data_6GEW # _model_server_result.job_id Y2j7DRvo9i8TIkDHUpxTSw _model_server_result.datetime_utc '2025-03-09 05:41:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gew # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6GEW # _exptl.entry_id 6GEW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GEW _cell.length_a 89.784 _cell.length_b 89.784 _cell.length_c 156.902 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GEW _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 52.300667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TRP 399 A TRP 400 1_555 A N MVA 400 A MVA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale2 A C MVA 400 A MVA 401 1_555 A N ILE 401 A ILE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 298 n n N HN1 SAH sing 299 n n N HN2 SAH sing 300 n n CA CB SAH sing 301 n n CA C SAH sing 302 n n CA HA SAH sing 303 n n CB CG SAH sing 304 n n CB HB1 SAH sing 305 n n CB HB2 SAH sing 306 n n CG SD SAH sing 307 n n CG HG1 SAH sing 308 n n CG HG2 SAH sing 309 n n SD C5' SAH sing 310 n n C O SAH doub 311 n n C OXT SAH sing 312 n n OXT HXT SAH sing 313 n n C5' C4' SAH sing 314 n n C5' "H5'1" SAH sing 315 n n C5' "H5'2" SAH sing 316 n n C4' O4' SAH sing 317 n n C4' C3' SAH sing 318 n n C4' H4' SAH sing 319 n n O4' C1' SAH sing 320 n n C3' O3' SAH sing 321 n n C3' C2' SAH sing 322 n n C3' H3' SAH sing 323 n n O3' HO3' SAH sing 324 n n C2' O2' SAH sing 325 n n C2' C1' SAH sing 326 n n C2' H2' SAH sing 327 n n O2' HO2' SAH sing 328 n n C1' N9 SAH sing 329 n n C1' H1' SAH sing 330 n n N9 C8 SAH sing 331 n y N9 C4 SAH sing 332 n y C8 N7 SAH doub 333 n y C8 H8 SAH sing 334 n n N7 C5 SAH sing 335 n y C5 C6 SAH sing 336 n y C5 C4 SAH doub 337 n y C6 N6 SAH sing 338 n n C6 N1 SAH doub 339 n y N6 HN61 SAH sing 340 n n N6 HN62 SAH sing 341 n n N1 C2 SAH sing 342 n y C2 N3 SAH doub 343 n y C2 H2 SAH sing 344 n n N3 C4 SAH sing 345 n y # _atom_sites.entry_id 6GEW _atom_sites.fract_transf_matrix[1][1] 0.011138 _atom_sites.fract_transf_matrix[1][2] 0.00643 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006373 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 501 501 SAH SAH . C 3 SFG A 1 502 502 SFG SFG . D 4 HOH A 1 601 8 HOH HOH . D 4 HOH A 2 602 5 HOH HOH . D 4 HOH A 3 603 6 HOH HOH . D 4 HOH A 4 604 13 HOH HOH . D 4 HOH A 5 605 18 HOH HOH . D 4 HOH A 6 606 16 HOH HOH . D 4 HOH A 7 607 10 HOH HOH . D 4 HOH A 8 608 3 HOH HOH . D 4 HOH A 9 609 14 HOH HOH . D 4 HOH A 10 610 1 HOH HOH . D 4 HOH A 11 611 9 HOH HOH . D 4 HOH A 12 612 15 HOH HOH . D 4 HOH A 13 613 7 HOH HOH . D 4 HOH A 14 614 19 HOH HOH . D 4 HOH A 15 615 2 HOH HOH . D 4 HOH A 16 616 12 HOH HOH . D 4 HOH A 17 617 17 HOH HOH . D 4 HOH A 18 618 4 HOH HOH . D 4 HOH A 19 619 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . A . B 2 41.908 -0.91 16.416 0.3 56.37 ? N SAH 501 A 1 HETATM 2 C CA SAH . A . B 2 41.762 0.577 16.401 0.3 56.53 ? CA SAH 501 A 1 HETATM 3 C CB SAH . A . B 2 40.425 0.989 15.78 0.3 57.72 ? CB SAH 501 A 1 HETATM 4 C CG SAH . A . B 2 40.325 0.557 14.316 0.3 58.5 ? CG SAH 501 A 1 HETATM 5 S SD SAH . A . B 2 38.716 0.903 13.668 0.3 60.14 ? SD SAH 501 A 1 HETATM 6 C C SAH . A . B 2 41.864 1.088 17.814 0.3 56.45 ? C SAH 501 A 1 HETATM 7 O O SAH . A . B 2 41.681 2.278 18.074 0.3 56.61 ? O SAH 501 A 1 HETATM 8 O OXT SAH . A . B 2 42.144 0.329 18.749 0.3 55.71 ? OXT SAH 501 A 1 HETATM 9 C C5' SAH . A . B 2 38.948 2.462 12.89 0.3 60.27 ? C5' SAH 501 A 1 HETATM 10 C C4' SAH . A . B 2 38.061 3.458 13.616 0.3 61.11 ? C4' SAH 501 A 1 HETATM 11 O O4' SAH . A . B 2 38.592 3.697 14.919 0.3 60.41 ? O4' SAH 501 A 1 HETATM 12 C C3' SAH . A . B 2 37.998 4.82 12.952 0.3 61.86 ? C3' SAH 501 A 1 HETATM 13 O O3' SAH . A . B 2 36.993 4.914 11.941 0.3 63.59 ? O3' SAH 501 A 1 HETATM 14 C C2' SAH . A . B 2 37.693 5.734 14.112 0.3 62.28 ? C2' SAH 501 A 1 HETATM 15 O O2' SAH . A . B 2 36.28 5.799 14.324 0.3 63.69 ? O2' SAH 501 A 1 HETATM 16 C C1' SAH . A . B 2 38.427 5.07 15.262 0.3 60.77 ? C1' SAH 501 A 1 HETATM 17 N N9 SAH . A . B 2 39.736 5.746 15.361 0.3 59.83 ? N9 SAH 501 A 1 HETATM 18 C C8 SAH . A . B 2 40.912 5.321 14.836 0.3 58.79 ? C8 SAH 501 A 1 HETATM 19 N N7 SAH . A . B 2 41.897 6.218 15.112 0.3 58.63 ? N7 SAH 501 A 1 HETATM 20 C C5 SAH . A . B 2 41.344 7.231 15.824 0.3 59.43 ? C5 SAH 501 A 1 HETATM 21 C C6 SAH . A . B 2 41.803 8.496 16.437 0.3 60.1 ? C6 SAH 501 A 1 HETATM 22 N N6 SAH . A . B 2 43.102 8.869 16.347 0.3 60.13 ? N6 SAH 501 A 1 HETATM 23 N N1 SAH . A . B 2 40.89 9.265 17.091 0.3 61.02 ? N1 SAH 501 A 1 HETATM 24 C C2 SAH . A . B 2 39.595 8.913 17.192 0.3 61.43 ? C2 SAH 501 A 1 HETATM 25 N N3 SAH . A . B 2 39.113 7.777 16.667 0.3 61.09 ? N3 SAH 501 A 1 HETATM 26 C C4 SAH . A . B 2 39.919 6.917 15.982 0.3 60.23 ? C4 SAH 501 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #