data_6GF6
#
_model_server_result.job_id            G6a6Ijit--0gnCfX5hQylA 
_model_server_result.datetime_utc      '2024-12-21 13:26:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gf6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":901}' 
#
_entry.id    6GF6 
#
_exptl.entry_id    6GF6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6GF6 
_cell.length_a            75.98 
_cell.length_b            75.98 
_cell.length_c            101.88 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GF6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 14 A CYS 32 1_555 A SG CYS 106 A CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf2 A SG CYS 48 A CYS 66 1_555 B SG CYS 48 B CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 A SG CYS 51 A CYS 69 1_555 A SG CYS 72 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf4 B SG CYS 14 B CYS 32 1_555 B SG CYS 106 B CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 B SG CYS 51 B CYS 69 1_555 B SG CYS 72 B CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 47 A ASN 65 1_555 C C1 NAG . A NAG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? 
covale ? covale2 B ND2 ASN 47 B ASN 65 1_555 E C1 NAG . B NAG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6GF6 
_atom_sites.fract_transf_matrix[1][1]    0.013161 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013161 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009815 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 900 900 NAG NAG . 
D 3 GOL A 1 901 901 GOL GOL . 
E 2 NAG B 1 900 900 NAG NAG . 
F 4 HOH A 1 1001 25 HOH HOH . 
F 4 HOH A 2 1002 38 HOH HOH . 
F 4 HOH A 3 1003 19 HOH HOH . 
F 4 HOH A 4 1004 4 HOH HOH . 
F 4 HOH A 5 1005 3 HOH HOH . 
F 4 HOH A 6 1006 2 HOH HOH . 
F 4 HOH A 7 1007 17 HOH HOH . 
F 4 HOH A 8 1008 24 HOH HOH . 
F 4 HOH A 9 1009 30 HOH HOH . 
F 4 HOH A 10 1010 58 HOH HOH . 
F 4 HOH A 11 1011 40 HOH HOH . 
F 4 HOH A 12 1012 26 HOH HOH . 
F 4 HOH A 13 1013 20 HOH HOH . 
F 4 HOH A 14 1014 48 HOH HOH . 
F 4 HOH A 15 1015 44 HOH HOH . 
F 4 HOH A 16 1016 10 HOH HOH . 
F 4 HOH A 17 1017 69 HOH HOH . 
F 4 HOH A 18 1018 28 HOH HOH . 
F 4 HOH A 19 1019 23 HOH HOH . 
F 4 HOH A 20 1020 76 HOH HOH . 
F 4 HOH A 21 1021 87 HOH HOH . 
F 4 HOH A 22 1022 79 HOH HOH . 
F 4 HOH A 23 1023 47 HOH HOH . 
F 4 HOH A 24 1024 42 HOH HOH . 
F 4 HOH A 25 1025 34 HOH HOH . 
F 4 HOH A 26 1026 64 HOH HOH . 
F 4 HOH A 27 1027 27 HOH HOH . 
F 4 HOH A 28 1028 32 HOH HOH . 
F 4 HOH A 29 1029 14 HOH HOH . 
F 4 HOH A 30 1030 9 HOH HOH . 
F 4 HOH A 31 1031 22 HOH HOH . 
F 4 HOH A 32 1032 62 HOH HOH . 
F 4 HOH A 33 1033 12 HOH HOH . 
F 4 HOH A 34 1034 55 HOH HOH . 
F 4 HOH A 35 1035 15 HOH HOH . 
F 4 HOH A 36 1036 37 HOH HOH . 
F 4 HOH A 37 1037 61 HOH HOH . 
F 4 HOH A 38 1038 54 HOH HOH . 
F 4 HOH A 39 1039 71 HOH HOH . 
F 4 HOH A 40 1040 33 HOH HOH . 
F 4 HOH A 41 1041 11 HOH HOH . 
F 4 HOH A 42 1042 70 HOH HOH . 
F 4 HOH A 43 1043 67 HOH HOH . 
F 4 HOH A 44 1044 66 HOH HOH . 
F 4 HOH A 45 1045 52 HOH HOH . 
F 4 HOH A 46 1046 1 HOH HOH . 
F 4 HOH A 47 1047 46 HOH HOH . 
F 4 HOH A 48 1048 49 HOH HOH . 
F 4 HOH A 49 1049 45 HOH HOH . 
F 4 HOH A 50 1050 65 HOH HOH . 
F 4 HOH A 51 1051 88 HOH HOH . 
F 4 HOH A 52 1052 81 HOH HOH . 
F 4 HOH A 53 1053 80 HOH HOH . 
F 4 HOH A 54 1054 29 HOH HOH . 
G 4 HOH B 1 1001 36 HOH HOH . 
G 4 HOH B 2 1002 63 HOH HOH . 
G 4 HOH B 3 1003 50 HOH HOH . 
G 4 HOH B 4 1004 21 HOH HOH . 
G 4 HOH B 5 1005 8 HOH HOH . 
G 4 HOH B 6 1006 82 HOH HOH . 
G 4 HOH B 7 1007 68 HOH HOH . 
G 4 HOH B 8 1008 7 HOH HOH . 
G 4 HOH B 9 1009 31 HOH HOH . 
G 4 HOH B 10 1010 35 HOH HOH . 
G 4 HOH B 11 1011 41 HOH HOH . 
G 4 HOH B 12 1012 53 HOH HOH . 
G 4 HOH B 13 1013 6 HOH HOH . 
G 4 HOH B 14 1014 75 HOH HOH . 
G 4 HOH B 15 1015 16 HOH HOH . 
G 4 HOH B 16 1016 13 HOH HOH . 
G 4 HOH B 17 1017 18 HOH HOH . 
G 4 HOH B 18 1018 39 HOH HOH . 
G 4 HOH B 19 1019 60 HOH HOH . 
G 4 HOH B 20 1020 51 HOH HOH . 
G 4 HOH B 21 1021 78 HOH HOH . 
G 4 HOH B 22 1022 74 HOH HOH . 
G 4 HOH B 23 1023 5 HOH HOH . 
G 4 HOH B 24 1024 43 HOH HOH . 
G 4 HOH B 25 1025 84 HOH HOH . 
G 4 HOH B 26 1026 72 HOH HOH . 
G 4 HOH B 27 1027 85 HOH HOH . 
G 4 HOH B 28 1028 57 HOH HOH . 
G 4 HOH B 29 1029 86 HOH HOH . 
G 4 HOH B 30 1030 73 HOH HOH . 
G 4 HOH B 31 1031 77 HOH HOH . 
G 4 HOH B 32 1032 56 HOH HOH . 
G 4 HOH B 33 1033 59 HOH HOH . 
G 4 HOH B 34 1034 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 -7.578 -28.235 6.123 0.99 65.8 ? C1 GOL 901 A 1 
HETATM 2 O O1 GOL . . . D 3 -7.302 -27.069 5.378 0.99 66.81 ? O1 GOL 901 A 1 
HETATM 3 C C2 GOL . . . D 3 -8.367 -27.877 7.378 0.99 63.45 ? C2 GOL 901 A 1 
HETATM 4 O O2 GOL . . . D 3 -7.585 -28.164 8.518 0.99 68.6 ? O2 GOL 901 A 1 
HETATM 5 C C3 GOL . . . D 3 -9.664 -28.676 7.435 0.99 56.92 ? C3 GOL 901 A 1 
HETATM 6 O O3 GOL . . . D 3 -10.558 -28.068 8.335 0.99 50.42 ? O3 GOL 901 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#