data_6GD9 # _model_server_result.job_id 52rysAsPnkv4jsEABUULIA _model_server_result.datetime_utc '2024-11-13 08:05:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gd9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":207}' # _entry.id 6GD9 # _exptl.entry_id 6GD9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GD9 _cell.length_a 101.59 _cell.length_b 101.59 _cell.length_c 86.52 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GD9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 19 A CYS 14 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.627 ? covale ? covale2 A SG CYS 19 A CYS 14 1_555 B CBB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? covale ? covale3 A SG CYS 22 A CYS 17 1_555 B CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.655 ? metalc ? metalc1 A NE2 HIS 23 A HIS 18 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc2 A SD MET 85 A MET 80 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 6GD9 _atom_sites.fract_transf_matrix[1][1] 0.009843 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009843 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011558 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 201 118 HEC HEM . C 3 EVB A 1 202 1 EVB SC8 . D 3 EVB A 1 203 2 EVB SC8 . E 3 EVB A 1 204 3 EVB SC8 . F 4 EPE A 1 205 1 EPE EPE . G 4 EPE A 1 206 2 EPE EPE . H 4 EPE A 1 207 3 EPE EPE . I 4 EPE A 1 208 4 EPE EPE . J 5 SO4 A 1 209 1 SO4 SO4 . K 5 SO4 A 1 210 3 SO4 SO4 . L 5 SO4 A 1 211 4 SO4 SO4 . M 6 HOH A 1 301 37 HOH HOH . M 6 HOH A 2 302 16 HOH HOH . M 6 HOH A 3 303 7 HOH HOH . M 6 HOH A 4 304 21 HOH HOH . M 6 HOH A 5 305 12 HOH HOH . M 6 HOH A 6 306 30 HOH HOH . M 6 HOH A 7 307 17 HOH HOH . M 6 HOH A 8 308 2 HOH HOH . M 6 HOH A 9 309 27 HOH HOH . M 6 HOH A 10 310 18 HOH HOH . M 6 HOH A 11 311 34 HOH HOH . M 6 HOH A 12 312 14 HOH HOH . M 6 HOH A 13 313 29 HOH HOH . M 6 HOH A 14 314 9 HOH HOH . M 6 HOH A 15 315 11 HOH HOH . M 6 HOH A 16 316 3 HOH HOH . M 6 HOH A 17 317 15 HOH HOH . M 6 HOH A 18 318 36 HOH HOH . M 6 HOH A 19 319 28 HOH HOH . M 6 HOH A 20 320 6 HOH HOH . M 6 HOH A 21 321 1 HOH HOH . M 6 HOH A 22 322 8 HOH HOH . M 6 HOH A 23 323 10 HOH HOH . M 6 HOH A 24 324 13 HOH HOH . M 6 HOH A 25 325 5 HOH HOH . M 6 HOH A 26 326 4 HOH HOH . M 6 HOH A 27 327 35 HOH HOH . M 6 HOH A 28 328 25 HOH HOH . M 6 HOH A 29 329 33 HOH HOH . M 6 HOH A 30 330 19 HOH HOH . M 6 HOH A 31 331 22 HOH HOH . M 6 HOH A 32 332 20 HOH HOH . M 6 HOH A 33 333 23 HOH HOH . M 6 HOH A 34 334 24 HOH HOH . M 6 HOH A 35 335 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . A . H 4 -22.527 -21.527 -11.815 0.5 76.67 ? N1 EPE 207 A 1 HETATM 2 N N1 EPE . B . H 4 -21.553 -22.84 -11.18 0.5 81.42 ? N1 EPE 207 A 1 HETATM 3 C C2 EPE . A . H 4 -23.873 -21.881 -12.269 0.5 76.74 ? C2 EPE 207 A 1 HETATM 4 C C2 EPE . B . H 4 -22.814 -22.361 -10.608 0.5 80.01 ? C2 EPE 207 A 1 HETATM 5 C C3 EPE . A . H 4 -23.817 -23.23 -12.974 0.5 76.3 ? C3 EPE 207 A 1 HETATM 6 C C3 EPE . B . H 4 -23.593 -21.666 -11.716 0.5 80.28 ? C3 EPE 207 A 1 HETATM 7 N N4 EPE . A . H 4 -23.048 -24.175 -12.154 0.5 74.95 ? N4 EPE 207 A 1 HETATM 8 N N4 EPE . B . H 4 -23.322 -22.343 -12.994 0.5 80.04 ? N4 EPE 207 A 1 HETATM 9 C C5 EPE . A . H 4 -23.015 -23.69 -10.767 0.5 74.47 ? C5 EPE 207 A 1 HETATM 10 C C5 EPE . B . H 4 -23.16 -23.782 -12.743 0.5 80.72 ? C5 EPE 207 A 1 HETATM 11 C C6 EPE . A . H 4 -22.171 -22.422 -10.705 0.5 75.25 ? C6 EPE 207 A 1 HETATM 12 C C6 EPE . B . H 4 -21.841 -24.01 -12.02 0.5 80.8 ? C6 EPE 207 A 1 HETATM 13 C C7 EPE . A . H 4 -23.675 -25.501 -12.23 0.5 74.1 ? C7 EPE 207 A 1 HETATM 14 C C7 EPE . B . H 4 -24.417 -22.135 -13.955 0.5 78.62 ? C7 EPE 207 A 1 HETATM 15 C C8 EPE . A . H 4 -24.45 -25.618 -13.539 0.5 72.94 ? C8 EPE 207 A 1 HETATM 16 C C8 EPE . B . H 4 -24.272 -20.781 -14.642 0.5 77.12 ? C8 EPE 207 A 1 HETATM 17 O O8 EPE . A . H 4 -24.578 -26.994 -13.911 0.5 71.44 ? O8 EPE 207 A 1 HETATM 18 O O8 EPE . B . H 4 -24.205 -20.973 -16.06 0.5 75.76 ? O8 EPE 207 A 1 HETATM 19 C C9 EPE . A . H 4 -21.584 -21.698 -12.932 0.5 78.48 ? C9 EPE 207 A 1 HETATM 20 C C9 EPE . B . H 4 -20.972 -21.755 -11.99 0.5 83.3 ? C9 EPE 207 A 1 HETATM 21 C C10 EPE . A . H 4 -21.103 -20.339 -13.437 0.5 79.06 ? C10 EPE 207 A 1 HETATM 22 C C10 EPE . B . H 4 -20.694 -22.219 -13.418 0.5 84 ? C10 EPE 207 A 1 HETATM 23 S S EPE . A . H 4 -21.152 -20.262 -15.101 0.5 79.84 ? S EPE 207 A 1 HETATM 24 S S EPE . B . H 4 -19.418 -21.367 -14.071 0.5 84.34 ? S EPE 207 A 1 HETATM 25 O O1S EPE . A . H 4 -20.02 -19.441 -15.585 0.5 79.14 ? O1S EPE 207 A 1 HETATM 26 O O1S EPE . B . H 4 -18.142 -22.008 -13.683 0.5 82.84 ? O1S EPE 207 A 1 HETATM 27 O O2S EPE . A . H 4 -21.054 -21.624 -15.674 0.5 79.1 ? O2S EPE 207 A 1 HETATM 28 O O2S EPE . B . H 4 -19.538 -21.371 -15.546 0.5 83.79 ? O2S EPE 207 A 1 HETATM 29 O O3S EPE . A . H 4 -22.428 -19.641 -15.524 0.5 79.5 ? O3S EPE 207 A 1 HETATM 30 O O3S EPE . B . H 4 -19.442 -19.969 -13.578 0.5 83.39 ? O3S EPE 207 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #