data_6GE9 # _model_server_result.job_id rpwPJTCrpRGr3CdoPjXTXQ _model_server_result.datetime_utc '2024-11-17 18:26:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ge9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6GE9 # _exptl.entry_id 6GE9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GE9 _cell.length_a 109.753 _cell.length_b 109.753 _cell.length_c 364.894 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GE9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 54.8765 -95.048886 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 109.753 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 392 A SER 392 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc2 A OG SER 392 A SER 392 1_555 B MG MG . A MG 501 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc3 A OD1 ASP 417 A ASP 417 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc4 A OD1 ASP 417 A ASP 417 1_555 B MG MG . A MG 501 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 6GE9 _atom_sites.fract_transf_matrix[1][1] 0.009111 _atom_sites.fract_transf_matrix[1][2] 0.00526 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 501 1 MG MG . C 3 G1P A 1 502 1 G1P G1P . D 4 ACO A 1 503 1 ACO ACO . E 5 PEG A 1 504 1 PEG PEG . F 5 PEG A 1 505 2 PEG PEG . G 6 EDO A 1 506 1 EDO EDO . H 6 EDO A 1 507 2 EDO EDO . I 6 EDO A 1 508 3 EDO EDO . J 7 HOH A 1 601 76 HOH HOH . J 7 HOH A 2 602 1 HOH HOH . J 7 HOH A 3 603 66 HOH HOH . J 7 HOH A 4 604 12 HOH HOH . J 7 HOH A 5 605 21 HOH HOH . J 7 HOH A 6 606 49 HOH HOH . J 7 HOH A 7 607 14 HOH HOH . J 7 HOH A 8 608 30 HOH HOH . J 7 HOH A 9 609 31 HOH HOH . J 7 HOH A 10 610 61 HOH HOH . J 7 HOH A 11 611 2 HOH HOH . J 7 HOH A 12 612 36 HOH HOH . J 7 HOH A 13 613 16 HOH HOH . J 7 HOH A 14 614 80 HOH HOH . J 7 HOH A 15 615 29 HOH HOH . J 7 HOH A 16 616 75 HOH HOH . J 7 HOH A 17 617 19 HOH HOH . J 7 HOH A 18 618 18 HOH HOH . J 7 HOH A 19 619 32 HOH HOH . J 7 HOH A 20 620 39 HOH HOH . J 7 HOH A 21 621 27 HOH HOH . J 7 HOH A 22 622 41 HOH HOH . J 7 HOH A 23 623 24 HOH HOH . J 7 HOH A 24 624 13 HOH HOH . J 7 HOH A 25 625 57 HOH HOH . J 7 HOH A 26 626 25 HOH HOH . J 7 HOH A 27 627 62 HOH HOH . J 7 HOH A 28 628 15 HOH HOH . J 7 HOH A 29 629 70 HOH HOH . J 7 HOH A 30 630 52 HOH HOH . J 7 HOH A 31 631 10 HOH HOH . J 7 HOH A 32 632 28 HOH HOH . J 7 HOH A 33 633 93 HOH HOH . J 7 HOH A 34 634 87 HOH HOH . J 7 HOH A 35 635 46 HOH HOH . J 7 HOH A 36 636 20 HOH HOH . J 7 HOH A 37 637 55 HOH HOH . J 7 HOH A 38 638 4 HOH HOH . J 7 HOH A 39 639 26 HOH HOH . J 7 HOH A 40 640 42 HOH HOH . J 7 HOH A 41 641 22 HOH HOH . J 7 HOH A 42 642 37 HOH HOH . J 7 HOH A 43 643 7 HOH HOH . J 7 HOH A 44 644 65 HOH HOH . J 7 HOH A 45 645 5 HOH HOH . J 7 HOH A 46 646 48 HOH HOH . J 7 HOH A 47 647 40 HOH HOH . J 7 HOH A 48 648 82 HOH HOH . J 7 HOH A 49 649 51 HOH HOH . J 7 HOH A 50 650 91 HOH HOH . J 7 HOH A 51 651 83 HOH HOH . J 7 HOH A 52 652 69 HOH HOH . J 7 HOH A 53 653 9 HOH HOH . J 7 HOH A 54 654 34 HOH HOH . J 7 HOH A 55 655 68 HOH HOH . J 7 HOH A 56 656 63 HOH HOH . J 7 HOH A 57 657 81 HOH HOH . J 7 HOH A 58 658 59 HOH HOH . J 7 HOH A 59 659 67 HOH HOH . J 7 HOH A 60 660 58 HOH HOH . J 7 HOH A 61 661 38 HOH HOH . J 7 HOH A 62 662 89 HOH HOH . J 7 HOH A 63 663 64 HOH HOH . J 7 HOH A 64 664 71 HOH HOH . J 7 HOH A 65 665 23 HOH HOH . J 7 HOH A 66 666 92 HOH HOH . J 7 HOH A 67 667 77 HOH HOH . J 7 HOH A 68 668 47 HOH HOH . J 7 HOH A 69 669 35 HOH HOH . J 7 HOH A 70 670 45 HOH HOH . J 7 HOH A 71 671 8 HOH HOH . J 7 HOH A 72 672 90 HOH HOH . J 7 HOH A 73 673 74 HOH HOH . J 7 HOH A 74 674 6 HOH HOH . J 7 HOH A 75 675 73 HOH HOH . J 7 HOH A 76 676 53 HOH HOH . J 7 HOH A 77 677 33 HOH HOH . J 7 HOH A 78 678 85 HOH HOH . J 7 HOH A 79 679 72 HOH HOH . J 7 HOH A 80 680 86 HOH HOH . J 7 HOH A 81 681 17 HOH HOH . J 7 HOH A 82 682 50 HOH HOH . J 7 HOH A 83 683 79 HOH HOH . J 7 HOH A 84 684 44 HOH HOH . J 7 HOH A 85 685 78 HOH HOH . J 7 HOH A 86 686 11 HOH HOH . J 7 HOH A 87 687 84 HOH HOH . J 7 HOH A 88 688 54 HOH HOH . J 7 HOH A 89 689 88 HOH HOH . J 7 HOH A 90 690 3 HOH HOH . J 7 HOH A 91 691 43 HOH HOH . J 7 HOH A 92 692 56 HOH HOH . J 7 HOH A 93 693 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . D 4 59.006 -38.493 -26.351 1 73.9 ? N1A ACO 503 A 1 HETATM 2 C C2A ACO . . . D 4 58.581 -38.511 -27.628 1 69.98 ? C2A ACO 503 A 1 HETATM 3 N N3A ACO . . . D 4 58.948 -39.444 -28.524 1 68.44 ? N3A ACO 503 A 1 HETATM 4 C C4A ACO . . . D 4 59.792 -40.444 -28.177 1 71.08 ? C4A ACO 503 A 1 HETATM 5 C C5A ACO . . . D 4 60.301 -40.494 -26.798 1 68.43 ? C5A ACO 503 A 1 HETATM 6 C C6A ACO . . . D 4 59.851 -39.431 -25.869 1 67.12 ? C6A ACO 503 A 1 HETATM 7 N N6A ACO . . . D 4 60.272 -39.402 -24.582 1 61.74 ? N6A ACO 503 A 1 HETATM 8 N N7A ACO . . . D 4 61.106 -41.57 -26.724 1 60.47 ? N7A ACO 503 A 1 HETATM 9 C C8A ACO . . . D 4 61.11 -42.16 -27.946 1 66.86 ? C8A ACO 503 A 1 HETATM 10 N N9A ACO . . . D 4 60.335 -41.484 -28.814 1 72.92 ? N9A ACO 503 A 1 HETATM 11 C C1B ACO . . . D 4 60.099 -41.853 -30.23 1 78.87 ? C1B ACO 503 A 1 HETATM 12 C C2B ACO . . . D 4 61.393 -41.834 -31.029 1 74.84 ? C2B ACO 503 A 1 HETATM 13 O O2B ACO . . . D 4 61.47 -40.673 -31.859 1 80.31 ? O2B ACO 503 A 1 HETATM 14 C C3B ACO . . . D 4 61.334 -43.088 -31.873 1 84.16 ? C3B ACO 503 A 1 HETATM 15 O O3B ACO . . . D 4 60.674 -42.807 -33.103 1 98.29 ? O3B ACO 503 A 1 HETATM 16 P P3B ACO . . . D 4 61.418 -42.9 -34.527 1 98.68 ? P3B ACO 503 A 1 HETATM 17 O O7A ACO . . . D 4 62.777 -43.471 -34.201 1 102.47 ? O7A ACO 503 A 1 HETATM 18 O O8A ACO . . . D 4 61.425 -41.478 -35.034 1 95.41 ? O8A ACO 503 A 1 HETATM 19 O O9A ACO . . . D 4 60.534 -43.836 -35.317 1 92.8 ? O9A ACO 503 A 1 HETATM 20 C C4B ACO . . . D 4 60.431 -44.02 -31.09 1 80.83 ? C4B ACO 503 A 1 HETATM 21 O O4B ACO . . . D 4 59.619 -43.199 -30.251 1 85.76 ? O4B ACO 503 A 1 HETATM 22 C C5B ACO . . . D 4 61.201 -44.985 -30.2 1 80.74 ? C5B ACO 503 A 1 HETATM 23 O O5B ACO . . . D 4 62.304 -45.549 -30.901 1 90.73 ? O5B ACO 503 A 1 HETATM 24 P P1A ACO . . . D 4 63.645 -45.894 -30.083 1 95.5 ? P1A ACO 503 A 1 HETATM 25 O O1A ACO . . . D 4 64.612 -44.75 -30.271 1 96.19 ? O1A ACO 503 A 1 HETATM 26 O O2A ACO . . . D 4 64.061 -47.306 -30.423 1 112.55 ? O2A ACO 503 A 1 HETATM 27 O O3A ACO . . . D 4 63.118 -45.875 -28.562 1 88.13 ? O3A ACO 503 A 1 HETATM 28 P P2A ACO . . . D 4 64.143 -45.903 -27.32 1 88.72 ? P2A ACO 503 A 1 HETATM 29 O O4A ACO . . . D 4 64.61 -47.325 -27.122 1 77.56 ? O4A ACO 503 A 1 HETATM 30 O O5A ACO . . . D 4 65.152 -44.792 -27.493 1 79.31 ? O5A ACO 503 A 1 HETATM 31 O O6A ACO . . . D 4 63.18 -45.512 -26.092 1 90.09 ? O6A ACO 503 A 1 HETATM 32 C CBP ACO . . . D 4 62.526 -44.32 -24.101 1 63.73 ? CBP ACO 503 A 1 HETATM 33 C CCP ACO . . . D 4 63.647 -44.622 -25.083 1 80.22 ? CCP ACO 503 A 1 HETATM 34 C CDP ACO . . . D 4 62.511 -45.397 -23.027 1 52.58 ? CDP ACO 503 A 1 HETATM 35 C CEP ACO . . . D 4 61.192 -44.302 -24.833 1 59.42 ? CEP ACO 503 A 1 HETATM 36 C CAP ACO . . . D 4 62.811 -42.944 -23.494 1 68.8 ? CAP ACO 503 A 1 HETATM 37 O OAP ACO . . . D 4 62.871 -41.975 -24.548 1 69.99 ? OAP ACO 503 A 1 HETATM 38 C C9P ACO . . . D 4 61.767 -42.516 -22.499 1 69.6 ? C9P ACO 503 A 1 HETATM 39 O O9P ACO . . . D 4 60.797 -41.862 -22.851 1 70.28 ? O9P ACO 503 A 1 HETATM 40 N N8P ACO . . . D 4 61.973 -42.875 -21.236 1 64.54 ? N8P ACO 503 A 1 HETATM 41 C C7P ACO . . . D 4 61.129 -42.426 -20.148 1 60.57 ? C7P ACO 503 A 1 HETATM 42 C C6P ACO . . . D 4 61.224 -43.386 -18.97 1 56.45 ? C6P ACO 503 A 1 HETATM 43 C C5P ACO . . . D 4 60.621 -42.753 -17.742 1 57.38 ? C5P ACO 503 A 1 HETATM 44 O O5P ACO . . . D 4 60.248 -41.591 -17.763 1 61.01 ? O5P ACO 503 A 1 HETATM 45 N N4P ACO . . . D 4 60.542 -43.526 -16.664 1 53.99 ? N4P ACO 503 A 1 HETATM 46 C C3P ACO . . . D 4 59.515 -43.326 -15.663 1 57.19 ? C3P ACO 503 A 1 HETATM 47 C C2P ACO . . . D 4 60.088 -43.354 -14.252 1 70.64 ? C2P ACO 503 A 1 HETATM 48 S S1P ACO . . . D 4 61.611 -42.469 -14.241 1 74.81 ? S1P ACO 503 A 1 HETATM 49 C C ACO . . . D 4 61.379 -41.51 -12.9 1 69.97 ? C ACO 503 A 1 HETATM 50 O O ACO . . . D 4 60.413 -41.717 -12.184 1 75.35 ? O ACO 503 A 1 HETATM 51 C CH3 ACO . . . D 4 62.36 -40.411 -12.619 1 62.39 ? CH3 ACO 503 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 51 #