HOH HOH . E 5 HOH A 176 476 155 HOH HOH . E 5 HOH A 177 477 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 31.695 19.777 -17.775 1 57.92 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . D 4 33.12 19.875 -17.846 1 55.32 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . D 4 31.025 21.139 -17.935 1 58.88 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . D 4 31.654 22.1 -17.082 1 59.54 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . D 4 31.108 21.605 -19.388 1 59.05 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . D 4 30.353 22.811 -19.59 1 58.49 ? O3 GOL 203 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #