data_6GEW # _model_server_result.job_id 1yq_eUzptQoI7jmWWu3j0g _model_server_result.datetime_utc '2025-03-09 06:07:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gew # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6GEW # _exptl.entry_id 6GEW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.387 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SINEFUNGIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GEW _cell.length_a 89.784 _cell.length_b 89.784 _cell.length_c 156.902 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GEW _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 52.300667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TRP 399 A TRP 400 1_555 A N MVA 400 A MVA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale2 A C MVA 400 A MVA 401 1_555 A N ILE 401 A ILE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C15 H23 N7 O5' _chem_comp.formula_weight 381.387 _chem_comp.id SFG _chem_comp.mon_nstd_flag . _chem_comp.name SINEFUNGIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ADENOSYL-ORNITHINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SFG sing 359 n n N HN1 SFG sing 360 n n N HN2 SFG sing 361 n n CA C SFG sing 362 n n CA CB SFG sing 363 n n CA HA SFG sing 364 n n C O SFG doub 365 n n C OXT SFG sing 366 n n OXT HXT SFG sing 367 n n CB CG SFG sing 368 n n CB HB1 SFG sing 369 n n CB HB2 SFG sing 370 n n CG CD SFG sing 371 n n CG HG1 SFG sing 372 n n CG HG2 SFG sing 373 n n CD NE SFG sing 374 n n CD C5' SFG sing 375 n n CD HD SFG sing 376 n n NE HNE1 SFG sing 377 n n NE HNE2 SFG sing 378 n n C5' C4' SFG sing 379 n n C5' "H5'1" SFG sing 380 n n C5' "H5'2" SFG sing 381 n n C4' O4' SFG sing 382 n n C4' C3' SFG sing 383 n n C4' H4' SFG sing 384 n n O4' C1' SFG sing 385 n n C3' O3' SFG sing 386 n n C3' C2' SFG sing 387 n n C3' H3' SFG sing 388 n n O3' HO3' SFG sing 389 n n C2' O2' SFG sing 390 n n C2' C1' SFG sing 391 n n C2' H2' SFG sing 392 n n O2' HO2' SFG sing 393 n n C1' N9 SFG sing 394 n n C1' H1' SFG sing 395 n n N9 C8 SFG sing 396 n y N9 C4 SFG sing 397 n y C8 N7 SFG doub 398 n y C8 H8 SFG sing 399 n n N7 C5 SFG sing 400 n y C5 C6 SFG sing 401 n y C5 C4 SFG doub 402 n y C6 N6 SFG sing 403 n n C6 N1 SFG doub 404 n y N6 HN61 SFG sing 405 n n N6 HN62 SFG sing 406 n n N1 C2 SFG sing 407 n y C2 N3 SFG doub 408 n y C2 H2 SFG sing 409 n n N3 C4 SFG sing 410 n y # _atom_sites.entry_id 6GEW _atom_sites.fract_transf_matrix[1][1] 0.011138 _atom_sites.fract_transf_matrix[1][2] 0.00643 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006373 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 501 501 SAH SAH . C 3 SFG A 1 502 502 SFG SFG . D 4 HOH A 1 601 8 HOH HOH . D 4 HOH A 2 602 5 HOH HOH . D 4 HOH A 3 603 6 HOH HOH . D 4 HOH A 4 604 13 HOH HOH . D 4 HOH A 5 605 18 HOH HOH . D 4 HOH A 6 606 16 HOH HOH . D 4 HOH A 7 607 10 HOH HOH . D 4 HOH A 8 608 3 HOH HOH . D 4 HOH A 9 609 14 HOH HOH . D 4 HOH A 10 610 1 HOH HOH . D 4 HOH A 11 611 9 HOH HOH . D 4 HOH A 12 612 15 HOH HOH . D 4 HOH A 13 613 7 HOH HOH . D 4 HOH A 14 614 19 HOH HOH . D 4 HOH A 15 615 2 HOH HOH . D 4 HOH A 16 616 12 HOH HOH . D 4 HOH A 17 617 17 HOH HOH . D 4 HOH A 18 618 4 HOH HOH . D 4 HOH A 19 619 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SFG . B . C 3 41.675 -0.913 16.446 0.7 52.73 ? N SFG 502 A 1 HETATM 2 C CA SFG . B . C 3 41.434 0.523 16.469 0.7 53.23 ? CA SFG 502 A 1 HETATM 3 C C SFG . B . C 3 41.41 0.983 17.918 0.7 53.32 ? C SFG 502 A 1 HETATM 4 O O SFG . B . C 3 40.792 2.039 18.198 0.7 54.09 ? O SFG 502 A 1 HETATM 5 O OXT SFG . B . C 3 42.027 0.319 18.798 0.7 52.02 ? OXT SFG 502 A 1 HETATM 6 C CB SFG . B . C 3 40.136 0.907 15.737 0.7 54.63 ? CB SFG 502 A 1 HETATM 7 C CG SFG . B . C 3 40.151 0.557 14.236 0.7 55.75 ? CG SFG 502 A 1 HETATM 8 C CD SFG . B . C 3 38.884 1.015 13.481 0.7 57.1 ? CD SFG 502 A 1 HETATM 9 N NE SFG . B . C 3 38.626 0.132 12.354 0.7 57.83 ? NE SFG 502 A 1 HETATM 10 C C5' SFG . B . C 3 38.985 2.44 12.934 0.7 57.37 ? C5' SFG 502 A 1 HETATM 11 C C4' SFG . B . C 3 38.148 3.402 13.767 0.7 58.17 ? C4' SFG 502 A 1 HETATM 12 O O4' SFG . B . C 3 38.819 3.625 15.006 0.7 57.36 ? O4' SFG 502 A 1 HETATM 13 C C3' SFG . B . C 3 37.989 4.792 13.185 0.7 59.06 ? C3' SFG 502 A 1 HETATM 14 O O3' SFG . B . C 3 36.885 4.919 12.302 0.7 61.11 ? O3' SFG 502 A 1 HETATM 15 C C2' SFG . B . C 3 37.728 5.616 14.412 0.7 59.38 ? C2' SFG 502 A 1 HETATM 16 O O2' SFG . B . C 3 36.351 5.484 14.773 0.7 61 ? O2' SFG 502 A 1 HETATM 17 C C1' SFG . B . C 3 38.636 4.967 15.43 0.7 57.48 ? C1' SFG 502 A 1 HETATM 18 N N9 SFG . B . C 3 39.917 5.689 15.395 0.7 56.37 ? N9 SFG 502 A 1 HETATM 19 C C8 SFG . B . C 3 41.054 5.319 14.759 0.7 55.28 ? C8 SFG 502 A 1 HETATM 20 N N7 SFG . B . C 3 42.019 6.26 14.946 0.7 55.04 ? N7 SFG 502 A 1 HETATM 21 C C5 SFG . B . C 3 41.485 7.235 15.72 0.7 55.79 ? C5 SFG 502 A 1 HETATM 22 C C6 SFG . B . C 3 41.926 8.512 16.301 0.7 56.58 ? C6 SFG 502 A 1 HETATM 23 N N6 SFG . B . C 3 43.19 8.935 16.083 0.7 57 ? N6 SFG 502 A 1 HETATM 24 N N1 SFG . B . C 3 41.048 9.238 17.051 0.7 57.27 ? N1 SFG 502 A 1 HETATM 25 C C2 SFG . B . C 3 39.784 8.839 17.275 0.7 57.42 ? C2 SFG 502 A 1 HETATM 26 N N3 SFG . B . C 3 39.32 7.672 16.8 0.7 56.98 ? N3 SFG 502 A 1 HETATM 27 C C4 SFG . B . C 3 40.101 6.859 16.022 0.7 56.62 ? C4 SFG 502 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #