data_6GEE # _model_server_result.job_id QI2_uhbAVjFq21c9Mdg-2A _model_server_result.datetime_utc '2024-11-17 01:39:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gee # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6GEE # _exptl.entry_id 6GEE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GEE _cell.length_a 59.315 _cell.length_b 59.315 _cell.length_c 158.31 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GEE _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 152 A CYS 367 1_555 C C1 MYR . A MYR 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.789 ? covale ? covale2 B C ACE 1 L ACE 59 1_555 B N ASP 2 L ASP 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 243 n n C1 O2 MYR sing 244 n n C1 C2 MYR sing 245 n n O2 HO2 MYR sing 246 n n C2 C3 MYR sing 247 n n C2 H21 MYR sing 248 n n C2 H22 MYR sing 249 n n C3 C4 MYR sing 250 n n C3 H31 MYR sing 251 n n C3 H32 MYR sing 252 n n C4 C5 MYR sing 253 n n C4 H41 MYR sing 254 n n C4 H42 MYR sing 255 n n C5 C6 MYR sing 256 n n C5 H51 MYR sing 257 n n C5 H52 MYR sing 258 n n C6 C7 MYR sing 259 n n C6 H61 MYR sing 260 n n C6 H62 MYR sing 261 n n C7 C8 MYR sing 262 n n C7 H71 MYR sing 263 n n C7 H72 MYR sing 264 n n C8 C9 MYR sing 265 n n C8 H81 MYR sing 266 n n C8 H82 MYR sing 267 n n C9 C10 MYR sing 268 n n C9 H91 MYR sing 269 n n C9 H92 MYR sing 270 n n C10 C11 MYR sing 271 n n C10 H101 MYR sing 272 n n C10 H102 MYR sing 273 n n C11 C12 MYR sing 274 n n C11 H111 MYR sing 275 n n C11 H112 MYR sing 276 n n C12 C13 MYR sing 277 n n C12 H121 MYR sing 278 n n C12 H122 MYR sing 279 n n C13 C14 MYR sing 280 n n C13 H131 MYR sing 281 n n C13 H132 MYR sing 282 n n C14 H141 MYR sing 283 n n C14 H142 MYR sing 284 n n C14 H143 MYR sing 285 n n # _atom_sites.entry_id 6GEE _atom_sites.fract_transf_matrix[1][1] 0.016859 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016859 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006317 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MYR A 1 501 1 MYR MYR . D 4 HOH A 1 601 119 HOH HOH . D 4 HOH A 2 602 50 HOH HOH . D 4 HOH A 3 603 172 HOH HOH . D 4 HOH A 4 604 86 HOH HOH . D 4 HOH A 5 605 30 HOH HOH . D 4 HOH A 6 606 9 HOH HOH . D 4 HOH A 7 607 111 HOH HOH . D 4 HOH A 8 608 51 HOH HOH . D 4 HOH A 9 609 52 HOH HOH . D 4 HOH A 10 610 121 HOH HOH . D 4 HOH A 11 611 17 HOH HOH . D 4 HOH A 12 612 11 HOH HOH . D 4 HOH A 13 613 38 HOH HOH . D 4 HOH A 14 614 22 HOH HOH . D 4 HOH A 15 615 85 HOH HOH . D 4 HOH A 16 616 59 HOH HOH . D 4 HOH A 17 617 64 HOH HOH . D 4 HOH A 18 618 193 HOH HOH . D 4 HOH A 19 619 1 HOH HOH . D 4 HOH A 20 620 128 HOH HOH . D 4 HOH A 21 621 23 HOH HOH . D 4 HOH A 22 622 221 HOH HOH . D 4 HOH A 23 623 10 HOH HOH . D 4 HOH A 24 624 93 HOH HOH . D 4 HOH A 25 625 43 HOH HOH . D 4 HOH A 26 626 129 HOH HOH . D 4 HOH A 27 627 159 HOH HOH . D 4 HOH A 28 628 87 HOH HOH . D 4 HOH A 29 629 29 HOH HOH . D 4 HOH A 30 630 186 HOH HOH . D 4 HOH A 31 631 95 HOH HOH . D 4 HOH A 32 632 68 HOH HOH . D 4 HOH A 33 633 201 HOH HOH . D 4 HOH A 34 634 134 HOH HOH . D 4 HOH A 35 635 65 HOH HOH . D 4 HOH A 36 636 137 HOH HOH . D 4 HOH A 37 637 31 HOH HOH . D 4 HOH A 38 638 45 HOH HOH . D 4 HOH A 39 639 183 HOH HOH . D 4 HOH A 40 640 25 HOH HOH . D 4 HOH A 41 641 61 HOH HOH . D 4 HOH A 42 642 92 HOH HOH . D 4 HOH A 43 643 192 HOH HOH . D 4 HOH A 44 644 200 HOH HOH . D 4 HOH A 45 645 36 HOH HOH . D 4 HOH A 46 646 71 HOH HOH . D 4 HOH A 47 647 114 HOH HOH . D 4 HOH A 48 648 158 HOH HOH . D 4 HOH A 49 649 40 HOH HOH . D 4 HOH A 50 650 125 HOH HOH . D 4 HOH A 51 651 133 HOH HOH . D 4 HOH A 52 652 21 HOH HOH . D 4 HOH A 53 653 37 HOH HOH . D 4 HOH A 54 654 189 HOH HOH . D 4 HOH A 55 655 113 HOH HOH . D 4 HOH A 56 656 204 HOH HOH . D 4 HOH A 57 657 160 HOH HOH . D 4 HOH A 58 658 110 HOH HOH . D 4 HOH A 59 659 26 HOH HOH . D 4 HOH A 60 660 18 HOH HOH . D 4 HOH A 61 661 141 HOH HOH . D 4 HOH A 62 662 46 HOH HOH . D 4 HOH A 63 663 194 HOH HOH . D 4 HOH A 64 664 78 HOH HOH . D 4 HOH A 65 665 171 HOH HOH . D 4 HOH A 66 666 166 HOH HOH . D 4 HOH A 67 667 131 HOH HOH . D 4 HOH A 68 668 130 HOH HOH . D 4 HOH A 69 669 3 HOH HOH . D 4 HOH A 70 670 140 HOH HOH . D 4 HOH A 71 671 218 HOH HOH . D 4 HOH A 72 672 100 HOH HOH . D 4 HOH A 73 673 96 HOH HOH . D 4 HOH A 74 674 79 HOH HOH . D 4 HOH A 75 675 90 HOH HOH . D 4 HOH A 76 676 143 HOH HOH . D 4 HOH A 77 677 170 HOH HOH . D 4 HOH A 78 678 197 HOH HOH . D 4 HOH A 79 679 146 HOH HOH . D 4 HOH A 80 680 136 HOH HOH . D 4 HOH A 81 681 99 HOH HOH . D 4 HOH A 82 682 83 HOH HOH . D 4 HOH A 83 683 207 HOH HOH . D 4 HOH A 84 684 126 HOH HOH . D 4 HOH A 85 685 13 HOH HOH . D 4 HOH A 86 686 14 HOH HOH . D 4 HOH A 87 687 98 HOH HOH . D 4 HOH A 88 688 176 HOH HOH . D 4 HOH A 89 689 162 HOH HOH . D 4 HOH A 90 690 203 HOH HOH . D 4 HOH A 91 691 4 HOH HOH . D 4 HOH A 92 692 181 HOH HOH . D 4 HOH A 93 693 157 HOH HOH . D 4 HOH A 94 694 148 HOH HOH . D 4 HOH A 95 695 164 HOH HOH . D 4 HOH A 96 696 116 HOH HOH . D 4 HOH A 97 697 132 HOH HOH . D 4 HOH A 98 698 191 HOH HOH . D 4 HOH A 99 699 24 HOH HOH . D 4 HOH A 100 700 33 HOH HOH . D 4 HOH A 101 701 104 HOH HOH . D 4 HOH A 102 702 102 HOH HOH . D 4 HOH A 103 703 19 HOH HOH . D 4 HOH A 104 704 188 HOH HOH . D 4 HOH A 105 705 42 HOH HOH . D 4 HOH A 106 706 155 HOH HOH . D 4 HOH A 107 707 152 HOH HOH . D 4 HOH A 108 708 5 HOH HOH . D 4 HOH A 109 709 76 HOH HOH . D 4 HOH A 110 710 184 HOH HOH . D 4 HOH A 111 711 177 HOH HOH . D 4 HOH A 112 712 219 HOH HOH . D 4 HOH A 113 713 2 HOH HOH . D 4 HOH A 114 714 156 HOH HOH . D 4 HOH A 115 715 82 HOH HOH . D 4 HOH A 116 716 15 HOH HOH . D 4 HOH A 117 717 49 HOH HOH . D 4 HOH A 118 718 209 HOH HOH . D 4 HOH A 119 719 35 HOH HOH . D 4 HOH A 120 720 180 HOH HOH . D 4 HOH A 121 721 34 HOH HOH . D 4 HOH A 122 722 167 HOH HOH . D 4 HOH A 123 723 97 HOH HOH . D 4 HOH A 124 724 63 HOH HOH . D 4 HOH A 125 725 142 HOH HOH . D 4 HOH A 126 726 47 HOH HOH . D 4 HOH A 127 727 88 HOH HOH . D 4 HOH A 128 728 48 HOH HOH . D 4 HOH A 129 729 41 HOH HOH . D 4 HOH A 130 730 122 HOH HOH . D 4 HOH A 131 731 39 HOH HOH . D 4 HOH A 132 732 72 HOH HOH . D 4 HOH A 133 733 20 HOH HOH . D 4 HOH A 134 734 214 HOH HOH . D 4 HOH A 135 735 32 HOH HOH . D 4 HOH A 136 736 8 HOH HOH . D 4 HOH A 137 737 112 HOH HOH . D 4 HOH A 138 738 66 HOH HOH . D 4 HOH A 139 739 75 HOH HOH . D 4 HOH A 140 740 109 HOH HOH . D 4 HOH A 141 741 44 HOH HOH . D 4 HOH A 142 742 60 HOH HOH . D 4 HOH A 143 743 89 HOH HOH . D 4 HOH A 144 744 173 HOH HOH . D 4 HOH A 145 745 151 HOH HOH . D 4 HOH A 146 746 84 HOH HOH . D 4 HOH A 147 747 56 HOH HOH . D 4 HOH A 148 748 118 HOH HOH . D 4 HOH A 149 749 62 HOH HOH . D 4 HOH A 150 750 222 HOH HOH . D 4 HOH A 151 751 144 HOH HOH . D 4 HOH A 152 752 174 HOH HOH . D 4 HOH A 153 753 210 HOH HOH . D 4 HOH A 154 754 123 HOH HOH . D 4 HOH A 155 755 163 HOH HOH . D 4 HOH A 156 756 182 HOH HOH . D 4 HOH A 157 757 213 HOH HOH . D 4 HOH A 158 758 215 HOH HOH . D 4 HOH A 159 759 150 HOH HOH . D 4 HOH A 160 760 217 HOH HOH . D 4 HOH A 161 761 124 HOH HOH . D 4 HOH A 162 762 69 HOH HOH . D 4 HOH A 163 763 202 HOH HOH . D 4 HOH A 164 764 145 HOH HOH . D 4 HOH A 165 765 212 HOH HOH . D 4 HOH A 166 766 139 HOH HOH . D 4 HOH A 167 767 169 HOH HOH . D 4 HOH A 168 768 74 HOH HOH . D 4 HOH A 169 769 165 HOH HOH . D 4 HOH A 170 770 106 HOH HOH . D 4 HOH A 171 771 198 HOH HOH . D 4 HOH A 172 772 187 HOH HOH . D 4 HOH A 173 773 149 HOH HOH . D 4 HOH A 174 774 127 HOH HOH . E 4 HOH L 1 101 6 HOH HOH . E 4 HOH L 2 102 178 HOH HOH . E 4 HOH L 3 103 103 HOH HOH . E 4 HOH L 4 104 53 HOH HOH . E 4 HOH L 5 105 195 HOH HOH . E 4 HOH L 6 106 7 HOH HOH . E 4 HOH L 7 107 168 HOH HOH . E 4 HOH L 8 108 70 HOH HOH . E 4 HOH L 9 109 120 HOH HOH . E 4 HOH L 10 110 220 HOH HOH . E 4 HOH L 11 111 190 HOH HOH . E 4 HOH L 12 112 105 HOH HOH . E 4 HOH L 13 113 223 HOH HOH . E 4 HOH L 14 114 154 HOH HOH . E 4 HOH L 15 115 73 HOH HOH . E 4 HOH L 16 116 179 HOH HOH . E 4 HOH L 17 117 54 HOH HOH . E 4 HOH L 18 118 115 HOH HOH . E 4 HOH L 19 119 28 HOH HOH . E 4 HOH L 20 120 153 HOH HOH . E 4 HOH L 21 121 138 HOH HOH . E 4 HOH L 22 122 80 HOH HOH . E 4 HOH L 23 123 205 HOH HOH . E 4 HOH L 24 124 208 HOH HOH . E 4 HOH L 25 125 77 HOH HOH . E 4 HOH L 26 126 94 HOH HOH . E 4 HOH L 27 127 81 HOH HOH . E 4 HOH L 28 128 91 HOH HOH . E 4 HOH L 29 129 12 HOH HOH . E 4 HOH L 30 130 58 HOH HOH . E 4 HOH L 31 131 199 HOH HOH . E 4 HOH L 32 132 55 HOH HOH . E 4 HOH L 33 133 27 HOH HOH . E 4 HOH L 34 134 147 HOH HOH . E 4 HOH L 35 135 57 HOH HOH . E 4 HOH L 36 136 101 HOH HOH . E 4 HOH L 37 137 67 HOH HOH . E 4 HOH L 38 138 196 HOH HOH . E 4 HOH L 39 139 135 HOH HOH . E 4 HOH L 40 140 107 HOH HOH . E 4 HOH L 41 141 117 HOH HOH . E 4 HOH L 42 142 161 HOH HOH . E 4 HOH L 43 143 175 HOH HOH . E 4 HOH L 44 144 216 HOH HOH . E 4 HOH L 45 145 108 HOH HOH . E 4 HOH L 46 146 16 HOH HOH . E 4 HOH L 47 147 206 HOH HOH . E 4 HOH L 48 148 185 HOH HOH . E 4 HOH L 49 149 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . C 3 7.415 3.311 22.448 1 35.72 ? C1 MYR 501 A 1 HETATM 2 O O1 MYR . . . C 3 7.821 3.063 23.563 1 37.48 ? O1 MYR 501 A 1 HETATM 3 C C2 MYR . . . C 3 6.562 2.285 21.745 1 36.76 ? C2 MYR 501 A 1 HETATM 4 C C3 MYR . . . C 3 6.287 1.044 22.602 1 37.07 ? C3 MYR 501 A 1 HETATM 5 C C4 MYR . . . C 3 4.879 0.547 22.267 1 37.36 ? C4 MYR 501 A 1 HETATM 6 C C5 MYR . . . C 3 4.302 -0.254 23.435 1 37.29 ? C5 MYR 501 A 1 HETATM 7 C C6 MYR . . . C 3 2.903 -0.753 23.065 1 37.81 ? C6 MYR 501 A 1 HETATM 8 C C7 MYR . . . C 3 1.842 0.121 23.737 1 38.09 ? C7 MYR 501 A 1 HETATM 9 C C8 MYR . . . C 3 0.518 0.066 22.97 1 38.27 ? C8 MYR 501 A 1 HETATM 10 C C9 MYR . . . C 3 -0.029 1.489 22.852 1 38.66 ? C9 MYR 501 A 1 HETATM 11 C C10 MYR . . . C 3 -1.552 1.479 22.742 1 39.19 ? C10 MYR 501 A 1 HETATM 12 C C11 MYR . . . C 3 -1.957 2.277 21.502 1 39.99 ? C11 MYR 501 A 1 HETATM 13 C C12 MYR . . . C 3 -2.965 3.37 21.87 1 40 ? C12 MYR 501 A 1 HETATM 14 C C13 MYR . . . C 3 -3.032 4.401 20.738 1 40.51 ? C13 MYR 501 A 1 HETATM 15 C C14 MYR . . . C 3 -4.232 4.11 19.832 1 40.63 ? C14 MYR 501 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 379 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #