data_6GG5
#
_model_server_result.job_id            8-pwZ_fxnBjNN_ssZfs3Xg 
_model_server_result.datetime_utc      '2024-10-18 16:29:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gg5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":603}' 
#
_entry.id    6GG5 
#
_exptl.entry_id    6GG5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              204.225 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TRYPTOPHAN 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.02 
_cell.angle_gamma         90 
_cell.entry_id            6GG5 
_cell.length_a            96.88 
_cell.length_b            70.576 
_cell.length_c            168.502 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GG5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 L N N 
? 3 P N N 
? 3 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LEU 493 A LEU 473 1_555 A N CSO 494 A CSO 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale2 A C CSO 494 A CSO 474 1_555 A N LYS 495 A LYS 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale3 B C LEU 493 B LEU 473 1_555 B N CSO 494 B CSO 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale4 B C CSO 494 B CSO 474 1_555 B N LYS 495 B LYS 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale5 C C LEU 493 C LEU 473 1_555 C N CSO 494 C CSO 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale6 C C CSO 494 C CSO 474 1_555 C N LYS 495 C LYS 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale7 D C LEU 493 D LEU 473 1_555 D N CSO 494 D CSO 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale8 D C CSO 494 D CSO 474 1_555 D N LYS 495 D LYS 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
metalc ? metalc1 A OD1 ASN 95 A ASN 75 1_555 I K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.047 ? 
metalc ? metalc2 A OG SER 97 A SER 77 1_555 I K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? 
metalc ? metalc3 A OD1 ASP 133 A ASP 113 1_555 I K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.104 ? 
metalc ? metalc4 A O THR 134 A THR 114 1_555 I K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? 
metalc ? metalc5 B OD1 ASN 95 B ASN 75 1_555 N K K . B K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.133 ? 
metalc ? metalc6 B OG SER 97 B SER 77 1_555 N K K . B K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.006 ? 
metalc ? metalc7 B OD1 ASP 133 B ASP 113 1_555 N K K . B K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.057 ? 
metalc ? metalc8 B O THR 134 B THR 114 1_555 N K K . B K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? 
metalc ? metalc9 C OD1 ASN 95 C ASN 75 1_555 Q K K . C K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.297 ? 
metalc ? metalc10 C OG SER 97 C SER 77 1_555 Q K K . C K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.154 ? 
metalc ? metalc11 C OD1 ASP 133 C ASP 113 1_555 Q K K . C K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.279 ? 
metalc ? metalc12 C O THR 134 C THR 114 1_555 Q K K . C K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.159 ? 
metalc ? metalc13 D OD1 ASN 95 D ASN 75 1_555 T K K . D K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? 
metalc ? metalc14 D OG SER 97 D SER 77 1_555 T K K . D K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? 
metalc ? metalc15 D OD1 ASP 133 D ASP 113 1_555 T K K . D K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? 
metalc ? metalc16 D O THR 134 D THR 114 1_555 T K K . D K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
#
_chem_comp.formula           'C11 H12 N2 O2' 
_chem_comp.formula_weight    204.225 
_chem_comp.id                TRP 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              TRYPTOPHAN 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA TRP sing 324 n n 
N H TRP sing 325 n n 
N H2 TRP sing 326 n n 
CA C TRP sing 327 n n 
CA CB TRP sing 328 n n 
CA HA TRP sing 329 n n 
C O TRP doub 330 n n 
C OXT TRP sing 331 n n 
CB CG TRP sing 332 n n 
CB HB2 TRP sing 333 n n 
CB HB3 TRP sing 334 n n 
CG CD1 TRP doub 335 n y 
CG CD2 TRP sing 336 n y 
CD1 NE1 TRP sing 337 n y 
CD1 HD1 TRP sing 338 n n 
CD2 CE2 TRP doub 339 n y 
CD2 CE3 TRP sing 340 n y 
NE1 CE2 TRP sing 341 n y 
NE1 HE1 TRP sing 342 n n 
CE2 CZ2 TRP sing 343 n y 
CE3 CZ3 TRP doub 344 n y 
CE3 HE3 TRP sing 345 n n 
CZ2 CH2 TRP doub 346 n y 
CZ2 HZ2 TRP sing 347 n n 
CZ3 CH2 TRP sing 348 n y 
CZ3 HZ3 TRP sing 349 n n 
CH2 HH2 TRP sing 350 n n 
OXT HXT TRP sing 351 n n 
#
_atom_sites.entry_id                     6GG5 
_atom_sites.fract_transf_matrix[1][1]    0.010322 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002963 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014169 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006174 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PO4 A 1 601 601 PO4 PO4 . 
F 2 PO4 A 1 602 602 PO4 PO4 . 
G 3 TRP A 1 603 603 TRP TRP . 
H 2 PO4 A 1 604 604 PO4 PO4 . 
I 4 K A 1 605 605 K K . 
J 2 PO4 B 1 601 601 PO4 PO4 . 
K 2 PO4 B 1 602 602 PO4 PO4 . 
L 3 TRP B 1 603 603 TRP TRP . 
M 2 PO4 B 1 604 604 PO4 PO4 . 
N 4 K B 1 605 605 K K . 
O 2 PO4 C 1 601 601 PO4 PO4 . 
P 3 TRP C 1 602 603 TRP TRP . 
Q 4 K C 1 603 605 K K . 
R 2 PO4 D 1 601 601 PO4 PO4 . 
S 3 TRP D 1 602 603 TRP TRP . 
T 4 K D 1 603 605 K K . 
U 5 HOH A 1 701 10 HOH HOH . 
U 5 HOH A 2 702 16 HOH HOH . 
U 5 HOH A 3 703 15 HOH HOH . 
U 5 HOH A 4 704 26 HOH HOH . 
U 5 HOH A 5 705 9 HOH HOH . 
U 5 HOH A 6 706 19 HOH HOH . 
U 5 HOH A 7 707 25 HOH HOH . 
U 5 HOH A 8 708 6 HOH HOH . 
U 5 HOH A 9 709 4 HOH HOH . 
V 5 HOH B 1 701 22 HOH HOH . 
V 5 HOH B 2 702 14 HOH HOH . 
V 5 HOH B 3 703 20 HOH HOH . 
W 5 HOH C 1 701 8 HOH HOH . 
W 5 HOH C 2 702 1 HOH HOH . 
W 5 HOH C 3 703 7 HOH HOH . 
W 5 HOH C 4 704 13 HOH HOH . 
W 5 HOH C 5 705 5 HOH HOH . 
W 5 HOH C 6 706 2 HOH HOH . 
W 5 HOH C 7 707 11 HOH HOH . 
W 5 HOH C 8 708 23 HOH HOH . 
W 5 HOH C 9 709 24 HOH HOH . 
W 5 HOH C 10 710 18 HOH HOH . 
W 5 HOH C 11 711 27 HOH HOH . 
X 5 HOH D 1 701 17 HOH HOH . 
X 5 HOH D 2 702 12 HOH HOH . 
X 5 HOH D 3 703 21 HOH HOH . 
X 5 HOH D 4 704 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N TRP . . . L 3 313.644 -47.344 212.648 1 45.74 ? N TRP 603 B 1 
HETATM 2 C CA TRP . . . L 3 312.845 -47.447 211.398 1 45.8 ? CA TRP 603 B 1 
HETATM 3 C C TRP . . . L 3 311.449 -48.009 211.597 1 46.15 ? C TRP 603 B 1 
HETATM 4 O O TRP . . . L 3 310.585 -47.949 210.723 1 46.47 ? O TRP 603 B 1 
HETATM 5 C CB TRP . . . L 3 313.602 -48.248 210.342 1 45.73 ? CB TRP 603 B 1 
HETATM 6 C CG TRP . . . L 3 313.949 -49.674 210.644 1 45.72 ? CG TRP 603 B 1 
HETATM 7 C CD1 TRP . . . L 3 315.163 -50.161 211.023 1 45.58 ? CD1 TRP 603 B 1 
HETATM 8 C CD2 TRP . . . L 3 313.106 -50.788 210.489 1 46.01 ? CD2 TRP 603 B 1 
HETATM 9 N NE1 TRP . . . L 3 315.122 -51.524 211.146 1 45.74 ? NE1 TRP 603 B 1 
HETATM 10 C CE2 TRP . . . L 3 313.865 -51.936 210.821 1 46.07 ? CE2 TRP 603 B 1 
HETATM 11 C CE3 TRP . . . L 3 311.773 -50.94 210.095 1 46.42 ? CE3 TRP 603 B 1 
HETATM 12 C CZ2 TRP . . . L 3 313.339 -53.201 210.788 1 46.56 ? CZ2 TRP 603 B 1 
HETATM 13 C CZ3 TRP . . . L 3 311.246 -52.2 210.046 1 46.82 ? CZ3 TRP 603 B 1 
HETATM 14 C CH2 TRP . . . L 3 312.027 -53.324 210.391 1 46.94 ? CH2 TRP 603 B 1 
HETATM 15 O OXT TRP . . . L 3 311.152 -48.534 212.645 1 46.37 ? OXT TRP 603 B 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           15 
#