data_6GFH # _model_server_result.job_id JFk7PGRsvT7a60i-x8qqmA _model_server_result.datetime_utc '2024-11-13 03:59:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gfh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":503}' # _entry.id 6GFH # _exptl.entry_id 6GFH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 87.81 _cell.angle_beta 88.43 _cell.angle_gamma 63.01 _cell.entry_id 6GFH _cell.length_a 59.632 _cell.length_b 60.563 _cell.length_c 84.482 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GFH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,P 1 1 B,I,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 K N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 339 A HIS 320 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc2 A SG CYS 349 A CYS 330 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc3 A SG CYS 352 A CYS 333 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc4 A NE2 HIS 365 A HIS 346 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc5 A OD1 ASP 426 A ASP 407 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc6 A OD2 ASP 426 A ASP 407 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc7 D O1B ATP . A ATP 502 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc8 B ND1 HIS 339 B HIS 320 1_555 M ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc9 B SG CYS 349 B CYS 330 1_555 M ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc10 B SG CYS 352 B CYS 333 1_555 M ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc11 B NE2 HIS 365 B HIS 346 1_555 M ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc12 B O ASP 387 B ASP 368 1_555 K MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc13 B OG SER 389 B SER 370 1_555 K MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc14 B OD1 ASP 426 B ASP 407 1_555 L MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? metalc ? metalc15 B OD2 ASP 426 B ASP 407 1_555 L MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc16 B OG SER 428 B SER 409 1_555 L MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? metalc ? metalc17 J O1G ATP . B ATP 502 1_555 K MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc18 J O2G ATP . B ATP 502 1_555 K MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc19 J O2B ATP . B ATP 502 1_555 L MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6GFH _atom_sites.fract_transf_matrix[1][1] 0.01677 _atom_sites.fract_transf_matrix[1][2] -0.008539 _atom_sites.fract_transf_matrix[1][3] -0.000213 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018529 _atom_sites.fract_transf_matrix[2][3] -0.000537 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K7V A 1 501 2 K7V K7V . D 3 ATP A 1 502 3 ATP ATP . E 4 MG A 1 503 7 MG MG . F 5 ZN A 1 504 9 ZN ZN . G 6 EDO A 1 505 3 EDO EDO . H 6 EDO A 1 506 4 EDO EDO . I 2 K7V B 1 501 1 K7V K7V . J 3 ATP B 1 502 4 ATP ATP . K 4 MG B 1 503 5 MG MG . L 4 MG B 1 504 6 MG MG . M 5 ZN B 1 505 8 ZN ZN . N 7 B3P B 1 506 1 B3P B3P . O 6 EDO B 1 507 5 EDO EDO . P 8 HOH A 1 601 47 HOH HOH . P 8 HOH A 2 602 24 HOH HOH . P 8 HOH A 3 603 61 HOH HOH . P 8 HOH A 4 604 27 HOH HOH . P 8 HOH A 5 605 32 HOH HOH . P 8 HOH A 6 606 12 HOH HOH . P 8 HOH A 7 607 23 HOH HOH . P 8 HOH A 8 608 29 HOH HOH . P 8 HOH A 9 609 11 HOH HOH . P 8 HOH A 10 610 44 HOH HOH . P 8 HOH A 11 611 16 HOH HOH . P 8 HOH A 12 612 105 HOH HOH . P 8 HOH A 13 613 28 HOH HOH . P 8 HOH A 14 614 21 HOH HOH . P 8 HOH A 15 615 4 HOH HOH . P 8 HOH A 16 616 59 HOH HOH . P 8 HOH A 17 617 20 HOH HOH . P 8 HOH A 18 618 121 HOH HOH . P 8 HOH A 19 619 17 HOH HOH . P 8 HOH A 20 620 40 HOH HOH . P 8 HOH A 21 621 98 HOH HOH . P 8 HOH A 22 622 6 HOH HOH . P 8 HOH A 23 623 54 HOH HOH . P 8 HOH A 24 624 18 HOH HOH . P 8 HOH A 25 625 106 HOH HOH . P 8 HOH A 26 626 99 HOH HOH . P 8 HOH A 27 627 46 HOH HOH . P 8 HOH A 28 628 75 HOH HOH . P 8 HOH A 29 629 60 HOH HOH . P 8 HOH A 30 630 33 HOH HOH . P 8 HOH A 31 631 122 HOH HOH . P 8 HOH A 32 632 117 HOH HOH . P 8 HOH A 33 633 97 HOH HOH . P 8 HOH A 34 634 131 HOH HOH . P 8 HOH A 35 635 123 HOH HOH . P 8 HOH A 36 636 49 HOH HOH . P 8 HOH A 37 637 70 HOH HOH . P 8 HOH A 38 638 5 HOH HOH . P 8 HOH A 39 639 111 HOH HOH . P 8 HOH A 40 640 74 HOH HOH . P 8 HOH A 41 641 126 HOH HOH . P 8 HOH A 42 642 116 HOH HOH . P 8 HOH A 43 643 56 HOH HOH . P 8 HOH A 44 644 68 HOH HOH . P 8 HOH A 45 645 83 HOH HOH . P 8 HOH A 46 646 67 HOH HOH . P 8 HOH A 47 647 94 HOH HOH . P 8 HOH A 48 648 95 HOH HOH . P 8 HOH A 49 649 104 HOH HOH . P 8 HOH A 50 650 73 HOH HOH . P 8 HOH A 51 651 125 HOH HOH . P 8 HOH A 52 652 114 HOH HOH . P 8 HOH A 53 653 96 HOH HOH . P 8 HOH A 54 654 65 HOH HOH . P 8 HOH A 55 655 41 HOH HOH . P 8 HOH A 56 656 107 HOH HOH . P 8 HOH A 57 657 124 HOH HOH . P 8 HOH A 58 658 93 HOH HOH . P 8 HOH A 59 659 51 HOH HOH . P 8 HOH A 60 660 84 HOH HOH . Q 8 HOH B 1 601 118 HOH HOH . Q 8 HOH B 2 602 72 HOH HOH . Q 8 HOH B 3 603 64 HOH HOH . Q 8 HOH B 4 604 2 HOH HOH . Q 8 HOH B 5 605 10 HOH HOH . Q 8 HOH B 6 606 19 HOH HOH . Q 8 HOH B 7 607 52 HOH HOH . Q 8 HOH B 8 608 86 HOH HOH . Q 8 HOH B 9 609 13 HOH HOH . Q 8 HOH B 10 610 3 HOH HOH . Q 8 HOH B 11 611 9 HOH HOH . Q 8 HOH B 12 612 103 HOH HOH . Q 8 HOH B 13 613 45 HOH HOH . Q 8 HOH B 14 614 81 HOH HOH . Q 8 HOH B 15 615 8 HOH HOH . Q 8 HOH B 16 616 58 HOH HOH . Q 8 HOH B 17 617 53 HOH HOH . Q 8 HOH B 18 618 63 HOH HOH . Q 8 HOH B 19 619 50 HOH HOH . Q 8 HOH B 20 620 15 HOH HOH . Q 8 HOH B 21 621 128 HOH HOH . Q 8 HOH B 22 622 80 HOH HOH . Q 8 HOH B 23 623 69 HOH HOH . Q 8 HOH B 24 624 7 HOH HOH . Q 8 HOH B 25 625 89 HOH HOH . Q 8 HOH B 26 626 76 HOH HOH . Q 8 HOH B 27 627 82 HOH HOH . Q 8 HOH B 28 628 57 HOH HOH . Q 8 HOH B 29 629 34 HOH HOH . Q 8 HOH B 30 630 113 HOH HOH . Q 8 HOH B 31 631 62 HOH HOH . Q 8 HOH B 32 632 66 HOH HOH . Q 8 HOH B 33 633 112 HOH HOH . Q 8 HOH B 34 634 77 HOH HOH . Q 8 HOH B 35 635 37 HOH HOH . Q 8 HOH B 36 636 132 HOH HOH . Q 8 HOH B 37 637 35 HOH HOH . Q 8 HOH B 38 638 129 HOH HOH . Q 8 HOH B 39 639 31 HOH HOH . Q 8 HOH B 40 640 102 HOH HOH . Q 8 HOH B 41 641 25 HOH HOH . Q 8 HOH B 42 642 110 HOH HOH . Q 8 HOH B 43 643 22 HOH HOH . Q 8 HOH B 44 644 109 HOH HOH . Q 8 HOH B 45 645 26 HOH HOH . Q 8 HOH B 46 646 87 HOH HOH . Q 8 HOH B 47 647 92 HOH HOH . Q 8 HOH B 48 648 85 HOH HOH . Q 8 HOH B 49 649 78 HOH HOH . Q 8 HOH B 50 650 38 HOH HOH . Q 8 HOH B 51 651 108 HOH HOH . Q 8 HOH B 52 652 127 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 4 _atom_site.Cartn_x -1.405 _atom_site.Cartn_y -1.575 _atom_site.Cartn_z -1.21 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 503 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #