data_6GFG # _model_server_result.job_id NZmWzcgbqmY4ir2o4_nQcw _model_server_result.datetime_utc '2024-11-13 03:59:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gfg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":501}' # _entry.id 6GFG # _exptl.entry_id 6GFG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'D-chiro inositol hexakisphosphate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.5 _cell.angle_beta 88.34 _cell.angle_gamma 62.54 _cell.entry_id 6GFG _cell.length_a 59.566 _cell.length_b 60.82 _cell.length_c 82.439 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GFG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G 1 1 B,H,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 339 B HIS 320 1_555 G ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc2 A SG CYS 349 B CYS 330 1_555 G ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc3 A SG CYS 352 B CYS 333 1_555 G ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc4 A NE2 HIS 365 B HIS 346 1_555 G ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc5 A OD1 ASP 426 B ASP 407 1_555 E MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc6 A OD2 ASP 426 B ASP 407 1_555 F MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc7 D O1B ADP . B ADP 502 1_555 E MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc8 D O2B ADP . B ADP 502 1_555 F MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc9 D O1A ADP . B ADP 502 1_555 F MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc10 B ND1 HIS 339 A HIS 320 1_555 L ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc11 B SG CYS 349 A CYS 330 1_555 L ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc12 B SG CYS 352 A CYS 333 1_555 L ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc13 B NE2 HIS 365 A HIS 346 1_555 L ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? metalc ? metalc14 B OD2 ASP 426 A ASP 407 1_555 J MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc15 B OD1 ASP 426 A ASP 407 1_555 K MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc16 B OD2 ASP 426 A ASP 407 1_555 K MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc17 I O3B ADP . A ADP 502 1_555 J MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? metalc ? metalc18 I O3A ADP . A ADP 502 1_555 J MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc19 I O2B ADP . A ADP 502 1_555 K MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id KGN _chem_comp.mon_nstd_flag . _chem_comp.name 'D-chiro inositol hexakisphosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O34 P4 KGN doub 215 n n O23 P3 KGN doub 216 n n O44 P4 KGN sing 217 n n P4 O24 KGN sing 218 n n P4 O14 KGN sing 219 n n P3 O43 KGN sing 220 n n P3 O33 KGN sing 221 n n P3 O13 KGN sing 222 n n O14 C4 KGN sing 223 n n O13 C3 KGN sing 224 n n C4 C3 KGN sing 225 n n C4 C5 KGN sing 226 n n O35 P5 KGN doub 227 n n O15 C5 KGN sing 228 n n O15 P5 KGN sing 229 n n C3 C2 KGN sing 230 n n O46 P6 KGN doub 231 n n C5 C6 KGN sing 232 n n P5 O25 KGN sing 233 n n P5 O45 KGN sing 234 n n O16 C6 KGN sing 235 n n O16 P6 KGN sing 236 n n C6 C1 KGN sing 237 n n P6 O26 KGN sing 238 n n P6 O36 KGN sing 239 n n C2 C1 KGN sing 240 n n C2 O12 KGN sing 241 n n O32 P2 KGN doub 242 n n O22 P2 KGN sing 243 n n C1 O11 KGN sing 244 n n O12 P2 KGN sing 245 n n P2 O42 KGN sing 246 n n O11 P1 KGN sing 247 n n O21 P1 KGN doub 248 n n O41 P1 KGN sing 249 n n P1 O31 KGN sing 250 n n C1 H1 KGN sing 251 n n C2 H2 KGN sing 252 n n C3 H3 KGN sing 253 n n C4 H4 KGN sing 254 n n C5 H5 KGN sing 255 n n C6 H6 KGN sing 256 n n O22 H7 KGN sing 257 n n O24 H8 KGN sing 258 n n O25 H9 KGN sing 259 n n O26 H10 KGN sing 260 n n O31 H11 KGN sing 261 n n O33 H12 KGN sing 262 n n O36 H13 KGN sing 263 n n O41 H14 KGN sing 264 n n O42 H15 KGN sing 265 n n O43 H16 KGN sing 266 n n O44 H17 KGN sing 267 n n O45 H18 KGN sing 268 n n # _atom_sites.entry_id 6GFG _atom_sites.fract_transf_matrix[1][1] 0.016788 _atom_sites.fract_transf_matrix[1][2] -0.008726 _atom_sites.fract_transf_matrix[1][3] -0.000532 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01853 _atom_sites.fract_transf_matrix[2][3] 0.000096 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012135 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 KGN B 1 501 2 KGN KGN . D 3 ADP B 1 502 4 ADP ADP . E 4 MG B 1 503 7 MG MG . F 4 MG B 1 504 8 MG MG . G 5 ZN B 1 505 10 ZN ZN . H 2 KGN A 1 501 1 KGN KGN . I 3 ADP A 1 502 3 ADP ADP . J 4 MG A 1 503 5 MG MG . K 4 MG A 1 504 6 MG MG . L 5 ZN A 1 505 9 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 KGN . . . H 2 -1.636 -5.651 2.725 0.86 65.56 ? P1 KGN 501 A 1 HETATM 2 P P2 KGN . . . H 2 -5.845 -3.157 4.585 0.86 79.19 ? P2 KGN 501 A 1 HETATM 3 P P3 KGN . . . H 2 -4.976 -2.711 9.032 0.86 82.85 ? P3 KGN 501 A 1 HETATM 4 P P4 KGN . . . H 2 -1.28 -3.335 10.154 0.86 73.62 ? P4 KGN 501 A 1 HETATM 5 P P5 KGN . . . H 2 1.19 -5.532 6.809 0.86 51.77 ? P5 KGN 501 A 1 HETATM 6 P P6 KGN . . . H 2 -3.169 -8.637 5.9 0.86 74.66 ? P6 KGN 501 A 1 HETATM 7 C C1 KGN . . . H 2 -3.046 -5.481 4.967 0.86 71.85 ? C1 KGN 501 A 1 HETATM 8 C C2 KGN . . . H 2 -3.988 -4.594 5.787 0.86 73.13 ? C2 KGN 501 A 1 HETATM 9 C C3 KGN . . . H 2 -3.551 -3.931 7.096 0.86 71.01 ? C3 KGN 501 A 1 HETATM 10 C C4 KGN . . . H 2 -2.366 -4.531 7.835 0.86 68.41 ? C4 KGN 501 A 1 HETATM 11 C C5 KGN . . . H 2 -1.432 -5.112 6.792 0.86 65.33 ? C5 KGN 501 A 1 HETATM 12 C C6 KGN . . . H 2 -2.103 -6.185 5.914 0.86 71.26 ? C6 KGN 501 A 1 HETATM 13 O O11 KGN . . . H 2 -2.303 -4.801 3.942 0.86 73.82 ? O11 KGN 501 A 1 HETATM 14 O O12 KGN . . . H 2 -4.328 -3.489 4.97 0.86 76.37 ? O12 KGN 501 A 1 HETATM 15 O O13 KGN . . . H 2 -4.693 -3.903 7.96 0.86 75.94 ? O13 KGN 501 A 1 HETATM 16 O O14 KGN . . . H 2 -1.696 -3.474 8.57 0.86 74.74 ? O14 KGN 501 A 1 HETATM 17 O O15 KGN . . . H 2 -0.265 -5.578 7.477 0.86 63.44 ? O15 KGN 501 A 1 HETATM 18 O O16 KGN . . . H 2 -2.888 -7.186 6.582 0.86 75.11 ? O16 KGN 501 A 1 HETATM 19 O O21 KGN . . . H 2 -1.978 -7.085 3.034 0.86 66.21 ? O21 KGN 501 A 1 HETATM 20 O O22 KGN . . . H 2 -6.108 -1.771 5.143 0.86 75.55 ? O22 KGN 501 A 1 HETATM 21 O O23 KGN . . . H 2 -4.877 -3.41 10.384 0.86 73.4 ? O23 KGN 501 A 1 HETATM 22 O O24 KGN . . . H 2 0.229 -3.494 10.219 0.86 60.08 ? O24 KGN 501 A 1 HETATM 23 O O25 KGN . . . H 2 1.423 -6.982 6.458 0.86 60.05 ? O25 KGN 501 A 1 HETATM 24 O O26 KGN . . . H 2 -1.844 -9.063 5.279 0.86 67.62 ? O26 KGN 501 A 1 HETATM 25 O O31 KGN . . . H 2 -2.284 -5.044 1.5 0.86 67.19 ? O31 KGN 501 A 1 HETATM 26 O O32 KGN . . . H 2 -6.647 -4.25 5.258 0.86 68.01 ? O32 KGN 501 A 1 HETATM 27 O O33 KGN . . . H 2 -6.375 -2.246 8.708 0.86 84.09 ? O33 KGN 501 A 1 HETATM 28 O O34 KGN . . . H 2 -2.023 -4.385 10.958 0.86 63.89 ? O34 KGN 501 A 1 HETATM 29 O O35 KGN . . . H 2 2.083 -4.944 7.873 0.86 51.88 ? O35 KGN 501 A 1 HETATM 30 O O36 KGN . . . H 2 -4.274 -8.412 4.895 0.86 62.6 ? O36 KGN 501 A 1 HETATM 31 O O41 KGN . . . H 2 -0.146 -5.426 2.799 0.86 66.8 ? O41 KGN 501 A 1 HETATM 32 O O42 KGN . . . H 2 -5.733 -3.213 3.076 0.86 74.97 ? O42 KGN 501 A 1 HETATM 33 O O43 KGN . . . H 2 -3.934 -1.64 8.739 0.86 79.56 ? O43 KGN 501 A 1 HETATM 34 O O44 KGN . . . H 2 -1.716 -1.915 10.445 0.86 64.2 ? O44 KGN 501 A 1 HETATM 35 O O45 KGN . . . H 2 1.021 -4.628 5.626 0.86 54.99 ? O45 KGN 501 A 1 HETATM 36 O O46 KGN . . . H 2 -3.612 -9.48 7.073 0.86 74.42 ? O46 KGN 501 A 1 HETATM 37 H H1 KGN . . . H 2 -3.664 -6.254 4.489 0.86 86.22 ? H1 KGN 501 A 1 HETATM 38 H H2 KGN . . . H 2 -4.897 -5.175 5.995 0.86 87.75 ? H2 KGN 501 A 1 HETATM 39 H H3 KGN . . . H 2 -3.282 -2.893 6.853 0.86 85.21 ? H3 KGN 501 A 1 HETATM 40 H H4 KGN . . . H 2 -2.711 -5.325 8.511 0.86 82.09 ? H4 KGN 501 A 1 HETATM 41 H H5 KGN . . . H 2 -1.136 -4.289 6.127 0.86 78.39 ? H5 KGN 501 A 1 HETATM 42 H H6 KGN . . . H 2 -1.322 -6.676 5.316 0.86 85.51 ? H6 KGN 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 42 #