data_6GFB # _model_server_result.job_id 92C42aKrPm2iLWNU9DrIwQ _model_server_result.datetime_utc '2024-11-25 23:16:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gfb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 6GFB # _exptl.entry_id 6GFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GFB _cell.length_a 70.34 _cell.length_b 70.34 _cell.length_c 105.51 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 32 A CYS 153 1_555 A SG CYS 49 A CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 A SG CYS 80 A CYS 201 1_555 A SG CYS 105 A CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 B SG CYS 32 B CYS 153 1_555 B SG CYS 49 B CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 B SG CYS 80 B CYS 201 1_555 B SG CYS 105 B CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc1 A NE2 HIS 10 A HIS 131 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc2 B ND1 HIS 10 B HIS 131 1_555 D ZN ZN . B ZN 301 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.197 ? metalc ? metalc3 B ND1 HIS 107 B HIS 228 1_555 D ZN ZN . B ZN 301 2_665 ? ? ? ? L ? ? ? ? ? ? ? 2.055 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6GFB _atom_sites.fract_transf_matrix[1][1] 0.014217 _atom_sites.fract_transf_matrix[1][2] 0.008208 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009478 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 3 ZN ZN . D 2 ZN B 1 301 1 ZN ZN . E 2 ZN B 1 302 4 ZN ZN . F 3 HOH A 1 401 41 HOH HOH . F 3 HOH A 2 402 29 HOH HOH . F 3 HOH A 3 403 11 HOH HOH . F 3 HOH A 4 404 12 HOH HOH . F 3 HOH A 5 405 27 HOH HOH . F 3 HOH A 6 406 6 HOH HOH . F 3 HOH A 7 407 10 HOH HOH . F 3 HOH A 8 408 22 HOH HOH . F 3 HOH A 9 409 23 HOH HOH . F 3 HOH A 10 410 31 HOH HOH . F 3 HOH A 11 411 58 HOH HOH . F 3 HOH A 12 412 15 HOH HOH . F 3 HOH A 13 413 64 HOH HOH . F 3 HOH A 14 414 48 HOH HOH . F 3 HOH A 15 415 59 HOH HOH . F 3 HOH A 16 416 28 HOH HOH . F 3 HOH A 17 417 66 HOH HOH . F 3 HOH A 18 418 21 HOH HOH . F 3 HOH A 19 419 57 HOH HOH . G 3 HOH B 1 401 8 HOH HOH . G 3 HOH B 2 402 9 HOH HOH . G 3 HOH B 3 403 37 HOH HOH . G 3 HOH B 4 404 63 HOH HOH . G 3 HOH B 5 405 7 HOH HOH . G 3 HOH B 6 406 16 HOH HOH . G 3 HOH B 7 407 17 HOH HOH . G 3 HOH B 8 408 13 HOH HOH . G 3 HOH B 9 409 26 HOH HOH . G 3 HOH B 10 410 36 HOH HOH . G 3 HOH B 11 411 65 HOH HOH . G 3 HOH B 12 412 55 HOH HOH . G 3 HOH B 13 413 5 HOH HOH . G 3 HOH B 14 414 18 HOH HOH . G 3 HOH B 15 415 33 HOH HOH . G 3 HOH B 16 416 24 HOH HOH . G 3 HOH B 17 417 43 HOH HOH . G 3 HOH B 18 418 42 HOH HOH . G 3 HOH B 19 419 44 HOH HOH . G 3 HOH B 20 420 19 HOH HOH . G 3 HOH B 21 421 32 HOH HOH . G 3 HOH B 22 422 25 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id L _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 14.79 _atom_site.Cartn_y 49.005 _atom_site.Cartn_z 10.837 _atom_site.occupancy 0.95 _atom_site.B_iso_or_equiv 48.13 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #