data_6GF7 # _model_server_result.job_id 6Sx4nws9VTNOUYKpDWa0_A _model_server_result.datetime_utc '2025-04-27 05:12:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gf7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6GF7 # _exptl.entry_id 6GF7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GF7 _cell.length_a 75.41 _cell.length_b 75.41 _cell.length_c 100.78 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GF7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 32 1_555 A SG CYS 106 A CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 48 A CYS 66 1_555 B SG CYS 48 B CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 51 A CYS 69 1_555 A SG CYS 72 A CYS 90 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 14 B CYS 32 1_555 B SG CYS 106 B CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 51 B CYS 69 1_555 B SG CYS 72 B CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 47 A ASN 65 1_555 C C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale2 B ND2 ASN 47 B ASN 65 1_555 I C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? metalc ? metalc1 A NE2 HIS 11 A HIS 29 1_555 E ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc2 A OD2 ASP 13 A ASP 31 1_555 E ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc3 A OD2 ASP 16 A ASP 34 1_555 H ZN ZN . A ZN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc4 A ND1 HIS 32 A HIS 50 1_555 F ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc5 A NZ LYS 34 A LYS 52 1_555 G ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc6 A OE2 GLU 44 A GLU 62 1_555 F ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc7 A NE2 HIS 53 A HIS 71 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc8 A NE2 HIS 73 A HIS 91 1_555 D ZN ZN . A ZN 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc9 A OE1 GLU 88 A GLU 106 1_555 G ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc10 A OE2 GLU 88 A GLU 106 1_555 G ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc11 A OE1 GLU 101 A GLU 119 1_555 M ZN ZN . B ZN 205 4_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc12 D ZN ZN . A ZN 202 1_555 N O HOH . A HOH 305 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.18 ? metalc ? metalc13 D ZN ZN . A ZN 202 1_555 N O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc14 E ZN ZN . A ZN 203 1_555 N O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc15 E ZN ZN . A ZN 203 1_555 N O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc16 F ZN ZN . A ZN 204 1_555 N O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc17 F ZN ZN . A ZN 204 1_555 N O HOH . A HOH 306 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.186 ? metalc ? metalc18 G ZN ZN . A ZN 205 1_555 N O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc19 G ZN ZN . A ZN 205 1_555 N O HOH . A HOH 306 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.182 ? metalc ? metalc20 H ZN ZN . A ZN 206 1_555 N O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc21 H ZN ZN . A ZN 206 1_555 N O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc22 H ZN ZN . A ZN 206 1_555 N O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc23 N O HOH . A HOH 302 3_645 M ZN ZN . B ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc24 B NE2 HIS 11 B HIS 29 1_555 K ZN ZN . B ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc25 B OD1 ASP 13 B ASP 31 1_555 K ZN ZN . B ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc26 B ND1 HIS 32 B HIS 50 1_555 M ZN ZN . B ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc27 B OD2 ASP 37 B ASP 55 1_555 K ZN ZN . B ZN 203 3_645 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc28 B ND1 HIS 53 B HIS 71 1_555 J ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc29 B OE1 GLU 88 B GLU 106 1_555 M ZN ZN . B ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc30 K ZN ZN . B ZN 203 1_555 O O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc31 L ZN ZN . B ZN 204 1_555 O O HOH . B HOH 304 4_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc32 L ZN ZN . B ZN 204 1_555 O O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc33 L ZN ZN . B ZN 204 1_555 O O HOH . B HOH 307 4_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc34 L ZN ZN . B ZN 204 1_555 O O HOH . B HOH 308 4_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc35 M ZN ZN . B ZN 205 1_555 O O HOH . B HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6GF7 _atom_sites.fract_transf_matrix[1][1] 0.013261 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013261 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 201 900 NAG NAG . D 3 ZN A 1 202 910 ZN ZN . E 3 ZN A 1 203 911 ZN ZN . F 3 ZN A 1 204 912 ZN ZN . G 3 ZN A 1 205 913 ZN ZN . H 3 ZN A 1 206 914 ZN ZN . I 2 NAG B 1 201 900 NAG NAG . J 3 ZN B 1 202 910 ZN ZN . K 3 ZN B 1 203 911 ZN ZN . L 3 ZN B 1 204 912 ZN ZN . M 3 ZN B 1 205 913 ZN ZN . N 4 HOH A 1 301 19 HOH HOH . N 4 HOH A 2 302 16 HOH HOH . N 4 HOH A 3 303 8 HOH HOH . N 4 HOH A 4 304 7 HOH HOH . N 4 HOH A 5 305 3 HOH HOH . N 4 HOH A 6 306 6 HOH HOH . N 4 HOH A 7 307 21 HOH HOH . N 4 HOH A 8 308 11 HOH HOH . N 4 HOH A 9 309 10 HOH HOH . N 4 HOH A 10 310 23 HOH HOH . N 4 HOH A 11 311 20 HOH HOH . N 4 HOH A 12 312 1 HOH HOH . N 4 HOH A 13 313 2 HOH HOH . N 4 HOH A 14 314 4 HOH HOH . N 4 HOH A 15 315 5 HOH HOH . N 4 HOH A 16 316 9 HOH HOH . O 4 HOH B 1 301 18 HOH HOH . O 4 HOH B 2 302 24 HOH HOH . O 4 HOH B 3 303 17 HOH HOH . O 4 HOH B 4 304 15 HOH HOH . O 4 HOH B 5 305 22 HOH HOH . O 4 HOH B 6 306 12 HOH HOH . O 4 HOH B 7 307 14 HOH HOH . O 4 HOH B 8 308 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 2 58.111 23.59 74.935 1 67.9 ? C1 NAG 201 A 1 HETATM 2 C C2 NAG . . . C 2 57.716 22.808 76.189 1 73.27 ? C2 NAG 201 A 1 HETATM 3 C C3 NAG . . . C 2 56.205 22.578 76.232 1 71.13 ? C3 NAG 201 A 1 HETATM 4 C C4 NAG . . . C 2 55.474 23.906 76.082 1 68.64 ? C4 NAG 201 A 1 HETATM 5 C C5 NAG . . . C 2 55.977 24.673 74.857 1 81.41 ? C5 NAG 201 A 1 HETATM 6 C C6 NAG . . . C 2 55.4 26.066 74.761 1 67.71 ? C6 NAG 201 A 1 HETATM 7 C C7 NAG . . . C 2 58.515 20.456 75.651 1 84.71 ? C7 NAG 201 A 1 HETATM 8 C C8 NAG . . . C 2 57.668 20.414 74.402 1 82.47 ? C8 NAG 201 A 1 HETATM 9 N N2 NAG . . . C 2 58.481 21.578 76.401 1 53.09 ? N2 NAG 201 A 1 HETATM 10 O O3 NAG . . . C 2 55.849 21.958 77.462 1 79.84 ? O3 NAG 201 A 1 HETATM 11 O O4 NAG . . . C 2 54.081 23.666 75.921 1 61.61 ? O4 NAG 201 A 1 HETATM 12 O O5 NAG . . . C 2 57.406 24.825 74.904 1 59.92 ? O5 NAG 201 A 1 HETATM 13 O O6 NAG . . . C 2 55.917 26.911 75.781 1 81.01 ? O6 NAG 201 A 1 HETATM 14 O O7 NAG . . . C 2 59.215 19.502 75.975 1 78.89 ? O7 NAG 201 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #