data_6GEI # _model_server_result.job_id ZXvoIbWuq4-TkyLHKxCdTQ _model_server_result.datetime_utc '2025-03-09 02:20:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gei # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 6GEI # _exptl.entry_id 6GEI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GEI _cell.length_a 59.036 _cell.length_b 59.036 _cell.length_c 158.969 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GEI _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 129 A LYS 344 1_555 C C1 MYR . A MYR 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 B C ACE 1 L ACE 59 1_555 B N ASP 2 L ASP 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 309 n n P O2 PO4 sing 310 n n P O3 PO4 sing 311 n n P O4 PO4 sing 312 n n # _atom_sites.entry_id 6GEI _atom_sites.fract_transf_matrix[1][1] 0.016939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006291 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MYR A 1 501 1 MYR MYR . D 4 PO4 A 1 502 1 PO4 PO4 . E 5 HOH A 1 601 132 HOH HOH . E 5 HOH A 2 602 51 HOH HOH . E 5 HOH A 3 603 6 HOH HOH . E 5 HOH A 4 604 46 HOH HOH . E 5 HOH A 5 605 40 HOH HOH . E 5 HOH A 6 606 108 HOH HOH . E 5 HOH A 7 607 41 HOH HOH . E 5 HOH A 8 608 144 HOH HOH . E 5 HOH A 9 609 14 HOH HOH . E 5 HOH A 10 610 11 HOH HOH . E 5 HOH A 11 611 223 HOH HOH . E 5 HOH A 12 612 65 HOH HOH . E 5 HOH A 13 613 72 HOH HOH . E 5 HOH A 14 614 224 HOH HOH . E 5 HOH A 15 615 146 HOH HOH . E 5 HOH A 16 616 47 HOH HOH . E 5 HOH A 17 617 126 HOH HOH . E 5 HOH A 18 618 190 HOH HOH . E 5 HOH A 19 619 139 HOH HOH . E 5 HOH A 20 620 94 HOH HOH . E 5 HOH A 21 621 23 HOH HOH . E 5 HOH A 22 622 219 HOH HOH . E 5 HOH A 23 623 122 HOH HOH . E 5 HOH A 24 624 45 HOH HOH . E 5 HOH A 25 625 93 HOH HOH . E 5 HOH A 26 626 110 HOH HOH . E 5 HOH A 27 627 149 HOH HOH . E 5 HOH A 28 628 5 HOH HOH . E 5 HOH A 29 629 4 HOH HOH . E 5 HOH A 30 630 26 HOH HOH . E 5 HOH A 31 631 191 HOH HOH . E 5 HOH A 32 632 114 HOH HOH . E 5 HOH A 33 633 7 HOH HOH . E 5 HOH A 34 634 81 HOH HOH . E 5 HOH A 35 635 213 HOH HOH . E 5 HOH A 36 636 137 HOH HOH . E 5 HOH A 37 637 152 HOH HOH . E 5 HOH A 38 638 217 HOH HOH . E 5 HOH A 39 639 59 HOH HOH . E 5 HOH A 40 640 103 HOH HOH . E 5 HOH A 41 641 127 HOH HOH . E 5 HOH A 42 642 106 HOH HOH . E 5 HOH A 43 643 104 HOH HOH . E 5 HOH A 44 644 74 HOH HOH . E 5 HOH A 45 645 192 HOH HOH . E 5 HOH A 46 646 102 HOH HOH . E 5 HOH A 47 647 161 HOH HOH . E 5 HOH A 48 648 92 HOH HOH . E 5 HOH A 49 649 200 HOH HOH . E 5 HOH A 50 650 183 HOH HOH . E 5 HOH A 51 651 84 HOH HOH . E 5 HOH A 52 652 42 HOH HOH . E 5 HOH A 53 653 218 HOH HOH . E 5 HOH A 54 654 170 HOH HOH . E 5 HOH A 55 655 58 HOH HOH . E 5 HOH A 56 656 150 HOH HOH . E 5 HOH A 57 657 222 HOH HOH . E 5 HOH A 58 658 135 HOH HOH . E 5 HOH A 59 659 203 HOH HOH . E 5 HOH A 60 660 118 HOH HOH . E 5 HOH A 61 661 166 HOH HOH . E 5 HOH A 62 662 158 HOH HOH . E 5 HOH A 63 663 99 HOH HOH . E 5 HOH A 64 664 38 HOH HOH . E 5 HOH A 65 665 117 HOH HOH . E 5 HOH A 66 666 10 HOH HOH . E 5 HOH A 67 667 34 HOH HOH . E 5 HOH A 68 668 125 HOH HOH . E 5 HOH A 69 669 105 HOH HOH . E 5 HOH A 70 670 129 HOH HOH . E 5 HOH A 71 671 20 HOH HOH . E 5 HOH A 72 672 173 HOH HOH . E 5 HOH A 73 673 97 HOH HOH . E 5 HOH A 74 674 215 HOH HOH . E 5 HOH A 75 675 123 HOH HOH . E 5 HOH A 76 676 25 HOH HOH . E 5 HOH A 77 677 1 HOH HOH . E 5 HOH A 78 678 78 HOH HOH . E 5 HOH A 79 679 168 HOH HOH . E 5 HOH A 80 680 9 HOH HOH . E 5 HOH A 81 681 163 HOH HOH . E 5 HOH A 82 682 182 HOH HOH . E 5 HOH A 83 683 142 HOH HOH . E 5 HOH A 84 684 35 HOH HOH . E 5 HOH A 85 685 28 HOH HOH . E 5 HOH A 86 686 8 HOH HOH . E 5 HOH A 87 687 115 HOH HOH . E 5 HOH A 88 688 43 HOH HOH . E 5 HOH A 89 689 48 HOH HOH . E 5 HOH A 90 690 138 HOH HOH . E 5 HOH A 91 691 220 HOH HOH . E 5 HOH A 92 692 89 HOH HOH . E 5 HOH A 93 693 151 HOH HOH . E 5 HOH A 94 694 179 HOH HOH . E 5 HOH A 95 695 70 HOH HOH . E 5 HOH A 96 696 18 HOH HOH . E 5 HOH A 97 697 32 HOH HOH . E 5 HOH A 98 698 15 HOH HOH . E 5 HOH A 99 699 33 HOH HOH . E 5 HOH A 100 700 211 HOH HOH . E 5 HOH A 101 701 153 HOH HOH . E 5 HOH A 102 702 87 HOH HOH . E 5 HOH A 103 703 210 HOH HOH . E 5 HOH A 104 704 27 HOH HOH . E 5 HOH A 105 705 55 HOH HOH . E 5 HOH A 106 706 64 HOH HOH . E 5 HOH A 107 707 61 HOH HOH . E 5 HOH A 108 708 56 HOH HOH . E 5 HOH A 109 709 116 HOH HOH . E 5 HOH A 110 710 147 HOH HOH . E 5 HOH A 111 711 13 HOH HOH . E 5 HOH A 112 712 178 HOH HOH . E 5 HOH A 113 713 159 HOH HOH . E 5 HOH A 114 714 134 HOH HOH . E 5 HOH A 115 715 3 HOH HOH . E 5 HOH A 116 716 167 HOH HOH . E 5 HOH A 117 717 24 HOH HOH . E 5 HOH A 118 718 67 HOH HOH . E 5 HOH A 119 719 133 HOH HOH . E 5 HOH A 120 720 85 HOH HOH . E 5 HOH A 121 721 19 HOH HOH . E 5 HOH A 122 722 50 HOH HOH . E 5 HOH A 123 723 205 HOH HOH . E 5 HOH A 124 724 221 HOH HOH . E 5 HOH A 125 725 112 HOH HOH . E 5 HOH A 126 726 174 HOH HOH . E 5 HOH A 127 727 157 HOH HOH . E 5 HOH A 128 728 62 HOH HOH . E 5 HOH A 129 729 109 HOH HOH . E 5 HOH A 130 730 37 HOH HOH . E 5 HOH A 131 731 60 HOH HOH . E 5 HOH A 132 732 155 HOH HOH . E 5 HOH A 133 733 22 HOH HOH . E 5 HOH A 134 734 96 HOH HOH . E 5 HOH A 135 735 185 HOH HOH . E 5 HOH A 136 736 212 HOH HOH . E 5 HOH A 137 737 208 HOH HOH . E 5 HOH A 138 738 130 HOH HOH . E 5 HOH A 139 739 107 HOH HOH . E 5 HOH A 140 740 198 HOH HOH . E 5 HOH A 141 741 180 HOH HOH . E 5 HOH A 142 742 195 HOH HOH . E 5 HOH A 143 743 181 HOH HOH . E 5 HOH A 144 744 188 HOH HOH . E 5 HOH A 145 745 30 HOH HOH . E 5 HOH A 146 746 73 HOH HOH . E 5 HOH A 147 747 207 HOH HOH . E 5 HOH A 148 748 169 HOH HOH . E 5 HOH A 149 749 171 HOH HOH . E 5 HOH A 150 750 186 HOH HOH . E 5 HOH A 151 751 83 HOH HOH . E 5 HOH A 152 752 86 HOH HOH . E 5 HOH A 153 753 69 HOH HOH . E 5 HOH A 154 754 214 HOH HOH . E 5 HOH A 155 755 172 HOH HOH . E 5 HOH A 156 756 39 HOH HOH . E 5 HOH A 157 757 91 HOH HOH . E 5 HOH A 158 758 202 HOH HOH . E 5 HOH A 159 759 77 HOH HOH . E 5 HOH A 160 760 216 HOH HOH . E 5 HOH A 161 761 156 HOH HOH . E 5 HOH A 162 762 194 HOH HOH . E 5 HOH A 163 763 199 HOH HOH . E 5 HOH A 164 764 63 HOH HOH . E 5 HOH A 165 765 164 HOH HOH . E 5 HOH A 166 766 143 HOH HOH . E 5 HOH A 167 767 80 HOH HOH . E 5 HOH A 168 768 75 HOH HOH . E 5 HOH A 169 769 204 HOH HOH . E 5 HOH A 170 770 206 HOH HOH . E 5 HOH A 171 771 148 HOH HOH . F 5 HOH L 1 201 12 HOH HOH . F 5 HOH L 2 202 162 HOH HOH . F 5 HOH L 3 203 225 HOH HOH . F 5 HOH L 4 204 16 HOH HOH . F 5 HOH L 5 205 113 HOH HOH . F 5 HOH L 6 206 66 HOH HOH . F 5 HOH L 7 207 90 HOH HOH . F 5 HOH L 8 208 79 HOH HOH . F 5 HOH L 9 209 111 HOH HOH . F 5 HOH L 10 210 2 HOH HOH . F 5 HOH L 11 211 21 HOH HOH . F 5 HOH L 12 212 124 HOH HOH . F 5 HOH L 13 213 95 HOH HOH . F 5 HOH L 14 214 136 HOH HOH . F 5 HOH L 15 215 176 HOH HOH . F 5 HOH L 16 216 52 HOH HOH . F 5 HOH L 17 217 88 HOH HOH . F 5 HOH L 18 218 165 HOH HOH . F 5 HOH L 19 219 53 HOH HOH . F 5 HOH L 20 220 82 HOH HOH . F 5 HOH L 21 221 197 HOH HOH . F 5 HOH L 22 222 184 HOH HOH . F 5 HOH L 23 223 71 HOH HOH . F 5 HOH L 24 224 101 HOH HOH . F 5 HOH L 25 225 17 HOH HOH . F 5 HOH L 26 226 29 HOH HOH . F 5 HOH L 27 227 196 HOH HOH . F 5 HOH L 28 228 68 HOH HOH . F 5 HOH L 29 229 57 HOH HOH . F 5 HOH L 30 230 98 HOH HOH . F 5 HOH L 31 231 76 HOH HOH . F 5 HOH L 32 232 175 HOH HOH . F 5 HOH L 33 233 120 HOH HOH . F 5 HOH L 34 234 54 HOH HOH . F 5 HOH L 35 235 36 HOH HOH . F 5 HOH L 36 236 121 HOH HOH . F 5 HOH L 37 237 131 HOH HOH . F 5 HOH L 38 238 49 HOH HOH . F 5 HOH L 39 239 160 HOH HOH . F 5 HOH L 40 240 31 HOH HOH . F 5 HOH L 41 241 128 HOH HOH . F 5 HOH L 42 242 187 HOH HOH . F 5 HOH L 43 243 209 HOH HOH . F 5 HOH L 44 244 154 HOH HOH . F 5 HOH L 45 245 189 HOH HOH . F 5 HOH L 46 246 119 HOH HOH . F 5 HOH L 47 247 177 HOH HOH . F 5 HOH L 48 248 145 HOH HOH . F 5 HOH L 49 249 193 HOH HOH . F 5 HOH L 50 250 100 HOH HOH . F 5 HOH L 51 251 140 HOH HOH . F 5 HOH L 52 252 44 HOH HOH . F 5 HOH L 53 253 201 HOH HOH . F 5 HOH L 54 254 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 4 -9.363 -8.095 29.708 1 33.61 ? P PO4 502 A 1 HETATM 2 O O1 PO4 . . . D 4 -10.233 -7.357 28.718 1 34.13 ? O1 PO4 502 A 1 HETATM 3 O O2 PO4 . . . D 4 -8.356 -7.129 30.285 1 34.08 ? O2 PO4 502 A 1 HETATM 4 O O3 PO4 . . . D 4 -8.636 -9.215 29.007 1 33.35 ? O3 PO4 502 A 1 HETATM 5 O O4 PO4 . . . D 4 -10.217 -8.662 30.819 1 34.16 ? O4 PO4 502 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #