data_6GED # _model_server_result.job_id wnMgMLSgx_AQgF260HdVWA _model_server_result.datetime_utc '2024-11-22 11:00:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ged # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 6GED # _exptl.entry_id 6GED _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GED _cell.length_a 32.017 _cell.length_b 93.026 _cell.length_c 99.097 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GED _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 199 A SER 442 1_555 D NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc2 A OG SER 199 A SER 442 1_555 D NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? metalc ? metalc3 A OD1 ASN 201 A ASN 444 1_555 D NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc4 A OE1 GLU 212 A GLU 455 1_555 D NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc5 D NA NA . A NA 601 1_555 F O HOH . A HOH 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc6 D NA NA . A NA 601 1_555 F O HOH . A HOH 794 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? hydrog WATSON-CRICK hydrog1 B N1 DG 1 C DG 1 1_555 C N3 DC 10 D DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 1 C DG 1 1_555 C O2 DC 10 D DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 1 C DG 1 1_555 C N4 DC 10 D DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog4 B N1 DG 2 C DG 2 1_555 C O2 DC 9 D DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog5 B N1 DG 3 C DG 3 1_555 C O6 DG 7 D DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog6 B N2 DG 3 C DG 3 1_555 C O2 DC 8 D DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog7 B O2 DC 4 C DC 4 1_555 C N2 DG 7 D DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N1 DG 5 C DG 5 1_555 C N3 DC 6 D DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N2 DG 5 C DG 5 1_555 C O2 DC 6 D DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O6 DG 5 C DG 5 1_555 C N4 DC 6 D DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog11 B N2 DG 6 C DG 6 1_555 C O2 DC 5 D DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N3 DC 7 C DC 7 1_555 C N1 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N4 DC 7 C DC 7 1_555 C O6 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O2 DC 7 C DC 7 1_555 C N2 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N3 DC 8 C DC 8 1_555 C N1 DG 3 D DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N4 DC 8 C DC 8 1_555 C O6 DG 3 D DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O2 DC 8 C DC 8 1_555 C N2 DG 3 D DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N3 DC 9 C DC 9 1_555 C N1 DG 3 D DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N4 DC 9 C DC 9 1_555 C O6 DG 3 D DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O2 DC 9 C DC 9 1_555 C N2 DG 3 D DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog21 B N2 DG 10 C DG 10 1_555 C N3 DC 1 D DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog22 B N3 DG 10 C DG 10 