data_6GE9 # _model_server_result.job_id X_jO_UtkjQSoZxzZ2oCNmQ _model_server_result.datetime_utc '2024-11-17 18:47:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ge9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":508}' # _entry.id 6GE9 # _exptl.entry_id 6GE9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GE9 _cell.length_a 109.753 _cell.length_b 109.753 _cell.length_c 364.894 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GE9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 54.8765 -95.048886 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 109.753 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 392 A SER 392 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc2 A OG SER 392 A SER 392 1_555 B MG MG . A MG 501 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc3 A OD1 ASP 417 A ASP 417 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc4 A OD1 ASP 417 A ASP 417 1_555 B MG MG . A MG 501 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 174 n n C1 C2 EDO sing 175 n n C1 H11 EDO sing 176 n n C1 H12 EDO sing 177 n n O1 HO1 EDO sing 178 n n C2 O2 EDO sing 179 n n C2 H21 EDO sing 180 n n C2 H22 EDO sing 181 n n O2 HO2 EDO sing 182 n n # _atom_sites.entry_id 6GE9 _atom_sites.fract_transf_matrix[1][1] 0.009111 _atom_sites.fract_transf_matrix[1][2] 0.00526 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 501 1 MG MG . C 3 G1P A 1 502 1 G1P G1P . D 4 ACO A 1 503 1 ACO ACO . E 5 PEG A 1 504 1 PEG PEG . F 5 PEG A 1 505 2 PEG PEG . G 6 EDO A 1 506 1 EDO EDO . H 6 EDO A 1 507 2 EDO EDO . I 6 EDO A 1 508 3 EDO EDO . J 7 HOH A 1 601 76 HOH HOH . J 7 HOH A 2 602 1 HOH HOH . J 7 HOH A 3 603 66 HOH HOH . J 7 HOH A 4 604 12 HOH HOH . J 7 HOH A 5 605 21 HOH HOH . J 7 HOH A 6 606 49 HOH HOH . J 7 HOH A 7 607 14 HOH HOH . J 7 HOH A 8 608 30 HOH HOH . J 7 HOH A 9 609 31 HOH HOH . J 7 HOH A 10 610 61 HOH HOH . J 7 HOH A 11 611 2 HOH HOH . J 7 HOH A 12 612 36 HOH HOH . J 7 HOH A 13 613 16 HOH HOH . J 7 HOH A 14 614 80 HOH HOH . J 7 HOH A 15 615 29 HOH HOH . J 7 HOH A 16 616 75 HOH HOH . J 7 HOH A 17 617 19 HOH HOH . J 7 HOH A 18 618 18 HOH HOH . J 7 HOH A 19 619 32 HOH HOH . J 7 HOH A 20 620 39 HOH HOH . J 7 HOH A 21 621 27 HOH HOH . J 7 HOH A 22 622 41 HOH HOH . J 7 HOH A 23 623 24 HOH HOH . J 7 HOH A 24 624 13 HOH HOH . J 7 HOH A 25 625 57 HOH HOH . J 7 HOH A 26 626 25 HOH HOH . J 7 HOH A 27 627 62 HOH HOH . J 7 HOH A 28 628 15 HOH HOH . J 7 HOH A 29 629 70 HOH HOH . J 7 HOH A 30 630 52 HOH HOH . J 7 HOH A 31 631 10 HOH HOH . J 7 HOH A 32 632 28 HOH HOH . J 7 HOH A 33 633 93 HOH HOH . J 7 HOH A 34 634 87 HOH HOH . J 7 HOH A 35 635 46 HOH HOH . J 7 HOH A 36 636 20 HOH HOH . J 7 HOH A 37 637 55 HOH HOH . J 7 HOH A 38 638 4 HOH HOH . J 7 HOH A 39 639 26 HOH HOH . J 7 HOH A 40 640 42 HOH HOH . J 7 HOH A 41 641 22 HOH HOH . J 7 HOH A 42 642 37 HOH HOH . J 7 HOH A 43 643 7 HOH HOH . J 7 HOH A 44 644 65 HOH HOH . J 7 HOH A 45 645 5 HOH HOH . J 7 HOH A 46 646 48 HOH HOH . J 7 HOH A 47 647 40 HOH HOH . J 7 HOH A 48 648 82 HOH HOH . J 7 HOH A 49 649 51 HOH HOH . J 7 HOH A 50 650 91 HOH HOH . J 7 HOH A 51 651 83 HOH HOH . J 7 HOH A 52 652 69 HOH HOH . J 7 HOH A 53 653 9 HOH HOH . J 7 HOH A 54 654 34 HOH HOH . J 7 HOH A 55 655 68 HOH HOH . J 7 HOH A 56 656 63 HOH HOH . J 7 HOH A 57 657 81 HOH HOH . J 7 HOH A 58 658 59 HOH HOH . J 7 HOH A 59 659 67 HOH HOH . J 7 HOH A 60 660 58 HOH HOH . J 7 HOH A 61 661 38 HOH HOH . J 7 HOH A 62 662 89 HOH HOH . J 7 HOH A 63 663 64 HOH HOH . J 7 HOH A 64 664 71 HOH HOH . J 7 HOH A 65 665 23 HOH HOH . J 7 HOH A 66 666 92 HOH HOH . J 7 HOH A 67 667 77 HOH HOH . J 7 HOH A 68 668 47 HOH HOH . J 7 HOH A 69 669 35 HOH HOH . J 7 HOH A 70 670 45 HOH HOH . J 7 HOH A 71 671 8 HOH HOH . J 7 HOH A 72 672 90 HOH HOH . J 7 HOH A 73 673 74 HOH HOH . J 7 HOH A 74 674 6 HOH HOH . J 7 HOH A 75 675 73 HOH HOH . J 7 HOH A 76 676 53 HOH HOH . J 7 HOH A 77 677 33 HOH HOH . J 7 HOH A 78 678 85 HOH HOH . J 7 HOH A 79 679 72 HOH HOH . J 7 HOH A 80 680 86 HOH HOH . J 7 HOH A 81 681 17 HOH HOH . J 7 HOH A 82 682 50 HOH HOH . J 7 HOH A 83 683 79 HOH HOH . J 7 HOH A 84 684 44 HOH HOH . J 7 HOH A 85 685 78 HOH HOH . J 7 HOH A 86 686 11 HOH HOH . J 7 HOH A 87 687 84 HOH HOH . J 7 HOH A 88 688 54 HOH HOH . J 7 HOH A 89 689 88 HOH HOH . J 7 HOH A 90 690 3 HOH HOH . J 7 HOH A 91 691 43 HOH HOH . J 7 HOH A 92 692 56 HOH HOH . J 7 HOH A 93 693 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 6 44.826 -54.307 4.643 1 85.21 ? C1 EDO 508 A 1 HETATM 2 O O1 EDO . . . I 6 44.681 -53.268 5.617 1 79.78 ? O1 EDO 508 A 1 HETATM 3 C C2 EDO . . . I 6 44.512 -53.753 3.258 1 86.58 ? C2 EDO 508 A 1 HETATM 4 O O2 EDO . . . I 6 44.711 -54.777 2.277 1 85.63 ? O2 EDO 508 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #