data_6GD9
#
_model_server_result.job_id            pkSm8evwXafj25ZRD5Dk4g 
_model_server_result.datetime_utc      '2024-11-13 08:22:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gd9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":205}' 
#
_entry.id    6GD9 
#
_exptl.entry_id    6GD9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              238.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6GD9 
_cell.length_a            101.59 
_cell.length_b            101.59 
_cell.length_c            86.52 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GD9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 19 A CYS 14 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.627 ? 
covale ? covale2 A SG CYS 19 A CYS 14 1_555 B CBB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? 
covale ? covale3 A SG CYS 22 A CYS 17 1_555 B CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.655 ? 
metalc ? metalc1 A NE2 HIS 23 A HIS 18 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc2 A SD MET 85 A MET 80 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
#
_chem_comp.formula           'C8 H18 N2 O4 S' 
_chem_comp.formula_weight    238.305 
_chem_comp.id                EPE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEPES 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 EPE sing 83 n n 
N1 C6 EPE sing 84 n n 
N1 C9 EPE sing 85 n n 
C2 C3 EPE sing 86 n n 
C2 H21 EPE sing 87 n n 
C2 H22 EPE sing 88 n n 
C3 N4 EPE sing 89 n n 
C3 H31 EPE sing 90 n n 
C3 H32 EPE sing 91 n n 
N4 C5 EPE sing 92 n n 
N4 C7 EPE sing 93 n n 
C5 C6 EPE sing 94 n n 
C5 H51 EPE sing 95 n n 
C5 H52 EPE sing 96 n n 
C6 H61 EPE sing 97 n n 
C6 H62 EPE sing 98 n n 
C7 C8 EPE sing 99 n n 
C7 H71 EPE sing 100 n n 
C7 H72 EPE sing 101 n n 
C8 O8 EPE sing 102 n n 
C8 H81 EPE sing 103 n n 
C8 H82 EPE sing 104 n n 
O8 HO8 EPE sing 105 n n 
C9 C10 EPE sing 106 n n 
C9 H91 EPE sing 107 n n 
C9 H92 EPE sing 108 n n 
C10 S EPE sing 109 n n 
C10 H101 EPE sing 110 n n 
C10 H102 EPE sing 111 n n 
S O1S EPE doub 112 n n 
S O2S EPE doub 113 n n 
S O3S EPE sing 114 n n 
O3S HOS3 EPE sing 115 n n 
#
_atom_sites.entry_id                     6GD9 
_atom_sites.fract_transf_matrix[1][1]    0.009843 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009843 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011558 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEC A 1 201 118 HEC HEM . 
C 3 EVB A 1 202 1 EVB SC8 . 
D 3 EVB A 1 203 2 EVB SC8 . 
E 3 EVB A 1 204 3 EVB SC8 . 
F 4 EPE A 1 205 1 EPE EPE . 
G 4 EPE A 1 206 2 EPE EPE . 
H 4 EPE A 1 207 3 EPE EPE . 
I 4 EPE A 1 208 4 EPE EPE . 
J 5 SO4 A 1 209 1 SO4 SO4 . 
K 5 SO4 A 1 210 3 SO4 SO4 . 
L 5 SO4 A 1 211 4 SO4 SO4 . 
M 6 HOH A 1 301 37 HOH HOH . 
M 6 HOH A 2 302 16 HOH HOH . 
M 6 HOH A 3 303 7 HOH HOH . 
M 6 HOH A 4 304 21 HOH HOH . 
M 6 HOH A 5 305 12 HOH HOH . 
M 6 HOH A 6 306 30 HOH HOH . 
M 6 HOH A 7 307 17 HOH HOH . 
M 6 HOH A 8 308 2 HOH HOH . 
M 6 HOH A 9 309 27 HOH HOH . 
M 6 HOH A 10 310 18 HOH HOH . 
M 6 HOH A 11 311 34 HOH HOH . 
M 6 HOH A 12 312 14 HOH HOH . 
M 6 HOH A 13 313 29 HOH HOH . 
M 6 HOH A 14 314 9 HOH HOH . 
M 6 HOH A 15 315 11 HOH HOH . 
M 6 HOH A 16 316 3 HOH HOH . 
M 6 HOH A 17 317 15 HOH HOH . 
M 6 HOH A 18 318 36 HOH HOH . 
M 6 HOH A 19 319 28 HOH HOH . 
M 6 HOH A 20 320 6 HOH HOH . 
M 6 HOH A 21 321 1 HOH HOH . 
M 6 HOH A 22 322 8 HOH HOH . 
M 6 HOH A 23 323 10 HOH HOH . 
M 6 HOH A 24 324 13 HOH HOH . 
M 6 HOH A 25 325 5 HOH HOH . 
M 6 HOH A 26 326 4 HOH HOH . 
M 6 HOH A 27 327 35 HOH HOH . 
M 6 HOH A 28 328 25 HOH HOH . 
M 6 HOH A 29 329 33 HOH HOH . 
M 6 HOH A 30 330 19 HOH HOH . 
M 6 HOH A 31 331 22 HOH HOH . 
M 6 HOH A 32 332 20 HOH HOH . 
M 6 HOH A 33 333 23 HOH HOH . 
M 6 HOH A 34 334 24 HOH HOH . 
M 6 HOH A 35 335 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 EPE . . . F 4 -36.819 -16.948 3.848 1 86.76 ? N1 EPE 205 A 1 
HETATM 2 C C2 EPE . . . F 4 -36.734 -18.16 4.692 1 87.41 ? C2 EPE 205 A 1 
HETATM 3 C C3 EPE . . . F 4 -36.166 -19.334 3.898 1 87.18 ? C3 EPE 205 A 1 
HETATM 4 N N4 EPE . . . F 4 -34.756 -19.088 3.525 1 86.55 ? N4 EPE 205 A 1 
HETATM 5 C C5 EPE . . . F 4 -34.484 -17.641 3.375 1 86.57 ? C5 EPE 205 A 1 
HETATM 6 C C6 EPE . . . F 4 -35.716 -16.896 2.87 1 86.13 ? C6 EPE 205 A 1 
HETATM 7 C C7 EPE . . . F 4 -33.821 -19.7 4.498 1 85.25 ? C7 EPE 205 A 1 
HETATM 8 C C8 EPE . . . F 4 -33.174 -20.947 3.906 1 84.11 ? C8 EPE 205 A 1 
HETATM 9 O O8 EPE . . . F 4 -34.178 -21.843 3.42 1 82.85 ? O8 EPE 205 A 1 
HETATM 10 C C9 EPE . . . F 4 -38.127 -16.891 3.166 1 86.72 ? C9 EPE 205 A 1 
HETATM 11 C C10 EPE . . . F 4 -38.375 -15.525 2.528 1 86.87 ? C10 EPE 205 A 1 
HETATM 12 S S EPE . . . F 4 -39.73 -15.592 1.563 1 86.85 ? S EPE 205 A 1 
HETATM 13 O O1S EPE . . . F 4 -39.414 -16.399 0.365 1 86.93 ? O1S EPE 205 A 1 
HETATM 14 O O2S EPE . . . F 4 -40.137 -14.223 1.173 1 84.28 ? O2S EPE 205 A 1 
HETATM 15 O O3S EPE . . . F 4 -40.837 -16.255 2.281 1 87.8 ? O3S EPE 205 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#