data_6GEI # _model_server_result.job_id BHt55F0DwVHQrGklWmPzIA _model_server_result.datetime_utc '2025-03-09 02:11:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gei # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6GEI # _exptl.entry_id 6GEI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GEI _cell.length_a 59.036 _cell.length_b 59.036 _cell.length_c 158.969 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GEI _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 129 A LYS 344 1_555 C C1 MYR . A MYR 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 B C ACE 1 L ACE 59 1_555 B N ASP 2 L ASP 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 243 n n C1 O2 MYR sing 244 n n C1 C2 MYR sing 245 n n O2 HO2 MYR sing 246 n n C2 C3 MYR sing 247 n n C2 H21 MYR sing 248 n n C2 H22 MYR sing 249 n n C3 C4 MYR sing 250 n n C3 H31 MYR sing 251 n n C3 H32 MYR sing 252 n n C4 C5 MYR sing 253 n n C4 H41 MYR sing 254 n n C4 H42 MYR sing 255 n n C5 C6 MYR sing 256 n n C5 H51 MYR sing 257 n n C5 H52 MYR sing 258 n n C6 C7 MYR sing 259 n n C6 H61 MYR sing 260 n n C6 H62 MYR sing 261 n n C7 C8 MYR sing 262 n n C7 H71 MYR sing 263 n n C7 H72 MYR sing 264 n n C8 C9 MYR sing 265 n n C8 H81 MYR sing 266 n n C8 H82 MYR sing 267 n n C9 C10 MYR sing 268 n n C9 H91 MYR sing 269 n n C9 H92 MYR sing 270 n n C10 C11 MYR sing 271 n n C10 H101 MYR sing 272 n n C10 H102 MYR sing 273 n n C11 C12 MYR sing 274 n n C11 H111 MYR sing 275 n n C11 H112 MYR sing 276 n n C12 C13 MYR sing 277 n n C12 H121 MYR sing 278 n n C12 H122 MYR sing 279 n n C13 C14 MYR sing 280 n n C13 H131 MYR sing 281 n n C13 H132 MYR sing 282 n n C14 H141 MYR sing 283 n n C14 H142 MYR sing 284 n n C14 H143 MYR sing 285 n n # _atom_sites.entry_id 6GEI _atom_sites.fract_transf_matrix[1][1] 0.016939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006291 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MYR A 1 501 1 MYR MYR . D 4 PO4 A 1 502 1 PO4 PO4 . E 5 HOH A 1 601 132 HOH HOH . E 5 HOH A 2 602 51 HOH HOH . E 5 HOH A 3 603 6 HOH HOH . E 5 HOH A 4 604 46 HOH HOH . E 5 HOH A 5 605 40 HOH HOH . E 5 HOH A 6 606 108 HOH HOH . E 5 HOH A 7 607 41 HOH HOH . E 5 HOH A 8 608 144 HOH HOH . E 5 HOH A 9 609 14 HOH HOH . E 5 HOH A 10 610 11 HOH HOH . E 5 HOH A 11 611 223 HOH HOH . E 5 HOH A 12 612 65 HOH HOH . E 5 HOH A 13 613 72 HOH HOH . E 5 HOH A 14 614 224 HOH HOH . E 5 HOH A 15 615 146 HOH HOH . E 5 HOH A 16 616 47 HOH HOH . E 5 HOH A 17 617 126 HOH HOH . E 5 HOH A 18 618 190 HOH HOH . E 5 HOH A 19 619 139 HOH HOH . E 5 HOH A 20 620 94 HOH HOH . E 5 HOH A 21 621 23 HOH HOH . E 5 HOH A 22 622 219 HOH HOH . E 5 HOH A 23 623 122 HOH HOH . E 5 HOH A 24 624 45 HOH HOH . E 5 HOH A 25 625 93 HOH HOH . E 5 HOH A 26 626 110 HOH HOH . E 5 HOH A 27 627 149 HOH HOH . E 5 HOH A 28 628 5 HOH HOH . E 5 HOH A 29 629 4 HOH HOH . E 5 HOH A 30 630 26 HOH HOH . E 5 HOH A 31 631 191 HOH HOH . E 5 HOH A 32 632 114 HOH HOH . E 5 HOH A 33 633 7 HOH HOH . E 5 HOH A 34 634 81 HOH HOH . E 5 HOH A 35 635 213 HOH HOH . E 5 HOH A 36 636 137 HOH HOH . E 5 HOH A 37 637 152 HOH HOH . E 5 HOH A 38 638 217 HOH HOH . E 5 HOH A 39 639 59 HOH HOH . E 5 HOH A 40 640 103 HOH HOH . E 5 HOH A 41 641 127 HOH HOH . E 5 HOH A 42 642 106 HOH HOH . E 5 HOH A 43 643 104 HOH HOH . E 5 HOH A 44 644 74 HOH HOH . E 5 HOH A 45 645 192 HOH HOH . E 5 HOH A 46 646 102 HOH HOH . E 5 HOH A 47 647 161 HOH HOH . E 5 HOH A 48 648 92 HOH HOH . E 5 HOH A 49 649 200 HOH HOH . E 5 HOH A 50 650 183 HOH HOH . E 5 HOH A 51 651 84 HOH HOH . E 5 HOH A 52 652 42 HOH HOH . E 5 HOH A 53 653 218 HOH HOH . E 5 HOH A 54 654 170 HOH HOH . E 5 HOH A 55 655 58 HOH HOH . E 5 HOH A 56 656 150 HOH HOH . E 5 HOH A 57 657 222 HOH HOH . E 5 HOH A 58 658 135 HOH HOH . E 5 HOH A 59 659 203 HOH HOH . E 5 HOH A 60 660 118 HOH HOH . E 5 HOH A 61 661 166 HOH HOH . E 5 HOH A 62 662 158 HOH HOH . E 5 HOH A 63 663 99 HOH HOH . E 5 HOH A 64 664 38 HOH HOH . E 5 HOH A 65 665 117 HOH HOH . E 5 HOH A 66 666 10 HOH HOH . E 5 HOH A 67 667 34 HOH HOH . E 5 HOH A 68 668 125 HOH HOH . E 5 HOH A 69 669 105 HOH HOH . E 5 HOH A 70 670 129 HOH HOH . E 5 HOH A 71 671 20 HOH HOH . E 5 HOH A 72 672 173 HOH HOH . E 5 HOH A 73 673 97 HOH HOH . E 5 HOH A 74 674 215 HOH HOH . E 5 HOH A 75 675 123 HOH HOH . E 5 HOH A 76 676 25 HOH HOH . E 5 HOH A 77 677 1 HOH HOH . E 5 HOH A 78 678 78 HOH HOH . E 5 HOH A 79 679 168 HOH HOH . E 5 HOH A 80 680 9 HOH HOH . E 5 HOH A 81 681 163 HOH HOH . E 5 HOH A 82 682 182 HOH HOH . E 5 HOH A 83 683 142 HOH HOH . E 5 HOH A 84 684 35 HOH HOH . E 5 HOH A 85 685 28 HOH HOH . E 5 HOH A 86 686 8 HOH HOH . E 5 HOH A 87 687 115 HOH HOH . E 5 HOH A 88 688 43 HOH HOH . E 5 HOH A 89 689 48 HOH HOH . E 5 HOH A 90 690 138 HOH HOH . E 5 HOH A 91 691 220 HOH HOH . E 5 HOH A 92 692 89 HOH HOH . E 5 HOH A 93 693 151 HOH HOH . E 5 HOH A 94 694 179 HOH HOH . E 5 HOH A 95 695 70 HOH HOH . E 5 HOH A 96 696 18 HOH HOH . E 5 HOH A 97 697 32 HOH HOH . E 5 HOH A 98 698 15 HOH HOH . E 5 HOH A 99 699 33 HOH HOH . E 5 HOH A 100 700 211 HOH HOH . E 5 HOH A 101 701 153 HOH HOH . E 5 HOH A 102 702 87 HOH HOH . E 5 HOH A 103 703 210 HOH HOH . E 5 HOH A 104 704 27 HOH HOH . E 5 HOH A 105 705 55 HOH HOH . E 5 HOH A 106 706 64 HOH HOH . E 5 HOH A 107 707 61 HOH HOH . E 5 HOH A 108 708 56 HOH HOH . E 5 HOH A 109 709 116 HOH HOH . E 5 HOH A 110 710 147 HOH HOH . E 5 HOH A 111 711 13 HOH HOH . E 5 HOH A 112 712 178 HOH HOH . E 5 HOH A 113 713 159 HOH HOH . E 5 HOH A 114 714 134 HOH HOH . E 5 HOH A 115 715 3 HOH HOH . E 5 HOH A 116 716 167 HOH HOH . E 5 HOH A 117 717 24 HOH HOH . E 5 HOH A 118 718 67 HOH HOH . E 5 HOH A 119 719 133 HOH HOH . E 5 HOH A 120 720 85 HOH HOH . E 5 HOH A 121 721 19 HOH HOH . E 5 HOH A 122 722 50 HOH HOH . E 5 HOH A 123 723 205 HOH HOH . E 5 HOH A 124 724 221 HOH HOH . E 5 HOH A 125 725 112 HOH HOH . E 5 HOH A 126 726 174 HOH HOH . E 5 HOH A 127 727 157 HOH HOH . E 5 HOH A 128 728 62 HOH HOH . E 5 HOH A 129 729 109 HOH HOH . E 5 HOH A 130 730 37 HOH HOH . E 5 HOH A 131 731 60 HOH HOH . E 5 HOH A 132 732 155 HOH HOH . E 5 HOH A 133 733 22 HOH HOH . E 5 HOH A 134 734 96 HOH HOH . E 5 HOH A 135 735 185 HOH HOH . E 5 HOH A 136 736 212 HOH HOH . E 5 HOH A 137 737 208 HOH HOH . E 5 HOH A 138 738 130 HOH HOH . E 5 HOH A 139 739 107 HOH HOH . E 5 HOH A 140 740 198 HOH HOH . E 5 HOH A 141 741 180 HOH HOH . E 5 HOH A 142 742 195 HOH HOH . E 5 HOH A 143 743 181 HOH HOH . E 5 HOH A 144 744 188 HOH HOH . E 5 HOH A 145 745 30 HOH HOH . E 5 HOH A 146 746 73 HOH HOH . E 5 HOH A 147 747 207 HOH HOH . E 5 HOH A 148 748 169 HOH HOH . E 5 HOH A 149 749 171 HOH HOH . E 5 HOH A 150 750 186 HOH HOH . E 5 HOH A 151 751 83 HOH HOH . E 5 HOH A 152 752 86 HOH HOH . E 5 HOH A 153 753 69 HOH HOH . E 5 HOH A 154 754 214 HOH HOH . E 5 HOH A 155 755 172 HOH HOH . E 5 HOH A 156 756 39 HOH HOH . E 5 HOH A 157 757 91 HOH HOH . E 5 HOH A 158 758 202 HOH HOH . E 5 HOH A 159 759 77 HOH HOH . E 5 HOH A 160 760 216 HOH HOH . E 5 HOH A 161 761 156 HOH HOH . E 5 HOH A 162 762 194 HOH HOH . E 5 HOH A 163 763 199 HOH HOH . E 5 HOH A 164 764 63 HOH HOH . E 5 HOH A 165 765 164 HOH HOH . E 5 HOH A 166 766 143 HOH HOH . E 5 HOH A 167 767 80 HOH HOH . E 5 HOH A 168 768 75 HOH HOH . E 5 HOH A 169 769 204 HOH HOH . E 5 HOH A 170 770 206 HOH HOH . E 5 HOH A 171 771 148 HOH HOH . F 5 HOH L 1 201 12 HOH HOH . F 5 HOH L 2 202 162 HOH HOH . F 5 HOH L 3 203 225 HOH HOH . F 5 HOH L 4 204 16 HOH HOH . F 5 HOH L 5 205 113 HOH HOH . F 5 HOH L 6 206 66 HOH HOH . F 5 HOH L 7 207 90 HOH HOH . F 5 HOH L 8 208 79 HOH HOH . F 5 HOH L 9 209 111 HOH HOH . F 5 HOH L 10 210 2 HOH HOH . F 5 HOH L 11 211 21 HOH HOH . F 5 HOH L 12 212 124 HOH HOH . F 5 HOH L 13 213 95 HOH HOH . F 5 HOH L 14 214 136 HOH HOH . F 5 HOH L 15 215 176 HOH HOH . F 5 HOH L 16 216 52 HOH HOH . F 5 HOH L 17 217 88 HOH HOH . F 5 HOH L 18 218 165 HOH HOH . F 5 HOH L 19 219 53 HOH HOH . F 5 HOH L 20 220 82 HOH HOH . F 5 HOH L 21 221 197 HOH HOH . F 5 HOH L 22 222 184 HOH HOH . F 5 HOH L 23 223 71 HOH HOH . F 5 HOH L 24 224 101 HOH HOH . F 5 HOH L 25 225 17 HOH HOH . F 5 HOH L 26 226 29 HOH HOH . F 5 HOH L 27 227 196 HOH HOH . F 5 HOH L 28 228 68 HOH HOH . F 5 HOH L 29 229 57 HOH HOH . F 5 HOH L 30 230 98 HOH HOH . F 5 HOH L 31 231 76 HOH HOH . F 5 HOH L 32 232 175 HOH HOH . F 5 HOH L 33 233 120 HOH HOH . F 5 HOH L 34 234 54 HOH HOH . F 5 HOH L 35 235 36 HOH HOH . F 5 HOH L 36 236 121 HOH HOH . F 5 HOH L 37 237 131 HOH HOH . F 5 HOH L 38 238 49 HOH HOH . F 5 HOH L 39 239 160 HOH HOH . F 5 HOH L 40 240 31 HOH HOH . F 5 HOH L 41 241 128 HOH HOH . F 5 HOH L 42 242 187 HOH HOH . F 5 HOH L 43 243 209 HOH HOH . F 5 HOH L 44 244 154 HOH HOH . F 5 HOH L 45 245 189 HOH HOH . F 5 HOH L 46 246 119 HOH HOH . F 5 HOH L 47 247 177 HOH HOH . F 5 HOH L 48 248 145 HOH HOH . F 5 HOH L 49 249 193 HOH HOH . F 5 HOH L 50 250 100 HOH HOH . F 5 HOH L 51 251 140 HOH HOH . F 5 HOH L 52 252 44 HOH HOH . F 5 HOH L 53 253 201 HOH HOH . F 5 HOH L 54 254 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . C 3 7.015 1.629 23.52 1 27.77 ? C1 MYR 501 A 1 HETATM 2 O O1 MYR . . . C 3 6.809 2.822 23.539 1 26.92 ? O1 MYR 501 A 1 HETATM 3 C C2 MYR . . . C 3 6.044 0.689 22.859 1 28.58 ? C2 MYR 501 A 1 HETATM 4 C C3 MYR . . . C 3 5.047 0.168 23.894 1 29.22 ? C3 MYR 501 A 1 HETATM 5 C C4 MYR . . . C 3 3.873 -0.517 23.192 1 29.97 ? C4 MYR 501 A 1 HETATM 6 C C5 MYR . . . C 3 2.762 0.504 22.948 1 30.44 ? C5 MYR 501 A 1 HETATM 7 C C6 MYR . . . C 3 1.516 0.111 23.741 1 30.85 ? C6 MYR 501 A 1 HETATM 8 C C7 MYR . . . C 3 0.262 0.353 22.901 1 31.41 ? C7 MYR 501 A 1 HETATM 9 C C8 MYR . . . C 3 -0.17 1.818 23.007 1 31.49 ? C8 MYR 501 A 1 HETATM 10 C C9 MYR . . . C 3 -1.684 1.926 22.836 1 31.84 ? C9 MYR 501 A 1 HETATM 11 C C10 MYR . . . C 3 -2.096 3.382 23.044 1 32.2 ? C10 MYR 501 A 1 HETATM 12 C C11 MYR . . . C 3 -3.379 3.674 22.266 1 32.29 ? C11 MYR 501 A 1 HETATM 13 C C12 MYR . . . C 3 -3.07 4.562 21.057 1 32.52 ? C12 MYR 501 A 1 HETATM 14 C C13 MYR . . . C 3 -3.228 3.755 19.766 1 32.79 ? C13 MYR 501 A 1 HETATM 15 C C14 MYR . . . C 3 -4.688 3.792 19.306 1 32.51 ? C14 MYR 501 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #