data_6GF3
#
_model_server_result.job_id            Ga3e00N2cy0UKraxtx4ppg 
_model_server_result.datetime_utc      '2025-01-10 13:12:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gf3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":503}' 
#
_entry.id    6GF3 
#
_exptl.entry_id    6GF3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6GF3 
_cell.length_a            104.72 
_cell.length_b            158.15 
_cell.length_c            180.95 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GF3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 I N N 
? 8 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? 
metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? 
metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc8 G O3G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc10 H MG MG . A MG 502 1_555 V O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc11 H MG MG . A MG 502 1_555 V O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc12 H MG MG . A MG 502 1_555 V O HOH . A HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc13 H MG MG . A MG 502 1_555 V O HOH . A HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc14 J O1A GDP . B GDP 501 1_555 M MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc15 M MG MG . B MG 504 1_555 W O HOH . B HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc16 M MG MG . B MG 504 1_555 W O HOH . B HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc17 M MG MG . B MG 504 1_555 W O HOH . B HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc18 M MG MG . B MG 504 1_555 X O HOH . C HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc19 C OD1 ASP 39 C ASP 39 1_555 P CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc20 C OD2 ASP 39 C ASP 39 1_555 P CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc21 C O THR 41 C THR 41 1_555 P CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? 
metalc ? metalc22 C OG1 THR 41 C THR 41 1_555 P CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc23 C O GLY 44 C GLY 44 1_555 P CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc24 C OE1 GLU 55 C GLU 55 1_555 P CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? 
metalc ? metalc25 C OE2 GLU 55 C GLU 55 1_555 P CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc26 N O1G GTP . C GTP 501 1_555 O MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc27 N O1B GTP . C GTP 501 1_555 O MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc28 O MG MG . C MG 502 1_555 X O HOH . C HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc29 O MG MG . C MG 502 1_555 X O HOH . C HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc30 O MG MG . C MG 502 1_555 X O HOH . C HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc31 D OE1 GLN 11 D GLN 11 1_555 S MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc32 D OD2 ASP 177 D ASP 179 1_555 S MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc33 R O1A GDP . D GDP 501 1_555 S MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6GF3 
_atom_sites.fract_transf_matrix[1][1]    0.009549 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006323 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005526 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 6 GTP A 1 501 501 GTP GTP . 
H 7 MG A 1 502 502 MG MG . 
I 8 CA A 1 503 1 CA CA . 
J 9 GDP B 1 501 501 GDP GDP . 
K 10 MES B 1 502 503 MES MES . 
L 11 EX5 B 1 503 1 EX5 DRG . 
M 7 MG B 1 504 1 MG MG . 
N 6 GTP C 1 501 501 GTP GTP . 
O 7 MG C 1 502 502 MG MG . 
P 8 CA C 1 503 2 CA CA . 
Q 12 EDO C 1 504 1 EDO EDO . 
R 9 GDP D 1 501 501 GDP GDP . 
S 7 MG D 1 502 2 MG MG . 
T 10 MES D 1 503 1 MES MES . 
U 13 ACP F 1 401 401 ACP ACP . 
V 14 HOH A 1 601 132 HOH HOH . 
V 14 HOH A 2 602 119 HOH HOH . 
V 14 HOH A 3 603 47 HOH HOH . 
V 14 HOH A 4 604 63 HOH HOH . 
V 14 HOH A 5 605 23 HOH HOH . 
V 14 HOH A 6 606 149 HOH HOH . 
V 14 HOH A 7 607 125 HOH HOH . 
V 14 HOH A 8 608 120 HOH HOH . 
V 14 HOH A 9 609 19 HOH HOH . 
V 14 HOH A 10 610 142 HOH HOH . 
V 14 HOH A 11 611 24 HOH HOH . 
V 14 HOH A 12 612 87 HOH HOH . 
V 14 HOH A 13 613 98 HOH HOH . 
V 14 HOH A 14 614 39 HOH HOH . 
V 14 HOH A 15 615 118 HOH HOH . 
V 14 HOH A 16 616 67 HOH HOH . 
V 14 HOH A 17 617 123 HOH HOH . 
V 14 HOH A 18 618 130 HOH HOH . 
V 14 HOH A 19 619 85 HOH HOH . 
V 14 HOH A 20 620 151 HOH HOH . 
V 14 HOH A 21 621 37 HOH HOH . 
V 14 HOH A 22 622 31 HOH HOH . 
V 14 HOH A 23 623 152 HOH HOH . 
V 14 HOH A 24 624 117 HOH HOH . 
V 14 HOH A 25 625 150 HOH HOH . 
V 14 HOH A 26 626 143 HOH HOH . 
V 14 HOH A 27 627 45 HOH HOH . 
V 14 HOH A 28 628 135 HOH HOH . 
V 14 HOH A 29 629 136 HOH HOH . 
V 14 HOH A 30 630 153 HOH HOH . 
W 14 HOH B 1 601 32 HOH HOH . 
W 14 HOH B 2 602 73 HOH HOH . 
W 14 HOH B 3 603 155 HOH HOH . 
W 14 HOH B 4 604 30 HOH HOH . 
W 14 HOH B 5 605 95 HOH HOH . 
W 14 HOH B 6 606 102 HOH HOH . 
W 14 HOH B 7 607 112 HOH HOH . 
W 14 HOH B 8 608 58 HOH HOH . 
W 14 HOH B 9 609 5 HOH HOH . 
W 14 HOH B 10 610 46 HOH HOH . 
W 14 HOH B 11 611 79 HOH HOH . 
W 14 HOH B 12 612 13 HOH HOH . 
W 14 HOH B 13 613 55 HOH HOH . 
W 14 HOH B 14 614 93 HOH HOH . 
W 14 HOH B 15 615 40 HOH HOH . 
W 14 HOH B 16 616 10 HOH HOH . 
W 14 HOH B 17 617 111 HOH HOH . 
W 14 HOH B 18 618 60 HOH HOH . 
W 14 HOH B 19 619 154 HOH HOH . 
W 14 HOH B 20 620 97 HOH HOH . 
W 14 HOH B 21 621 38 HOH HOH . 
W 14 HOH B 22 622 145 HOH HOH . 
W 14 HOH B 23 623 16 HOH HOH . 
W 14 HOH B 24 624 84 HOH HOH . 
W 14 HOH B 25 625 41 HOH HOH . 
W 14 HOH B 26 626 18 HOH HOH . 
W 14 HOH B 27 627 70 HOH HOH . 
W 14 HOH B 28 628 140 HOH HOH . 
W 14 HOH B 29 629 131 HOH HOH . 
W 14 HOH B 30 630 156 HOH HOH . 
X 14 HOH C 1 601 22 HOH HOH . 
X 14 HOH C 2 602 9 HOH HOH . 
X 14 HOH C 3 603 7 HOH HOH . 
X 14 HOH C 4 604 107 HOH HOH . 
X 14 HOH C 5 605 101 HOH HOH . 
X 14 HOH C 6 606 62 HOH HOH . 
X 14 HOH C 7 607 105 HOH HOH . 
X 14 HOH C 8 608 6 HOH HOH . 
X 14 HOH C 9 609 129 HOH HOH . 
X 14 HOH C 10 610 61 HOH HOH . 
X 14 HOH C 11 611 36 HOH HOH . 
X 14 HOH C 12 612 14 HOH HOH . 
X 14 HOH C 13 613 25 HOH HOH . 
X 14 HOH C 14 614 77 HOH HOH . 
X 14 HOH C 15 615 114 HOH HOH . 
X 14 HOH C 16 616 28 HOH HOH . 
X 14 HOH C 17 617 11 HOH HOH . 
X 14 HOH C 18 618 2 HOH HOH . 
X 14 HOH C 19 619 4 HOH HOH . 
X 14 HOH C 20 620 89 HOH HOH . 
X 14 HOH C 21 621 106 HOH HOH . 
X 14 HOH C 22 622 44 HOH HOH . 
X 14 HOH C 23 623 49 HOH HOH . 
X 14 HOH C 24 624 8 HOH HOH . 
X 14 HOH C 25 625 96 HOH HOH . 
X 14 HOH C 26 626 68 HOH HOH . 
X 14 HOH C 27 627 42 HOH HOH . 
X 14 HOH C 28 628 54 HOH HOH . 
X 14 HOH C 29 629 65 HOH HOH . 
X 14 HOH C 30 630 27 HOH HOH . 
X 14 HOH C 31 631 146 HOH HOH . 
X 14 HOH C 32 632 56 HOH HOH . 
X 14 HOH C 33 633 34 HOH HOH . 
X 14 HOH C 34 634 52 HOH HOH . 
X 14 HOH C 35 635 99 HOH HOH . 
X 14 HOH C 36 636 121 HOH HOH . 
X 14 HOH C 37 637 26 HOH HOH . 
X 14 HOH C 38 638 113 HOH HOH . 
X 14 HOH C 39 639 59 HOH HOH . 
X 14 HOH C 40 640 71 HOH HOH . 
X 14 HOH C 41 641 66 HOH HOH . 
X 14 HOH C 42 642 3 HOH HOH . 
X 14 HOH C 43 643 43 HOH HOH . 
X 14 HOH C 44 644 15 HOH HOH . 
X 14 HOH C 45 645 69 HOH HOH . 
X 14 HOH C 46 646 33 HOH HOH . 
X 14 HOH C 47 647 94 HOH HOH . 
X 14 HOH C 48 648 29 HOH HOH . 
X 14 HOH C 49 649 12 HOH HOH . 
X 14 HOH C 50 650 21 HOH HOH . 
X 14 HOH C 51 651 20 HOH HOH . 
X 14 HOH C 52 652 64 HOH HOH . 
X 14 HOH C 53 653 72 HOH HOH . 
X 14 HOH C 54 654 78 HOH HOH . 
X 14 HOH C 55 655 76 HOH HOH . 
X 14 HOH C 56 656 148 HOH HOH . 
X 14 HOH C 57 657 116 HOH HOH . 
X 14 HOH C 58 658 50 HOH HOH . 
X 14 HOH C 59 659 90 HOH HOH . 
X 14 HOH C 60 660 122 HOH HOH . 
X 14 HOH C 61 661 51 HOH HOH . 
X 14 HOH C 62 662 124 HOH HOH . 
X 14 HOH C 63 663 133 HOH HOH . 
Y 14 HOH D 1 601 127 HOH HOH . 
Y 14 HOH D 2 602 100 HOH HOH . 
Y 14 HOH D 3 603 17 HOH HOH . 
Y 14 HOH D 4 604 147 HOH HOH . 
Y 14 HOH D 5 605 82 HOH HOH . 
Y 14 HOH D 6 606 115 HOH HOH . 
Y 14 HOH D 7 607 126 HOH HOH . 
Y 14 HOH D 8 608 128 HOH HOH . 
Y 14 HOH D 9 609 134 HOH HOH . 
Z 14 HOH E 1 201 57 HOH HOH . 
Z 14 HOH E 2 202 35 HOH HOH . 
Z 14 HOH E 3 203 48 HOH HOH . 
Z 14 HOH E 4 204 88 HOH HOH . 
Z 14 HOH E 5 205 80 HOH HOH . 
Z 14 HOH E 6 206 144 HOH HOH . 
Z 14 HOH E 7 207 81 HOH HOH . 
Z 14 HOH E 8 208 75 HOH HOH . 
AA 14 HOH F 1 501 92 HOH HOH . 
AA 14 HOH F 2 502 91 HOH HOH . 
AA 14 HOH F 3 503 86 HOH HOH . 
AA 14 HOH F 4 504 53 HOH HOH . 
AA 14 HOH F 5 505 83 HOH HOH . 
AA 14 HOH F 6 506 139 HOH HOH . 
AA 14 HOH F 7 507 137 HOH HOH . 
AA 14 HOH F 8 508 109 HOH HOH . 
AA 14 HOH F 9 509 108 HOH HOH . 
AA 14 HOH F 10 510 138 HOH HOH . 
AA 14 HOH F 11 511 74 HOH HOH . 
AA 14 HOH F 12 512 141 HOH HOH . 
AA 14 HOH F 13 513 110 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         P 
_atom_site.label_entity_id       8 
_atom_site.Cartn_x               13.807 
_atom_site.Cartn_y               55.541 
_atom_site.Cartn_z               -11.227 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        81.91 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           503 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#