data_6GD8 # _model_server_result.job_id cc6bvP2Kg8ueFW5mJzykDw _model_server_result.datetime_utc '2024-11-18 03:33:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gd8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":202}' # _entry.id 6GD8 # _exptl.entry_id 6GD8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 1489.481 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description sulfonato-calix[8]arene _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GD8 _cell.length_a 66.68 _cell.length_b 66.68 _cell.length_c 142.881 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GD8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,M 1 1 B,H,I,N 2 1 C,J,K,O 3 1 D,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 I N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 19 A CYS 14 1_555 E CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.724 ? covale ? covale2 A SG CYS 22 A CYS 17 1_555 E CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.739 ? covale ? covale3 B SG CYS 19 B CYS 14 1_555 H CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.713 ? covale ? covale4 B SG CYS 22 B CYS 17 1_555 H CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.732 ? covale ? covale5 C SG CYS 19 C CYS 14 1_555 J CAB HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.713 ? covale ? covale6 C SG CYS 19 C CYS 14 1_555 J CBB HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? covale ? covale7 C SG CYS 22 C CYS 17 1_555 J CAC HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.735 ? covale ? covale8 D SG CYS 19 D CYS 14 1_555 L CAB HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.709 ? covale ? covale9 D SG CYS 22 D CYS 17 1_555 L CAC HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.739 ? metalc ? metalc1 A NE2 HIS 23 A HIS 18 1_555 E FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc2 A SD MET 85 A MET 80 1_555 E FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc3 B NE2 HIS 23 B HIS 18 1_555 H FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc4 B SD MET 85 B MET 80 1_555 H FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc5 C NE2 HIS 23 C HIS 18 1_555 J FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc6 C SD MET 85 C MET 80 1_555 J FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc7 D NE2 HIS 23 D HIS 18 1_555 L FE HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc8 D SD MET 85 D MET 80 1_555 L FE HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? # _chem_comp.formula 'C56 H48 O32 S8' _chem_comp.formula_weight 1489.481 _chem_comp.id EVB _chem_comp.mon_nstd_flag . _chem_comp.name sulfonato-calix[8]arene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 S64 EVB doub 83 n n O9 S64 EVB doub 84 n n S64 O10 EVB sing 85 n n S64 C48 EVB sing 86 n n O12 S65 EVB doub 87 n n O13 S65 EVB doub 88 n n C49 C48 EVB doub 89 n y C49 C44 EVB sing 90 n y C48 C47 EVB sing 91 n y C42 C44 EVB sing 92 n n C42 C32 EVB sing 93 n n S65 C34 EVB sing 94 n n S65 O14 EVB sing 95 n n C33 C34 EVB doub 96 n y C33 C32 EVB sing 97 n y C44 C45 EVB doub 98 n y C34 C35 EVB sing 99 n y C32 C31 EVB doub 100 n y O15 S66 EVB doub 101 n n C47 C46 EVB doub 102 n y O17 S66 EVB doub 103 n n C45 C46 EVB sing 104 n y C45 O1 EVB sing 105 n n C35 C30 EVB doub 106 n y C31 O2 EVB sing 107 n n C31 C30 EVB sing 108 n y S66 C26 EVB sing 109 n n S66 O16 EVB sing 110 n n C46 C72 EVB sing 111 n n O32 S71 EVB doub 112 n n C27 C26 EVB doub 113 n y C27 C22 EVB sing 114 n y C14 C22 EVB sing 115 n n C14 C12 EVB sing 116 n n C26 C25 EVB sing 117 n y C22 C23 EVB doub 118 n y C30 C28 EVB sing 119 n n O30 S71 EVB doub 120 n n C25 C24 EVB doub 121 n y C23 C24 EVB sing 122 n y C23 O3 EVB sing 123 n n C24 C28 EVB sing 124 n n S71 C52 EVB sing 125 n n S71 O31 EVB sing 126 n n C53 C52 EVB doub 127 n y C53 C54 EVB sing 128 n y C12 C11 EVB doub 129 n y C12 C13 EVB sing 130 n y C52 C51 EVB sing 131 n y C72 C54 EVB sing 132 n n O19 S67 EVB doub 133 n n C54 C55 EVB doub 134 n y C11 C10 EVB sing 135 n y C51 C50 EVB doub 136 n y C55 C50 EVB sing 137 n y C55 O8 EVB sing 138 n n C50 C43 EVB sing 139 n n O4 C13 EVB sing 140 n n O23 S68 EVB doub 141 n n C43 C40 EVB sing 142 n n C13 C8 EVB doub 143 n y C15 C4 EVB sing 144 n n C15 C16 EVB sing 145 n n C10 S67 EVB sing 146 n n C10 C9 EVB doub 147 n y S67 O18 EVB doub 148 n n S67 O20 EVB sing 149 n n C4 C5 EVB doub 150 n y C4 C3 EVB sing 151 n y C5 C6 EVB sing 152 n y O5 C3 EVB sing 153 n n O7 C41 EVB sing 154 n n C3 C2 EVB doub 155 n y C8 C9 EVB sing 156 n y C8 C7 EVB sing 157 n n C16 C17 EVB doub 158 n y C16 C21 EVB sing 159 n y C6 S68 EVB sing 160 n n C6 C1 EVB doub 161 n y S68 O22 EVB doub 162 n n S68 O21 EVB sing 163 n n O6 C21 EVB sing 164 n n C40 C41 EVB doub 165 n y C40 C39 EVB sing 166 n y C2 C1 EVB sing 167 n y C2 C7 EVB sing 168 n n C17 C18 EVB sing 169 n y C21 C20 EVB doub 170 n y C41 C36 EVB sing 171 n y O26 S69 EVB doub 172 n n C39 C38 EVB doub 173 n y C18 S69 EVB sing 174 n n C18 C19 EVB doub 175 n y C20 C19 EVB sing 176 n y C20 C29 EVB sing 177 n n S69 O24 EVB doub 178 n n S69 O25 EVB sing 179 n n C36 C29 EVB sing 180 n n C36 C37 EVB doub 181 n y C38 C37 EVB sing 182 n y C38 S70 EVB sing 183 n n O29 S70 EVB doub 184 n n S70 O27 EVB doub 185 n n S70 O28 EVB sing 186 n n C11 H1 EVB sing 187 n n C14 H2 EVB sing 188 n n C14 H3 EVB sing 189 n n C15 H4 EVB sing 190 n n C15 H5 EVB sing 191 n n C17 H6 EVB sing 192 n n C19 H7 EVB sing 193 n n C1 H8 EVB sing 194 n n C5 H9 EVB sing 195 n n C7 H10 EVB sing 196 n n C7 H11 EVB sing 197 n n C9 H12 EVB sing 198 n n C25 H13 EVB sing 199 n n C27 H14 EVB sing 200 n n C28 H15 EVB sing 201 n n C28 H16 EVB sing 202 n n C29 H17 EVB sing 203 n n C29 H18 EVB sing 204 n n C33 H19 EVB sing 205 n n C35 H20 EVB sing 206 n n C37 H21 EVB sing 207 n n C39 H22 EVB sing 208 n n C42 H23 EVB sing 209 n n C42 H24 EVB sing 210 n n C43 H25 EVB sing 211 n n C43 H26 EVB sing 212 n n C47 H27 EVB sing 213 n n C49 H28 EVB sing 214 n n C51 H29 EVB sing 215 n n C53 H30 EVB sing 216 n n O1 H31 EVB sing 217 n n O2 H32 EVB sing 218 n n O3 H33 EVB sing 219 n n O4 H34 EVB sing 220 n n O5 H35 EVB sing 221 n n O6 H36 EVB sing 222 n n O7 H37 EVB sing 223 n n O8 H38 EVB sing 224 n n C72 H39 EVB sing 225 n n C72 H40 EVB sing 226 n n O14 H41 EVB sing 227 n n O16 H42 EVB sing 228 n n O20 H43 EVB sing 229 n n O21 H44 EVB sing 230 n n O10 H45 EVB sing 231 n n O31 H46 EVB sing 232 n n O28 H47 EVB sing 233 n n O25 H48 EVB sing 234 n n # _atom_sites.entry_id 6GD8 _atom_sites.fract_transf_matrix[1][1] 0.014997 _atom_sites.fract_transf_matrix[1][2] 0.008659 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017317 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006999 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEC A 1 201 201 HEC HEM . F 3 EVB A 1 202 2 EVB SC8 . G 3 EVB A 1 203 3 EVB SC8 . H 2 HEC B 1 201 201 HEC HEM . I 3 EVB B 1 202 1 EVB SC8 . J 2 HEC C 1 201 201 HEC HEM . K 3 EVB C 1 202 4 EVB SC8 . L 2 HEC D 1 201 201 HEC HEM . M 4 HOH A 1 301 37 HOH HOH . M 4 HOH A 2 302 15 HOH HOH . M 4 HOH A 3 303 19 HOH HOH . M 4 HOH A 4 304 18 HOH HOH . M 4 HOH A 5 305 17 HOH HOH . M 4 HOH A 6 306 32 HOH HOH . M 4 HOH A 7 307 24 HOH HOH . M 4 HOH A 8 308 16 HOH HOH . M 4 HOH A 9 309 34 HOH HOH . M 4 HOH A 10 310 29 HOH HOH . M 4 HOH A 11 311 41 HOH HOH . M 4 HOH A 12 312 33 HOH HOH . M 4 HOH A 13 313 30 HOH HOH . M 4 HOH A 14 314 28 HOH HOH . N 4 HOH B 1 301 2 HOH HOH . N 4 HOH B 2 302 1 HOH HOH . N 4 HOH B 3 303 7 HOH HOH . N 4 HOH B 4 304 8 HOH HOH . N 4 HOH B 5 305 6 HOH HOH . N 4 HOH B 6 306 4 HOH HOH . N 4 HOH B 7 307 5 HOH HOH . N 4 HOH B 8 308 27 HOH HOH . N 4 HOH B 9 309 36 HOH HOH . N 4 HOH B 10 310 11 HOH HOH . N 4 HOH B 11 311 3 HOH HOH . O 4 HOH C 1 301 23 HOH HOH . O 4 HOH C 2 302 25 HOH HOH . O 4 HOH C 3 303 38 HOH HOH . O 4 HOH C 4 304 40 HOH HOH . O 4 HOH C 5 305 22 HOH HOH . O 4 HOH C 6 306 21 HOH HOH . O 4 HOH C 7 307 26 HOH HOH . O 4 HOH C 8 308 20 HOH HOH . P 4 HOH D 1 301 35 HOH HOH . P 4 HOH D 2 302 39 HOH HOH . P 4 HOH D 3 303 14 HOH HOH . P 4 HOH D 4 304 12 HOH HOH . P 4 HOH D 5 305 31 HOH HOH . P 4 HOH D 6 306 9 HOH HOH . P 4 HOH D 7 307 13 HOH HOH . P 4 HOH D 8 308 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 EVB . . . K 3 90.676 79.489 -33.675 1 48.57 ? C11 EVB 202 C 1 HETATM 2 C C12 EVB . . . K 3 90.501 80.853 -33.918 1 49.13 ? C12 EVB 202 C 1 HETATM 3 C C13 EVB . . . K 3 91.309 81.515 -34.842 1 49.62 ? C13 EVB 202 C 1 HETATM 4 C C14 EVB . . . K 3 89.46 81.587 -33.105 1 48.91 ? C14 EVB 202 C 1 HETATM 5 C C22 EVB . . . K 3 88.225 82.064 -33.84 1 48.17 ? C22 EVB 202 C 1 HETATM 6 C C23 EVB . . . K 3 88.097 83.401 -34.201 1 47.92 ? C23 EVB 202 C 1 HETATM 7 C C7 EVB . . . K 3 93.148 81.487 -36.576 1 48.13 ? C7 EVB 202 C 1 HETATM 8 C C8 EVB . . . K 3 92.277 80.798 -35.547 1 48.86 ? C8 EVB 202 C 1 HETATM 9 C C9 EVB . . . K 3 92.444 79.427 -35.313 1 49.09 ? C9 EVB 202 C 1 HETATM 10 C C10 EVB . . . K 3 91.64 78.764 -34.371 1 48.42 ? C10 EVB 202 C 1 HETATM 11 C C24 EVB . . . K 3 86.956 83.834 -34.868 1 48.19 ? C24 EVB 202 C 1 HETATM 12 C C25 EVB . . . K 3 85.912 82.933 -35.123 1 46.36 ? C25 EVB 202 C 1 HETATM 13 C C26 EVB . . . K 3 86.022 81.585 -34.754 1 45.31 ? C26 EVB 202 C 1 HETATM 14 C C27 EVB . . . K 3 87.188 81.161 -34.104 1 47.07 ? C27 EVB 202 C 1 HETATM 15 C C28 EVB . . . K 3 86.791 85.294 -35.237 1 50.4 ? C28 EVB 202 C 1 HETATM 16 C C30 EVB . . . K 3 87.497 85.847 -36.456 1 52.93 ? C30 EVB 202 C 1 HETATM 17 C C31 EVB . . . K 3 88.824 86.281 -36.424 1 53.52 ? C31 EVB 202 C 1 HETATM 18 C C32 EVB . . . K 3 89.414 86.814 -37.561 1 54.91 ? C32 EVB 202 C 1 HETATM 19 C C33 EVB . . . K 3 88.672 86.938 -38.739 1 55.61 ? C33 EVB 202 C 1 HETATM 20 C C34 EVB . . . K 3 87.338 86.524 -38.775 1 56.28 ? C34 EVB 202 C 1 HETATM 21 C C35 EVB . . . K 3 86.751 85.99 -37.628 1 54.82 ? C35 EVB 202 C 1 HETATM 22 C C42 EVB . . . K 3 90.86 87.263 -37.524 1 54.6 ? C42 EVB 202 C 1 HETATM 23 O O2 EVB . . . K 3 89.571 86.178 -35.296 1 56.11 ? O2 EVB 202 C 1 HETATM 24 O O3 EVB . . . K 3 89.106 84.272 -33.921 1 46.82 ? O3 EVB 202 C 1 HETATM 25 O O4 EVB . . . K 3 91.139 82.852 -35.066 1 50.25 ? O4 EVB 202 C 1 HETATM 26 S S65 EVB . . . K 3 86.504 86.685 -40.125 1 59.23 ? S65 EVB 202 C 1 HETATM 27 S S66 EVB . . . K 3 84.827 80.554 -35.064 1 42.21 ? S66 EVB 202 C 1 HETATM 28 S S67 EVB . . . K 3 91.8 77.2 -34.058 1 45.9 ? S67 EVB 202 C 1 HETATM 29 O O12 EVB . . . K 3 86.534 88.112 -40.506 1 58.14 ? O12 EVB 202 C 1 HETATM 30 O O13 EVB . . . K 3 87.119 85.869 -41.197 1 61.03 ? O13 EVB 202 C 1 HETATM 31 O O14 EVB . . . K 3 85.087 86.284 -39.964 1 60.45 ? O14 EVB 202 C 1 HETATM 32 O O15 EVB . . . K 3 83.53 81.247 -34.894 1 42.74 ? O15 EVB 202 C 1 HETATM 33 O O16 EVB . . . K 3 84.915 80.072 -36.46 1 43.08 ? O16 EVB 202 C 1 HETATM 34 O O17 EVB . . . K 3 84.852 79.414 -34.124 1 39.34 ? O17 EVB 202 C 1 HETATM 35 O O18 EVB . . . K 3 90.48 76.565 -33.832 1 46.85 ? O18 EVB 202 C 1 HETATM 36 O O19 EVB . . . K 3 92.609 77.051 -32.837 1 43.95 ? O19 EVB 202 C 1 HETATM 37 O O20 EVB . . . K 3 92.479 76.521 -35.183 1 47.92 ? O20 EVB 202 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 37 #