1_555 C N2 DG 2 D DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 144 n n C1 C2 EDO sing 145 n n C1 H11 EDO sing 146 n n C1 H12 EDO sing 147 n n O1 HO1 EDO sing 148 n n C2 O2 EDO sing 149 n n C2 H21 EDO sing 150 n n C2 H22 EDO sing 151 n n O2 HO2 EDO sing 152 n n # _atom_sites.entry_id 6GED _atom_sites.fract_transf_matrix[1][1] 0.031233 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01075 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010091 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA A 1 601 1 NA NA . E 5 EDO A 1 602 2 EDO EDO . F 6 HOH A 1 701 158 HOH HOH . F 6 HOH A 2 702 127 HOH HOH . F 6 HOH A 3 703 130 HOH HOH . F 6 HOH A 4 704 102 HOH HOH . F 6 HOH A 5 705 159 HOH HOH . F 6 HOH A 6 706 11 HOH HOH . F 6 HOH A 7 707 24 HOH HOH . F 6 HOH A 8 708 121 HOH HOH . F 6 HOH A 9 709 14 HOH HOH . F 6 HOH A 10 710 80 HOH HOH . F 6 HOH A 11 711 54 HOH HOH . F 6 HOH A 12 712 81 HOH HOH . F 6 HOH A 13 713 89 HOH HOH . F 6 HOH A 14 714 32 HOH HOH . F 6 HOH A 15 715 115 HOH HOH . F 6 HOH A 16 716 50 HOH HOH . F 6 HOH A 17 717 137 HOH HOH . F 6 HOH A 18 718 4 HOH HOH . F 6 HOH A 19 719 84 HOH HOH . F 6 HOH A 20 720 45 HOH HOH . F 6 HOH A 21 721 28 HOH HOH . F 6 HOH A 22 722 19 HOH HOH . F 6 HOH A 23 723 3 HOH HOH . F 6 HOH A 24 724 6 HOH HOH . F 6 HOH A 25 725 85 HOH HOH . F 6 HOH A 26 726 21 HOH HOH . F 6 HOH A 27 727 103 HOH HOH . F 6 HOH A 28 728 25 HOH HOH . F 6 HOH A 29 729 13 HOH HOH . F 6 HOH A 30 730 92 HOH HOH . F 6 HOH A 31 731 12 HOH HOH . F 6 HOH A 32 732 39 HOH HOH . F 6 HOH A 33 733 118 HOH HOH . F 6 HOH A 34 734 108 HOH HOH . F 6 HOH A 35 735 35 HOH HOH . F 6 HOH A 36 736 98 HOH HOH . F 6 HOH A 37 737 42 HOH HOH . F 6 HOH A 38 738 117 HOH HOH . F 6 HOH A 39 739 57 HOH HOH . F 6 HOH A 40 740 131 HOH HOH . F 6 HOH A 41 741 58 HOH HOH . F 6 HOH A 42 742 105 HOH HOH . F 6 HOH A 43 743 114 HOH HOH . F 6 HOH A 44 744 64 HOH HOH . F 6 HOH A 45 745 107 HOH HOH . F 6 HOH A 46 746 36 HOH HOH . F 6 HOH A 47 747 56 HOH HOH . F 6 HOH A 48 748 71 HOH HOH . F 6 HOH A 49 749 59 HOH HOH . F 6 HOH A 50 750 149 HOH HOH . F 6 HOH A 51 751 43 HOH HOH . F 6 HOH A 52 752 7 HOH HOH . F 6 HOH A 53 753 99 HOH HOH . F 6 HOH A 54 754 116 HOH HOH . F 6 HOH A 55 755 141 HOH HOH . F 6 HOH A 56 756 154 HOH HOH . F 6 HOH A 57 757 82 HOH HOH . F 6 HOH A 58 758 26 HOH HOH . F 6 HOH A 59 759 138 HOH HOH . F 6 HOH A 60 760 93 HOH HOH . F 6 HOH A 61 761 70 HOH HOH . F 6 HOH A 62 762 46 HOH HOH . F 6 HOH A 63 763 91 HOH HOH . F 6 HOH A 64 764 31 HOH HOH . F 6 HOH A 65 765 111 HOH HOH . F 6 HOH A 66 766 62 HOH HOH . F 6 HOH A 67 767 22 HOH HOH . F 6 HOH A 68 768 101 HOH HOH . F 6 HOH A 69 769 1 HOH HOH . F 6 HOH A 70 770 34 HOH HOH . F 6 HOH A 71 771 74 HOH HOH . F 6 HOH A 72 772 8 HOH HOH . F 6 HOH A 73 773 83 HOH HOH . F 6 HOH A 74 774 38 HOH HOH . F 6 HOH A 75 775 49 HOH HOH . F 6 HOH A 76 776 17 HOH HOH . F 6 HOH A 77 777 79 HOH HOH . F 6 HOH A 78 778 161 HOH HOH . F 6 HOH A 79 779 9 HOH HOH . F 6 HOH A 80 780 20 HOH HOH . F 6 HOH A 81 781 40 HOH HOH . F 6 HOH A 82 782 27 HOH HOH . F 6 HOH A 83 783 5 HOH HOH . F 6 HOH A 84 784 33 HOH HOH . F 6 HOH A 85 785 53 HOH HOH . F 6 HOH A 86 786 160 HOH HOH . F 6 HOH A 87 787 55 HOH HOH . F 6 HOH A 88 788 15 HOH HOH . F 6 HOH A 89 789 72 HOH HOH . F 6 HOH A 90 790 29 HOH HOH . F 6 HOH A 91 791 143 HOH HOH . F 6 HOH A 92 792 68 HOH HOH . F 6 HOH A 93 793 113 HOH HOH . F 6 HOH A 94 794 44 HOH HOH . F 6 HOH A 95 795 75 HOH HOH . F 6 HOH A 96 796 106 HOH HOH . F 6 HOH A 97 797 69 HOH HOH . F 6 HOH A 98 798 16 HOH HOH . F 6 HOH A 99 799 23 HOH HOH . F 6 HOH A 100 800 10 HOH HOH . F 6 HOH A 101 801 136 HOH HOH . F 6 HOH A 102 802 61 HOH HOH . F 6 HOH A 103 803 95 HOH HOH . F 6 HOH A 104 804 37 HOH HOH . F 6 HOH A 105 805 87 HOH HOH . F 6 HOH A 106 806 30 HOH HOH . F 6 HOH A 107 807 125 HOH HOH . F 6 HOH A 108 808 151 HOH HOH . F 6 HOH A 109 809 52 HOH HOH . F 6 HOH A 110 810 110 HOH HOH . F 6 HOH A 111 811 67 HOH HOH . F 6 HOH A 112 812 100 HOH HOH . F 6 HOH A 113 813 2 HOH HOH . F 6 HOH A 114 814 73 HOH HOH . F 6 HOH A 115 815 97 HOH HOH . F 6 HOH A 116 816 51 HOH HOH . F 6 HOH A 117 817 41 HOH HOH . F 6 HOH A 118 818 150 HOH HOH . F 6 HOH A 119 819 104 HOH HOH . F 6 HOH A 120 820 129 HOH HOH . F 6 HOH A 121 821 18 HOH HOH . F 6 HOH A 122 822 66 HOH HOH . F 6 HOH A 123 823 124 HOH HOH . F 6 HOH A 124 824 76 HOH HOH . F 6 HOH A 125 825 147 HOH HOH . F 6 HOH A 126 826 133 HOH HOH . F 6 HOH A 127 827 152 HOH HOH . F 6 HOH A 128 828 157 HOH HOH . F 6 HOH A 129 829 90 HOH HOH . F 6 HOH A 130 830 109 HOH HOH . F 6 HOH A 131 831 122 HOH HOH . F 6 HOH A 132 832 60 HOH HOH . F 6 HOH A 133 833 120 HOH HOH . F 6 HOH A 134 834 162 HOH HOH . F 6 HOH A 135 835 119 HOH HOH . F 6 HOH A 136 836 88 HOH HOH . F 6 HOH A 137 837 65 HOH HOH . F 6 HOH A 138 838 126 HOH HOH . F 6 HOH A 139 839 47 HOH HOH . F 6 HOH A 140 840 94 HOH HOH . F 6 HOH A 141 841 63 HOH HOH . F 6 HOH A 142 842 144 HOH HOH . F 6 HOH A 143 843 96 HOH HOH . F 6 HOH A 144 844 135 HOH HOH . F 6 HOH A 145 845 77 HOH HOH . F 6 HOH A 146 846 139 HOH HOH . F 6 HOH A 147 847 86 HOH HOH . F 6 HOH A 148 848 48 HOH HOH . F 6 HOH A 149 849 155 HOH HOH . F 6 HOH A 150 850 153 HOH HOH . F 6 HOH A 151 851 148 HOH HOH . F 6 HOH A 152 852 112 HOH HOH . F 6 HOH A 153 853 123 HOH HOH . F 6 HOH A 154 854 134 HOH HOH . F 6 HOH A 155 855 78 HOH HOH . F 6 HOH A 156 856 146 HOH HOH . F 6 HOH A 157 857 128 HOH HOH . G 6 HOH C 1 101 140 HOH HOH . G 6 HOH C 2 102 145 HOH HOH . H 6 HOH D 1 101 156 HOH HOH . H 6 HOH D 2 102 132 HOH HOH . H 6 HOH D 3 103 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 5 26.014 32.829 15.412 1 48.37 ? C1 EDO 602 A 1 HETATM 2 O O1 EDO . . . E 5 25.449 33.131 14.127 1 49.25 ? O1 EDO 602 A 1 HETATM 3 C C2 EDO . . . E 5 27.334 32.103 15.206 1 48.73 ? C2 EDO 602 A 1 HETATM 4 O O2 EDO . . . E 5 27.966 32.692 14.063 1 48.91 ? O2 EDO 602 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #