data_6GG1 # _model_server_result.job_id NnzoaPs1n_gxAQzW1dnqAg _model_server_result.datetime_utc '2024-11-04 22:52:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gg1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6GG1 # _exptl.entry_id 6GG1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GG1 _cell.length_a 38.92 _cell.length_b 65.369 _cell.length_c 67.502 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GG1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 59 1_555 A SG CYS 102 A CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf2 A SG CYS 54 A CYS 106 1_555 A SG CYS 108 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc1 A NE2 HIS 73 A HIS 125 1_555 B NI NI . A NI 301 2_674 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc2 A O SER 110 A SER 162 1_555 B NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc3 A OG SER 110 A SER 162 1_555 B NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc4 A NE2 HIS 115 A HIS 167 1_555 B NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc5 B NI NI . A NI 301 1_555 E O HOH . A HOH 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc6 B NI NI . A NI 301 1_555 E O HOH . A HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6GG1 _atom_sites.fract_transf_matrix[1][1] 0.025694 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014814 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 301 255 NI NI . C 3 SO4 A 1 302 256 SO4 SO4 . D 3 SO4 A 1 303 257 SO4 SO4 . E 4 HOH A 1 401 1090 HOH HOH . E 4 HOH A 2 402 1110 HOH HOH . E 4 HOH A 3 403 1114 HOH HOH . E 4 HOH A 4 404 1094 HOH HOH . E 4 HOH A 5 405 1084 HOH HOH . E 4 HOH A 6 406 1225 HOH HOH . E 4 HOH A 7 407 1139 HOH HOH . E 4 HOH A 8 408 1092 HOH HOH . E 4 HOH A 9 409 1182 HOH HOH . E 4 HOH A 10 410 1148 HOH HOH . E 4 HOH A 11 411 1037 HOH HOH . E 4 HOH A 12 412 1038 HOH HOH . E 4 HOH A 13 413 1189 HOH HOH . E 4 HOH A 14 414 1057 HOH HOH . E 4 HOH A 15 415 1146 HOH HOH . E 4 HOH A 16 416 1233 HOH HOH . E 4 HOH A 17 417 1149 HOH HOH . E 4 HOH A 18 418 1053 HOH HOH . E 4 HOH A 19 419 1069 HOH HOH . E 4 HOH A 20 420 1175 HOH HOH . E 4 HOH A 21 421 1122 HOH HOH . E 4 HOH A 22 422 1019 HOH HOH . E 4 HOH A 23 423 1113 HOH HOH . E 4 HOH A 24 424 1193 HOH HOH . E 4 HOH A 25 425 1158 HOH HOH . E 4 HOH A 26 426 1002 HOH HOH . E 4 HOH A 27 427 1168 HOH HOH . E 4 HOH A 28 428 1022 HOH HOH . E 4 HOH A 29 429 1095 HOH HOH . E 4 HOH A 30 430 1209 HOH HOH . E 4 HOH A 31 431 1140 HOH HOH . E 4 HOH A 32 432 1033 HOH HOH . E 4 HOH A 33 433 1042 HOH HOH . E 4 HOH A 34 434 1096 HOH HOH . E 4 HOH A 35 435 1192 HOH HOH . E 4 HOH A 36 436 1070 HOH HOH . E 4 HOH A 37 437 1051 HOH HOH . E 4 HOH A 38 438 1052 HOH HOH . E 4 HOH A 39 439 1008 HOH HOH . E 4 HOH A 40 440 1218 HOH HOH . E 4 HOH A 41 441 1029 HOH HOH . E 4 HOH A 42 442 1035 HOH HOH . E 4 HOH A 43 443 1102 HOH HOH . E 4 HOH A 44 444 1163 HOH HOH . E 4 HOH A 45 445 1001 HOH HOH . E 4 HOH A 46 446 1101 HOH HOH . E 4 HOH A 47 447 1162 HOH HOH . E 4 HOH A 48 448 1088 HOH HOH . E 4 HOH A 49 449 1072 HOH HOH . E 4 HOH A 50 450 1125 HOH HOH . E 4 HOH A 51 451 1027 HOH HOH . E 4 HOH A 52 452 1221 HOH HOH . E 4 HOH A 53 453 1071 HOH HOH . E 4 HOH A 54 454 1156 HOH HOH . E 4 HOH A 55 455 1129 HOH HOH . E 4 HOH A 56 456 1154 HOH HOH . E 4 HOH A 57 457 1093 HOH HOH . E 4 HOH A 58 458 1100 HOH HOH . E 4 HOH A 59 459 1011 HOH HOH . E 4 HOH A 60 460 1040 HOH HOH . E 4 HOH A 61 461 1009 HOH HOH . E 4 HOH A 62 462 1138 HOH HOH . E 4 HOH A 63 463 1169 HOH HOH . E 4 HOH A 64 464 1085 HOH HOH . E 4 HOH A 65 465 1036 HOH HOH . E 4 HOH A 66 466 1048 HOH HOH . E 4 HOH A 67 467 1185 HOH HOH . E 4 HOH A 68 468 1056 HOH HOH . E 4 HOH A 69 469 1103 HOH HOH . E 4 HOH A 70 470 1023 HOH HOH . E 4 HOH A 71 471 1144 HOH HOH . E 4 HOH A 72 472 1034 HOH HOH . E 4 HOH A 73 473 1134 HOH HOH . E 4 HOH A 74 474 1203 HOH HOH . E 4 HOH A 75 475 1003 HOH HOH . E 4 HOH A 76 476 1207 HOH HOH . E 4 HOH A 77 477 1087 HOH HOH . E 4 HOH A 78 478 1099 HOH HOH . E 4 HOH A 79 479 1190 HOH HOH . E 4 HOH A 80 480 1060 HOH HOH . E 4 HOH A 81 481 1098 HOH HOH . E 4 HOH A 82 482 1178 HOH HOH . E 4 HOH A 83 483 1198 HOH HOH . E 4 HOH A 84 484 1086 HOH HOH . E 4 HOH A 85 485 1194 HOH HOH . E 4 HOH A 86 486 1204 HOH HOH . E 4 HOH A 87 487 1016 HOH HOH . E 4 HOH A 88 488 1133 HOH HOH . E 4 HOH A 89 489 1047 HOH HOH . E 4 HOH A 90 490 1039 HOH HOH . E 4 HOH A 91 491 1044 HOH HOH . E 4 HOH A 92 492 1014 HOH HOH . E 4 HOH A 93 493 1205 HOH HOH . E 4 HOH A 94 494 1123 HOH HOH . E 4 HOH A 95 495 1229 HOH HOH . E 4 HOH A 96 496 1079 HOH HOH . E 4 HOH A 97 497 1007 HOH HOH . E 4 HOH A 98 498 1172 HOH HOH . E 4 HOH A 99 499 1239 HOH HOH . E 4 HOH A 100 500 1183 HOH HOH . E 4 HOH A 101 501 1128 HOH HOH . E 4 HOH A 102 502 1018 HOH HOH . E 4 HOH A 103 503 1041 HOH HOH . E 4 HOH A 104 504 1187 HOH HOH . E 4 HOH A 105 505 1104 HOH HOH . E 4 HOH A 106 506 1028 HOH HOH . E 4 HOH A 107 507 1202 HOH HOH . E 4 HOH A 108 508 1061 HOH HOH . E 4 HOH A 109 509 1049 HOH HOH . E 4 HOH A 110 510 1238 HOH HOH . E 4 HOH A 111 511 1200 HOH HOH . E 4 HOH A 112 512 1157 HOH HOH . E 4 HOH A 113 513 1006 HOH HOH . E 4 HOH A 114 514 1073 HOH HOH . E 4 HOH A 115 515 1230 HOH HOH . E 4 HOH A 116 516 1197 HOH HOH . E 4 HOH A 117 517 1031 HOH HOH . E 4 HOH A 118 518 1063 HOH HOH . E 4 HOH A 119 519 1076 HOH HOH . E 4 HOH A 120 520 1115 HOH HOH . E 4 HOH A 121 521 1105 HOH HOH . E 4 HOH A 122 522 1026 HOH HOH . E 4 HOH A 123 523 1118 HOH HOH . E 4 HOH A 124 524 1152 HOH HOH . E 4 HOH A 125 525 1025 HOH HOH . E 4 HOH A 126 526 1145 HOH HOH . E 4 HOH A 127 527 1153 HOH HOH . E 4 HOH A 128 528 1201 HOH HOH . E 4 HOH A 129 529 1195 HOH HOH . E 4 HOH A 130 530 1234 HOH HOH . E 4 HOH A 131 531 1010 HOH HOH . E 4 HOH A 132 532 1219 HOH HOH . E 4 HOH A 133 533 1150 HOH HOH . E 4 HOH A 134 534 1210 HOH HOH . E 4 HOH A 135 535 1237 HOH HOH . E 4 HOH A 136 536 1081 HOH HOH . E 4 HOH A 137 537 1222 HOH HOH . E 4 HOH A 138 538 1024 HOH HOH . E 4 HOH A 139 539 1117 HOH HOH . E 4 HOH A 140 540 1135 HOH HOH . E 4 HOH A 141 541 1067 HOH HOH . E 4 HOH A 142 542 1120 HOH HOH . E 4 HOH A 143 543 1054 HOH HOH . E 4 HOH A 144 544 1124 HOH HOH . E 4 HOH A 145 545 1143 HOH HOH . E 4 HOH A 146 546 1161 HOH HOH . E 4 HOH A 147 547 1136 HOH HOH . E 4 HOH A 148 548 1074 HOH HOH . E 4 HOH A 149 549 1199 HOH HOH . E 4 HOH A 150 550 1206 HOH HOH . E 4 HOH A 151 551 1173 HOH HOH . E 4 HOH A 152 552 1188 HOH HOH . E 4 HOH A 153 553 1226 HOH HOH . E 4 HOH A 154 554 1106 HOH HOH . E 4 HOH A 155 555 1020 HOH HOH . E 4 HOH A 156 556 1077 HOH HOH . E 4 HOH A 157 557 1171 HOH HOH . E 4 HOH A 158 558 1046 HOH HOH . E 4 HOH A 159 559 1075 HOH HOH . E 4 HOH A 160 560 1078 HOH HOH . E 4 HOH A 161 561 1170 HOH HOH . E 4 HOH A 162 562 1127 HOH HOH . E 4 HOH A 163 563 1137 HOH HOH . E 4 HOH A 164 564 1165 HOH HOH . E 4 HOH A 165 565 1015 HOH HOH . E 4 HOH A 166 566 1236 HOH HOH . E 4 HOH A 167 567 1240 HOH HOH . E 4 HOH A 168 568 1097 HOH HOH . E 4 HOH A 169 569 1108 HOH HOH . E 4 HOH A 170 570 1176 HOH HOH . E 4 HOH A 171 571 1243 HOH HOH . E 4 HOH A 172 572 1215 HOH HOH . E 4 HOH A 173 573 1223 HOH HOH . E 4 HOH A 174 574 1021 HOH HOH . E 4 HOH A 175 575 1058 HOH HOH . E 4 HOH A 176 576 1232 HOH HOH . E 4 HOH A 177 577 1228 HOH HOH . E 4 HOH A 178 578 1186 HOH HOH . E 4 HOH A 179 579 1212 HOH HOH . E 4 HOH A 180 580 1191 HOH HOH . E 4 HOH A 181 581 1231 HOH HOH . E 4 HOH A 182 582 1068 HOH HOH . E 4 HOH A 183 583 1244 HOH HOH . E 4 HOH A 184 584 1167 HOH HOH . E 4 HOH A 185 585 1164 HOH HOH . E 4 HOH A 186 586 1107 HOH HOH . E 4 HOH A 187 587 1241 HOH HOH . E 4 HOH A 188 588 1211 HOH HOH . E 4 HOH A 189 589 1213 HOH HOH . E 4 HOH A 190 590 1119 HOH HOH . E 4 HOH A 191 591 1159 HOH HOH . E 4 HOH A 192 592 1179 HOH HOH . E 4 HOH A 193 593 1214 HOH HOH . E 4 HOH A 194 594 1180 HOH HOH . E 4 HOH A 195 595 1196 HOH HOH . E 4 HOH A 196 596 1064 HOH HOH . E 4 HOH A 197 597 1224 HOH HOH . E 4 HOH A 198 598 1208 HOH HOH . E 4 HOH A 199 599 1166 HOH HOH . E 4 HOH A 200 600 1235 HOH HOH . E 4 HOH A 201 601 1181 HOH HOH . E 4 HOH A 202 602 1080 HOH HOH . E 4 HOH A 203 603 1177 HOH HOH . E 4 HOH A 204 604 1066 HOH HOH . E 4 HOH A 205 605 1227 HOH HOH . E 4 HOH A 206 606 1174 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 30.982 _atom_site.Cartn_y 55.993 _atom_site.Cartn_z 24.366 _atom_site.occupancy 0.8 _atom_site.B_iso_or_equiv 19.31 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #