data_6GFG # _model_server_result.job_id -RUNxcjejxUKahHe8zZZHg _model_server_result.datetime_utc '2024-11-13 04:09:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gfg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":504}' # _entry.id 6GFG # _exptl.entry_id 6GFG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.5 _cell.angle_beta 88.34 _cell.angle_gamma 62.54 _cell.entry_id 6GFG _cell.length_a 59.566 _cell.length_b 60.82 _cell.length_c 82.439 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GFG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G 1 1 B,H,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 339 B HIS 320 1_555 G ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc2 A SG CYS 349 B CYS 330 1_555 G ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc3 A SG CYS 352 B CYS 333 1_555 G ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc4 A NE2 HIS 365 B HIS 346 1_555 G ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc5 A OD1 ASP 426 B ASP 407 1_555 E MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc6 A OD2 ASP 426 B ASP 407 1_555 F MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc7 D O1B ADP . B ADP 502 1_555 E MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc8 D O2B ADP . B ADP 502 1_555 F MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc9 D O1A ADP . B ADP 502 1_555 F MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc10 B ND1 HIS 339 A HIS 320 1_555 L ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc11 B SG CYS 349 A CYS 330 1_555 L ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc12 B SG CYS 352 A CYS 333 1_555 L ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc13 B NE2 HIS 365 A HIS 346 1_555 L ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? metalc ? metalc14 B OD2 ASP 426 A ASP 407 1_555 J MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc15 B OD1 ASP 426 A ASP 407 1_555 K MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc16 B OD2 ASP 426 A ASP 407 1_555 K MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc17 I O3B ADP . A ADP 502 1_555 J MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? metalc ? metalc18 I O3A ADP . A ADP 502 1_555 J MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc19 I O2B ADP . A ADP 502 1_555 K MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6GFG _atom_sites.fract_transf_matrix[1][1] 0.016788 _atom_sites.fract_transf_matrix[1][2] -0.008726 _atom_sites.fract_transf_matrix[1][3] -0.000532 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01853 _atom_sites.fract_transf_matrix[2][3] 0.000096 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012135 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 KGN B 1 501 2 KGN KGN . D 3 ADP B 1 502 4 ADP ADP . E 4 MG B 1 503 7 MG MG . F 4 MG B 1 504 8 MG MG . G 5 ZN B 1 505 10 ZN ZN . H 2 KGN A 1 501 1 KGN KGN . I 3 ADP A 1 502 3 ADP ADP . J 4 MG A 1 503 5 MG MG . K 4 MG A 1 504 6 MG MG . L 5 ZN A 1 505 9 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 4 _atom_site.Cartn_x -5.646 _atom_site.Cartn_y -0.018 _atom_site.Cartn_z 2.417 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 504 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #