data_6GDT # _model_server_result.job_id mXRG5f1-yUB41Q2ZAX8t5w _model_server_result.datetime_utc '2024-11-26 02:58:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gdt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 6GDT # _exptl.entry_id 6GDT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GDT _cell.length_a 234.899 _cell.length_b 234.899 _cell.length_c 129.421 _cell.Z_PDB 30 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G 1 1 D,J 1 2 C,F,I 2 1 B,H 2 3 E,K 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_544 -y,x-y-1,z-1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 117.4495 -203.428501 -43.140333 3 'crystal symmetry operation' 5_554 x-y,-y,-z-2/3 1 0 0 0 -1 0 0 0 -1 0 0 -86.280667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6GDT _atom_sites.fract_transf_matrix[1][1] 0.004257 _atom_sites.fract_transf_matrix[1][2] 0.002458 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004916 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007727 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 EDO C 1 601 1 EDO EDO . G 3 HOH A 1 601 41 HOH HOH . G 3 HOH A 2 602 22 HOH HOH . G 3 HOH A 3 603 28 HOH HOH . G 3 HOH A 4 604 30 HOH HOH . G 3 HOH A 5 605 115 HOH HOH . G 3 HOH A 6 606 131 HOH HOH . G 3 HOH A 7 607 36 HOH HOH . G 3 HOH A 8 608 35 HOH HOH . G 3 HOH A 9 609 117 HOH HOH . G 3 HOH A 10 610 31 HOH HOH . G 3 HOH A 11 611 52 HOH HOH . G 3 HOH A 12 612 96 HOH HOH . G 3 HOH A 13 613 37 HOH HOH . G 3 HOH A 14 614 106 HOH HOH . G 3 HOH A 15 615 116 HOH HOH . G 3 HOH A 16 616 40 HOH HOH . G 3 HOH A 17 617 24 HOH HOH . G 3 HOH A 18 618 32 HOH HOH . G 3 HOH A 19 619 33 HOH HOH . H 3 HOH B 1 601 3 HOH HOH . H 3 HOH B 2 602 71 HOH HOH . H 3 HOH B 3 603 62 HOH HOH . H 3 HOH B 4 604 57 HOH HOH . H 3 HOH B 5 605 59 HOH HOH . H 3 HOH B 6 606 10 HOH HOH . H 3 HOH B 7 607 55 HOH HOH . H 3 HOH B 8 608 50 HOH HOH . H 3 HOH B 9 609 51 HOH HOH . H 3 HOH B 10 610 42 HOH HOH . H 3 HOH B 11 611 2 HOH HOH . H 3 HOH B 12 612 48 HOH HOH . H 3 HOH B 13 613 64 HOH HOH . H 3 HOH B 14 614 58 HOH HOH . H 3 HOH B 15 615 1 HOH HOH . H 3 HOH B 16 616 61 HOH HOH . H 3 HOH B 17 617 5 HOH HOH . H 3 HOH B 18 618 68 HOH HOH . I 3 HOH C 1 701 81 HOH HOH . I 3 HOH C 2 702 84 HOH HOH . I 3 HOH C 3 703 27 HOH HOH . I 3 HOH C 4 704 90 HOH HOH . I 3 HOH C 5 705 87 HOH HOH . I 3 HOH C 6 706 80 HOH HOH . I 3 HOH C 7 707 82 HOH HOH . I 3 HOH C 8 708 85 HOH HOH . I 3 HOH C 9 709 86 HOH HOH . I 3 HOH C 10 710 23 HOH HOH . I 3 HOH C 11 711 26 HOH HOH . J 3 HOH D 1 601 94 HOH HOH . J 3 HOH D 2 602 103 HOH HOH . J 3 HOH D 3 603 101 HOH HOH . J 3 HOH D 4 604 98 HOH HOH . J 3 HOH D 5 605 104 HOH HOH . J 3 HOH D 6 606 19 HOH HOH . J 3 HOH D 7 607 14 HOH HOH . J 3 HOH D 8 608 18 HOH HOH . J 3 HOH D 9 609 95 HOH HOH . J 3 HOH D 10 610 66 HOH HOH . J 3 HOH D 11 611 100 HOH HOH . J 3 HOH D 12 612 97 HOH HOH . J 3 HOH D 13 613 20 HOH HOH . J 3 HOH D 14 614 12 HOH HOH . J 3 HOH D 15 615 126 HOH HOH . J 3 HOH D 16 616 65 HOH HOH . J 3 HOH D 17 617 125 HOH HOH . K 3 HOH E 1 601 110 HOH HOH . K 3 HOH E 2 602 21 HOH HOH . K 3 HOH E 3 603 25 HOH HOH . K 3 HOH E 4 604 44 HOH HOH . K 3 HOH E 5 605 69 HOH HOH . K 3 HOH E 6 606 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 2 118.015 -16.536 -21.365 1 81.36 ? C1 EDO 601 C 1 HETATM 2 O O1 EDO . . . F 2 117.337 -15.737 -20.381 1 76.93 ? O1 EDO 601 C 1 HETATM 3 C C2 EDO . . . F 2 119.498 -16.134 -21.495 1 80.02 ? C2 EDO 601 C 1 HETATM 4 O O2 EDO . . . F 2 119.667 -14.745 -21.83 1 68.6 ? O2 EDO 601 C 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #