data_6GEC # _model_server_result.job_id AsvLWqBfDIDJ2NNMolXrXg _model_server_result.datetime_utc '2024-11-07 13:01:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6GEC # _exptl.entry_id 6GEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GEC _cell.length_a 58.882 _cell.length_b 58.882 _cell.length_c 158.508 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 152 A CYS 367 1_555 C C1 MYR . A MYR 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.774 ? covale ? covale2 B C ACE 1 L ACE 59 1_555 B N ASP 2 L ASP 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 243 n n C1 O2 MYR sing 244 n n C1 C2 MYR sing 245 n n O2 HO2 MYR sing 246 n n C2 C3 MYR sing 247 n n C2 H21 MYR sing 248 n n C2 H22 MYR sing 249 n n C3 C4 MYR sing 250 n n C3 H31 MYR sing 251 n n C3 H32 MYR sing 252 n n C4 C5 MYR sing 253 n n C4 H41 MYR sing 254 n n C4 H42 MYR sing 255 n n C5 C6 MYR sing 256 n n C5 H51 MYR sing 257 n n C5 H52 MYR sing 258 n n C6 C7 MYR sing 259 n n C6 H61 MYR sing 260 n n C6 H62 MYR sing 261 n n C7 C8 MYR sing 262 n n C7 H71 MYR sing 263 n n C7 H72 MYR sing 264 n n C8 C9 MYR sing 265 n n C8 H81 MYR sing 266 n n C8 H82 MYR sing 267 n n C9 C10 MYR sing 268 n n C9 H91 MYR sing 269 n n C9 H92 MYR sing 270 n n C10 C11 MYR sing 271 n n C10 H101 MYR sing 272 n n C10 H102 MYR sing 273 n n C11 C12 MYR sing 274 n n C11 H111 MYR sing 275 n n C11 H112 MYR sing 276 n n C12 C13 MYR sing 277 n n C12 H121 MYR sing 278 n n C12 H122 MYR sing 279 n n C13 C14 MYR sing 280 n n C13 H131 MYR sing 281 n n C13 H132 MYR sing 282 n n C14 H141 MYR sing 283 n n C14 H142 MYR sing 284 n n C14 H143 MYR sing 285 n n # _atom_sites.entry_id 6GEC _atom_sites.fract_transf_matrix[1][1] 0.016983 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016983 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MYR A 1 501 1 MYR MYR . D 4 HOH A 1 601 137 HOH HOH . D 4 HOH A 2 602 109 HOH HOH . D 4 HOH A 3 603 51 HOH HOH . D 4 HOH A 4 604 5 HOH HOH . D 4 HOH A 5 605 7 HOH HOH . D 4 HOH A 6 606 172 HOH HOH . D 4 HOH A 7 607 40 HOH HOH . D 4 HOH A 8 608 134 HOH HOH . D 4 HOH A 9 609 93 HOH HOH . D 4 HOH A 10 610 3 HOH HOH . D 4 HOH A 11 611 26 HOH HOH . D 4 HOH A 12 612 11 HOH HOH . D 4 HOH A 13 613 166 HOH HOH . D 4 HOH A 14 614 111 HOH HOH . D 4 HOH A 15 615 66 HOH HOH . D 4 HOH A 16 616 12 HOH HOH . D 4 HOH A 17 617 57 HOH HOH . D 4 HOH A 18 618 47 HOH HOH . D 4 HOH A 19 619 76 HOH HOH . D 4 HOH A 20 620 167 HOH HOH . D 4 HOH A 21 621 88 HOH HOH . D 4 HOH A 22 622 83 HOH HOH . D 4 HOH A 23 623 9 HOH HOH . D 4 HOH A 24 624 173 HOH HOH . D 4 HOH A 25 625 86 HOH HOH . D 4 HOH A 26 626 155 HOH HOH . D 4 HOH A 27 627 164 HOH HOH . D 4 HOH A 28 628 17 HOH HOH . D 4 HOH A 29 629 110 HOH HOH . D 4 HOH A 30 630 194 HOH HOH . D 4 HOH A 31 631 81 HOH HOH . D 4 HOH A 32 632 177 HOH HOH . D 4 HOH A 33 633 43 HOH HOH . D 4 HOH A 34 634 117 HOH HOH . D 4 HOH A 35 635 79 HOH HOH . D 4 HOH A 36 636 178 HOH HOH . D 4 HOH A 37 637 67 HOH HOH . D 4 HOH A 38 638 31 HOH HOH . D 4 HOH A 39 639 142 HOH HOH . D 4 HOH A 40 640 188 HOH HOH . D 4 HOH A 41 641 90 HOH HOH . D 4 HOH A 42 642 85 HOH HOH . D 4 HOH A 43 643 69 HOH HOH . D 4 HOH A 44 644 193 HOH HOH . D 4 HOH A 45 645 106 HOH HOH . D 4 HOH A 46 646 170 HOH HOH . D 4 HOH A 47 647 41 HOH HOH . D 4 HOH A 48 648 153 HOH HOH . D 4 HOH A 49 649 80 HOH HOH . D 4 HOH A 50 650 124 HOH HOH . D 4 HOH A 51 651 97 HOH HOH . D 4 HOH A 52 652 182 HOH HOH . D 4 HOH A 53 653 32 HOH HOH . D 4 HOH A 54 654 161 HOH HOH . D 4 HOH A 55 655 33 HOH HOH . D 4 HOH A 56 656 100 HOH HOH . D 4 HOH A 57 657 59 HOH HOH . D 4 HOH A 58 658 148 HOH HOH . D 4 HOH A 59 659 22 HOH HOH . D 4 HOH A 60 660 186 HOH HOH . D 4 HOH A 61 661 15 HOH HOH . D 4 HOH A 62 662 24 HOH HOH . D 4 HOH A 63 663 84 HOH HOH . D 4 HOH A 64 664 123 HOH HOH . D 4 HOH A 65 665 4 HOH HOH . D 4 HOH A 66 666 8 HOH HOH . D 4 HOH A 67 667 187 HOH HOH . D 4 HOH A 68 668 175 HOH HOH . D 4 HOH A 69 669 128 HOH HOH . D 4 HOH A 70 670 135 HOH HOH . D 4 HOH A 71 671 114 HOH HOH . D 4 HOH A 72 672 58 HOH HOH . D 4 HOH A 73 673 96 HOH HOH . D 4 HOH A 74 674 23 HOH HOH . D 4 HOH A 75 675 19 HOH HOH . D 4 HOH A 76 676 139 HOH HOH . D 4 HOH A 77 677 2 HOH HOH . D 4 HOH A 78 678 49 HOH HOH . D 4 HOH A 79 679 63 HOH HOH . D 4 HOH A 80 680 82 HOH HOH . D 4 HOH A 81 681 46 HOH HOH . D 4 HOH A 82 682 183 HOH HOH . D 4 HOH A 83 683 18 HOH HOH . D 4 HOH A 84 684 184 HOH HOH . D 4 HOH A 85 685 180 HOH HOH . D 4 HOH A 86 686 16 HOH HOH . D 4 HOH A 87 687 156 HOH HOH . D 4 HOH A 88 688 68 HOH HOH . D 4 HOH A 89 689 60 HOH HOH . D 4 HOH A 90 690 138 HOH HOH . D 4 HOH A 91 691 28 HOH HOH . D 4 HOH A 92 692 30 HOH HOH . D 4 HOH A 93 693 118 HOH HOH . D 4 HOH A 94 694 162 HOH HOH . D 4 HOH A 95 695 119 HOH HOH . D 4 HOH A 96 696 91 HOH HOH . D 4 HOH A 97 697 64 HOH HOH . D 4 HOH A 98 698 1 HOH HOH . D 4 HOH A 99 699 140 HOH HOH . D 4 HOH A 100 700 74 HOH HOH . D 4 HOH A 101 701 42 HOH HOH . D 4 HOH A 102 702 133 HOH HOH . D 4 HOH A 103 703 120 HOH HOH . D 4 HOH A 104 704 98 HOH HOH . D 4 HOH A 105 705 44 HOH HOH . D 4 HOH A 106 706 197 HOH HOH . D 4 HOH A 107 707 34 HOH HOH . D 4 HOH A 108 708 103 HOH HOH . D 4 HOH A 109 709 62 HOH HOH . D 4 HOH A 110 710 39 HOH HOH . D 4 HOH A 111 711 6 HOH HOH . D 4 HOH A 112 712 77 HOH HOH . D 4 HOH A 113 713 205 HOH HOH . D 4 HOH A 114 714 150 HOH HOH . D 4 HOH A 115 715 89 HOH HOH . D 4 HOH A 116 716 29 HOH HOH . D 4 HOH A 117 717 27 HOH HOH . D 4 HOH A 118 718 25 HOH HOH . D 4 HOH A 119 719 163 HOH HOH . D 4 HOH A 120 720 149 HOH HOH . D 4 HOH A 121 721 92 HOH HOH . D 4 HOH A 122 722 121 HOH HOH . D 4 HOH A 123 723 204 HOH HOH . D 4 HOH A 124 724 151 HOH HOH . D 4 HOH A 125 725 203 HOH HOH . D 4 HOH A 126 726 200 HOH HOH . D 4 HOH A 127 727 61 HOH HOH . D 4 HOH A 128 728 185 HOH HOH . D 4 HOH A 129 729 48 HOH HOH . D 4 HOH A 130 730 144 HOH HOH . D 4 HOH A 131 731 65 HOH HOH . D 4 HOH A 132 732 20 HOH HOH . D 4 HOH A 133 733 55 HOH HOH . D 4 HOH A 134 734 195 HOH HOH . D 4 HOH A 135 735 159 HOH HOH . D 4 HOH A 136 736 174 HOH HOH . D 4 HOH A 137 737 157 HOH HOH . D 4 HOH A 138 738 75 HOH HOH . D 4 HOH A 139 739 176 HOH HOH . D 4 HOH A 140 740 108 HOH HOH . D 4 HOH A 141 741 50 HOH HOH . D 4 HOH A 142 742 198 HOH HOH . D 4 HOH A 143 743 171 HOH HOH . D 4 HOH A 144 744 102 HOH HOH . D 4 HOH A 145 745 196 HOH HOH . D 4 HOH A 146 746 127 HOH HOH . D 4 HOH A 147 747 94 HOH HOH . D 4 HOH A 148 748 154 HOH HOH . D 4 HOH A 149 749 189 HOH HOH . D 4 HOH A 150 750 199 HOH HOH . D 4 HOH A 151 751 129 HOH HOH . D 4 HOH A 152 752 107 HOH HOH . D 4 HOH A 153 753 141 HOH HOH . D 4 HOH A 154 754 190 HOH HOH . D 4 HOH A 155 755 136 HOH HOH . D 4 HOH A 156 756 169 HOH HOH . D 4 HOH A 157 757 145 HOH HOH . D 4 HOH A 158 758 99 HOH HOH . D 4 HOH A 159 759 95 HOH HOH . D 4 HOH A 160 760 191 HOH HOH . D 4 HOH A 161 761 201 HOH HOH . E 4 HOH L 1 101 10 HOH HOH . E 4 HOH L 2 102 146 HOH HOH . E 4 HOH L 3 103 122 HOH HOH . E 4 HOH L 4 104 152 HOH HOH . E 4 HOH L 5 105 165 HOH HOH . E 4 HOH L 6 106 130 HOH HOH . E 4 HOH L 7 107 13 HOH HOH . E 4 HOH L 8 108 143 HOH HOH . E 4 HOH L 9 109 202 HOH HOH . E 4 HOH L 10 110 73 HOH HOH . E 4 HOH L 11 111 87 HOH HOH . E 4 HOH L 12 112 21 HOH HOH . E 4 HOH L 13 113 45 HOH HOH . E 4 HOH L 14 114 115 HOH HOH . E 4 HOH L 15 115 71 HOH HOH . E 4 HOH L 16 116 72 HOH HOH . E 4 HOH L 17 117 179 HOH HOH . E 4 HOH L 18 118 104 HOH HOH . E 4 HOH L 19 119 38 HOH HOH . E 4 HOH L 20 120 101 HOH HOH . E 4 HOH L 21 121 35 HOH HOH . E 4 HOH L 22 122 112 HOH HOH . E 4 HOH L 23 123 70 HOH HOH . E 4 HOH L 24 124 181 HOH HOH . E 4 HOH L 25 125 132 HOH HOH . E 4 HOH L 26 126 53 HOH HOH . E 4 HOH L 27 127 14 HOH HOH . E 4 HOH L 28 128 113 HOH HOH . E 4 HOH L 29 129 125 HOH HOH . E 4 HOH L 30 130 78 HOH HOH . E 4 HOH L 31 131 56 HOH HOH . E 4 HOH L 32 132 160 HOH HOH . E 4 HOH L 33 133 126 HOH HOH . E 4 HOH L 34 134 37 HOH HOH . E 4 HOH L 35 135 54 HOH HOH . E 4 HOH L 36 136 36 HOH HOH . E 4 HOH L 37 137 158 HOH HOH . E 4 HOH L 38 138 116 HOH HOH . E 4 HOH L 39 139 147 HOH HOH . E 4 HOH L 40 140 168 HOH HOH . E 4 HOH L 41 141 52 HOH HOH . E 4 HOH L 42 142 105 HOH HOH . E 4 HOH L 43 143 131 HOH HOH . E 4 HOH L 44 144 192 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . C 3 7.763 3.492 22.289 1 31.7 ? C1 MYR 501 A 1 HETATM 2 O O1 MYR . . . C 3 8.353 3.156 23.293 1 33.73 ? O1 MYR 501 A 1 HETATM 3 C C2 MYR . . . C 3 6.996 2.473 21.484 1 33.04 ? C2 MYR 501 A 1 HETATM 4 C C3 MYR . . . C 3 6.554 1.276 22.33 1 33.36 ? C3 MYR 501 A 1 HETATM 5 C C4 MYR . . . C 3 5.053 1.054 22.134 1 33.9 ? C4 MYR 501 A 1 HETATM 6 C C5 MYR . . . C 3 4.497 0.231 23.296 1 34.01 ? C5 MYR 501 A 1 HETATM 7 C C6 MYR . . . C 3 3.119 -0.319 22.915 1 34.57 ? C6 MYR 501 A 1 HETATM 8 C C7 MYR . . . C 3 2.029 0.431 23.68 1 34.39 ? C7 MYR 501 A 1 HETATM 9 C C8 MYR . . . C 3 0.691 0.356 22.941 1 34.58 ? C8 MYR 501 A 1 HETATM 10 C C9 MYR . . . C 3 0.197 1.779 22.681 1 34.61 ? C9 MYR 501 A 1 HETATM 11 C C10 MYR . . . C 3 -1.327 1.841 22.779 1 34.82 ? C10 MYR 501 A 1 HETATM 12 C C11 MYR . . . C 3 -1.88 2.459 21.493 1 35.12 ? C11 MYR 501 A 1 HETATM 13 C C12 MYR . . . C 3 -2.93 3.523 21.822 1 35.08 ? C12 MYR 501 A 1 HETATM 14 C C13 MYR . . . C 3 -2.981 4.553 20.688 1 35.54 ? C13 MYR 501 A 1 HETATM 15 C C14 MYR . . . C 3 -4.194 4.283 19.793 1 35.45 ? C14 MYR 501 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 15 #