data_6GFH
#
_model_server_result.job_id            KnsSNoh0KpMoFEQOU2aUnw 
_model_server_result.datetime_utc      '2024-11-13 04:10:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gfh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":505}' 
#
_entry.id    6GFH 
#
_exptl.entry_id    6GFH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         87.81 
_cell.angle_beta          88.43 
_cell.angle_gamma         63.01 
_cell.entry_id            6GFH 
_cell.length_a            59.632 
_cell.length_b            60.563 
_cell.length_c            84.482 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GFH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,P 1 1 
B,I,J,K,L,M,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 G N N 
? 6 H N N 
? 6 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 339 A HIS 320 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
metalc ? metalc2 A SG CYS 349 A CYS 330 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc3 A SG CYS 352 A CYS 333 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc4 A NE2 HIS 365 A HIS 346 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? 
metalc ? metalc5 A OD1 ASP 426 A ASP 407 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? 
metalc ? metalc6 A OD2 ASP 426 A ASP 407 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? 
metalc ? metalc7 D O1B ATP . A ATP 502 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc8 B ND1 HIS 339 B HIS 320 1_555 M ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc9 B SG CYS 349 B CYS 330 1_555 M ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc10 B SG CYS 352 B CYS 333 1_555 M ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc11 B NE2 HIS 365 B HIS 346 1_555 M ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc12 B O ASP 387 B ASP 368 1_555 K MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? 
metalc ? metalc13 B OG SER 389 B SER 370 1_555 K MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? 
metalc ? metalc14 B OD1 ASP 426 B ASP 407 1_555 L MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? 
metalc ? metalc15 B OD2 ASP 426 B ASP 407 1_555 L MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc16 B OG SER 428 B SER 409 1_555 L MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? 
metalc ? metalc17 J O1G ATP . B ATP 502 1_555 K MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc18 J O2G ATP . B ATP 502 1_555 K MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? 
metalc ? metalc19 J O2B ATP . B ATP 502 1_555 L MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 176 n n 
C1 C2 EDO sing 177 n n 
C1 H11 EDO sing 178 n n 
C1 H12 EDO sing 179 n n 
O1 HO1 EDO sing 180 n n 
C2 O2 EDO sing 181 n n 
C2 H21 EDO sing 182 n n 
C2 H22 EDO sing 183 n n 
O2 HO2 EDO sing 184 n n 
#
_atom_sites.entry_id                     6GFH 
_atom_sites.fract_transf_matrix[1][1]    0.01677 
_atom_sites.fract_transf_matrix[1][2]    -0.008539 
_atom_sites.fract_transf_matrix[1][3]    -0.000213 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018529 
_atom_sites.fract_transf_matrix[2][3]    -0.000537 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011846 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 K7V A 1 501 2 K7V K7V . 
D 3 ATP A 1 502 3 ATP ATP . 
E 4 MG A 1 503 7 MG MG . 
F 5 ZN A 1 504 9 ZN ZN . 
G 6 EDO A 1 505 3 EDO EDO . 
H 6 EDO A 1 506 4 EDO EDO . 
I 2 K7V B 1 501 1 K7V K7V . 
J 3 ATP B 1 502 4 ATP ATP . 
K 4 MG B 1 503 5 MG MG . 
L 4 MG B 1 504 6 MG MG . 
M 5 ZN B 1 505 8 ZN ZN . 
N 7 B3P B 1 506 1 B3P B3P . 
O 6 EDO B 1 507 5 EDO EDO . 
P 8 HOH A 1 601 47 HOH HOH . 
P 8 HOH A 2 602 24 HOH HOH . 
P 8 HOH A 3 603 61 HOH HOH . 
P 8 HOH A 4 604 27 HOH HOH . 
P 8 HOH A 5 605 32 HOH HOH . 
P 8 HOH A 6 606 12 HOH HOH . 
P 8 HOH A 7 607 23 HOH HOH . 
P 8 HOH A 8 608 29 HOH HOH . 
P 8 HOH A 9 609 11 HOH HOH . 
P 8 HOH A 10 610 44 HOH HOH . 
P 8 HOH A 11 611 16 HOH HOH . 
P 8 HOH A 12 612 105 HOH HOH . 
P 8 HOH A 13 613 28 HOH HOH . 
P 8 HOH A 14 614 21 HOH HOH . 
P 8 HOH A 15 615 4 HOH HOH . 
P 8 HOH A 16 616 59 HOH HOH . 
P 8 HOH A 17 617 20 HOH HOH . 
P 8 HOH A 18 618 121 HOH HOH . 
P 8 HOH A 19 619 17 HOH HOH . 
P 8 HOH A 20 620 40 HOH HOH . 
P 8 HOH A 21 621 98 HOH HOH . 
P 8 HOH A 22 622 6 HOH HOH . 
P 8 HOH A 23 623 54 HOH HOH . 
P 8 HOH A 24 624 18 HOH HOH . 
P 8 HOH A 25 625 106 HOH HOH . 
P 8 HOH A 26 626 99 HOH HOH . 
P 8 HOH A 27 627 46 HOH HOH . 
P 8 HOH A 28 628 75 HOH HOH . 
P 8 HOH A 29 629 60 HOH HOH . 
P 8 HOH A 30 630 33 HOH HOH . 
P 8 HOH A 31 631 122 HOH HOH . 
P 8 HOH A 32 632 117 HOH HOH . 
P 8 HOH A 33 633 97 HOH HOH . 
P 8 HOH A 34 634 131 HOH HOH . 
P 8 HOH A 35 635 123 HOH HOH . 
P 8 HOH A 36 636 49 HOH HOH . 
P 8 HOH A 37 637 70 HOH HOH . 
P 8 HOH A 38 638 5 HOH HOH . 
P 8 HOH A 39 639 111 HOH HOH . 
P 8 HOH A 40 640 74 HOH HOH . 
P 8 HOH A 41 641 126 HOH HOH . 
P 8 HOH A 42 642 116 HOH HOH . 
P 8 HOH A 43 643 56 HOH HOH . 
P 8 HOH A 44 644 68 HOH HOH . 
P 8 HOH A 45 645 83 HOH HOH . 
P 8 HOH A 46 646 67 HOH HOH . 
P 8 HOH A 47 647 94 HOH HOH . 
P 8 HOH A 48 648 95 HOH HOH . 
P 8 HOH A 49 649 104 HOH HOH . 
P 8 HOH A 50 650 73 HOH HOH . 
P 8 HOH A 51 651 125 HOH HOH . 
P 8 HOH A 52 652 114 HOH HOH . 
P 8 HOH A 53 653 96 HOH HOH . 
P 8 HOH A 54 654 65 HOH HOH . 
P 8 HOH A 55 655 41 HOH HOH . 
P 8 HOH A 56 656 107 HOH HOH . 
P 8 HOH A 57 657 124 HOH HOH . 
P 8 HOH A 58 658 93 HOH HOH . 
P 8 HOH A 59 659 51 HOH HOH . 
P 8 HOH A 60 660 84 HOH HOH . 
Q 8 HOH B 1 601 118 HOH HOH . 
Q 8 HOH B 2 602 72 HOH HOH . 
Q 8 HOH B 3 603 64 HOH HOH . 
Q 8 HOH B 4 604 2 HOH HOH . 
Q 8 HOH B 5 605 10 HOH HOH . 
Q 8 HOH B 6 606 19 HOH HOH . 
Q 8 HOH B 7 607 52 HOH HOH . 
Q 8 HOH B 8 608 86 HOH HOH . 
Q 8 HOH B 9 609 13 HOH HOH . 
Q 8 HOH B 10 610 3 HOH HOH . 
Q 8 HOH B 11 611 9 HOH HOH . 
Q 8 HOH B 12 612 103 HOH HOH . 
Q 8 HOH B 13 613 45 HOH HOH . 
Q 8 HOH B 14 614 81 HOH HOH . 
Q 8 HOH B 15 615 8 HOH HOH . 
Q 8 HOH B 16 616 58 HOH HOH . 
Q 8 HOH B 17 617 53 HOH HOH . 
Q 8 HOH B 18 618 63 HOH HOH . 
Q 8 HOH B 19 619 50 HOH HOH . 
Q 8 HOH B 20 620 15 HOH HOH . 
Q 8 HOH B 21 621 128 HOH HOH . 
Q 8 HOH B 22 622 80 HOH HOH . 
Q 8 HOH B 23 623 69 HOH HOH . 
Q 8 HOH B 24 624 7 HOH HOH . 
Q 8 HOH B 25 625 89 HOH HOH . 
Q 8 HOH B 26 626 76 HOH HOH . 
Q 8 HOH B 27 627 82 HOH HOH . 
Q 8 HOH B 28 628 57 HOH HOH . 
Q 8 HOH B 29 629 34 HOH HOH . 
Q 8 HOH B 30 630 113 HOH HOH . 
Q 8 HOH B 31 631 62 HOH HOH . 
Q 8 HOH B 32 632 66 HOH HOH . 
Q 8 HOH B 33 633 112 HOH HOH . 
Q 8 HOH B 34 634 77 HOH HOH . 
Q 8 HOH B 35 635 37 HOH HOH . 
Q 8 HOH B 36 636 132 HOH HOH . 
Q 8 HOH B 37 637 35 HOH HOH . 
Q 8 HOH B 38 638 129 HOH HOH . 
Q 8 HOH B 39 639 31 HOH HOH . 
Q 8 HOH B 40 640 102 HOH HOH . 
Q 8 HOH B 41 641 25 HOH HOH . 
Q 8 HOH B 42 642 110 HOH HOH . 
Q 8 HOH B 43 643 22 HOH HOH . 
Q 8 HOH B 44 644 109 HOH HOH . 
Q 8 HOH B 45 645 26 HOH HOH . 
Q 8 HOH B 46 646 87 HOH HOH . 
Q 8 HOH B 47 647 92 HOH HOH . 
Q 8 HOH B 48 648 85 HOH HOH . 
Q 8 HOH B 49 649 78 HOH HOH . 
Q 8 HOH B 50 650 38 HOH HOH . 
Q 8 HOH B 51 651 108 HOH HOH . 
Q 8 HOH B 52 652 127 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 6 8.065 -33.55 5.172 1 56.02 ? C1 EDO 505 A 1 
HETATM 2 O O1 EDO . . . G 6 7.833 -32.683 6.298 1 51.22 ? O1 EDO 505 A 1 
HETATM 3 C C2 EDO . . . G 6 7.751 -32.803 3.872 1 57.7 ? C2 EDO 505 A 1 
HETATM 4 O O2 EDO . . . G 6 8.742 -31.795 3.586 1 54.65 ? O2 EDO 505 A 1 
HETATM 5 H H11 EDO . . . G 6 9.107 -33.877 5.168 1 67.22 ? H11 EDO 505 A 1 
HETATM 6 H H12 EDO . . . G 6 7.431 -34.435 5.252 1 67.22 ? H12 EDO 505 A 1 
HETATM 7 H HO1 EDO . . . G 6 8.033 -33.158 7.117 1 61.46 ? HO1 EDO 505 A 1 
HETATM 8 H H21 EDO . . . G 6 7.712 -33.517 3.046 1 69.25 ? H21 EDO 505 A 1 
HETATM 9 H H22 EDO . . . G 6 6.769 -32.333 3.953 1 69.25 ? H22 EDO 505 A 1 
HETATM 10 H HO2 EDO . . . G 6 8.514 -31.344 2.761 1 65.58 ? HO2 EDO 505 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#