data_6GD9 # _model_server_result.job_id kcqrXAbfoxhjG1MGTKRjhA _model_server_result.datetime_utc '2024-11-27 01:05:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gd9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":209}' # _entry.id 6GD9 # _exptl.entry_id 6GD9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GD9 _cell.length_a 101.59 _cell.length_b 101.59 _cell.length_c 86.52 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GD9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 19 A CYS 14 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.627 ? covale ? covale2 A SG CYS 19 A CYS 14 1_555 B CBB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? covale ? covale3 A SG CYS 22 A CYS 17 1_555 B CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.655 ? metalc ? metalc1 A NE2 HIS 23 A HIS 18 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc2 A SD MET 85 A MET 80 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 559 n n S O2 SO4 doub 560 n n S O3 SO4 sing 561 n n S O4 SO4 sing 562 n n # _atom_sites.entry_id 6GD9 _atom_sites.fract_transf_matrix[1][1] 0.009843 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009843 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011558 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 201 118 HEC HEM . C 3 EVB A 1 202 1 EVB SC8 . D 3 EVB A 1 203 2 EVB SC8 . E 3 EVB A 1 204 3 EVB SC8 . F 4 EPE A 1 205 1 EPE EPE . G 4 EPE A 1 206 2 EPE EPE . H 4 EPE A 1 207 3 EPE EPE . I 4 EPE A 1 208 4 EPE EPE . J 5 SO4 A 1 209 1 SO4 SO4 . K 5 SO4 A 1 210 3 SO4 SO4 . L 5 SO4 A 1 211 4 SO4 SO4 . M 6 HOH A 1 301 37 HOH HOH . M 6 HOH A 2 302 16 HOH HOH . M 6 HOH A 3 303 7 HOH HOH . M 6 HOH A 4 304 21 HOH HOH . M 6 HOH A 5 305 12 HOH HOH . M 6 HOH A 6 306 30 HOH HOH . M 6 HOH A 7 307 17 HOH HOH . M 6 HOH A 8 308 2 HOH HOH . M 6 HOH A 9 309 27 HOH HOH . M 6 HOH A 10 310 18 HOH HOH . M 6 HOH A 11 311 34 HOH HOH . M 6 HOH A 12 312 14 HOH HOH . M 6 HOH A 13 313 29 HOH HOH . M 6 HOH A 14 314 9 HOH HOH . M 6 HOH A 15 315 11 HOH HOH . M 6 HOH A 16 316 3 HOH HOH . M 6 HOH A 17 317 15 HOH HOH . M 6 HOH A 18 318 36 HOH HOH . M 6 HOH A 19 319 28 HOH HOH . M 6 HOH A 20 320 6 HOH HOH . M 6 HOH A 21 321 1 HOH HOH . M 6 HOH A 22 322 8 HOH HOH . M 6 HOH A 23 323 10 HOH HOH . M 6 HOH A 24 324 13 HOH HOH . M 6 HOH A 25 325 5 HOH HOH . M 6 HOH A 26 326 4 HOH HOH . M 6 HOH A 27 327 35 HOH HOH . M 6 HOH A 28 328 25 HOH HOH . M 6 HOH A 29 329 33 HOH HOH . M 6 HOH A 30 330 19 HOH HOH . M 6 HOH A 31 331 22 HOH HOH . M 6 HOH A 32 332 20 HOH HOH . M 6 HOH A 33 333 23 HOH HOH . M 6 HOH A 34 334 24 HOH HOH . M 6 HOH A 35 335 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . J 5 -41.229 11.312 0.597 1 99.23 ? S SO4 209 A 1 HETATM 2 O O1 SO4 . . . J 5 -40.161 11.279 -0.426 1 97.77 ? O1 SO4 209 A 1 HETATM 3 O O2 SO4 . . . J 5 -42.539 11.524 -0.063 1 98.38 ? O2 SO4 209 A 1 HETATM 4 O O3 SO4 . . . J 5 -40.955 12.421 1.539 1 99.53 ? O3 SO4 209 A 1 HETATM 5 O O4 SO4 . . . J 5 -41.255 10.031 1.34 1 99.17 ? O4 SO4 209 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #