data_6GG8
#
_model_server_result.job_id            1ILyvXAEzBKm0ybQ-mRXtQ 
_model_server_result.datetime_utc      '2024-11-22 05:29:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gg8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1101}' 
#
_entry.id    6GG8 
#
_exptl.entry_id    6GG8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6GG8 
_cell.length_a            48.654 
_cell.length_b            77.953 
_cell.length_c            78.755 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GG8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 285 n n 
C1 H11 MPD sing 286 n n 
C1 H12 MPD sing 287 n n 
C1 H13 MPD sing 288 n n 
C2 O2 MPD sing 289 n n 
C2 CM MPD sing 290 n n 
C2 C3 MPD sing 291 n n 
O2 HO2 MPD sing 292 n n 
CM HM1 MPD sing 293 n n 
CM HM2 MPD sing 294 n n 
CM HM3 MPD sing 295 n n 
C3 C4 MPD sing 296 n n 
C3 H31 MPD sing 297 n n 
C3 H32 MPD sing 298 n n 
C4 O4 MPD sing 299 n n 
C4 C5 MPD sing 300 n n 
C4 H4 MPD sing 301 n n 
O4 HO4 MPD sing 302 n n 
C5 H51 MPD sing 303 n n 
C5 H52 MPD sing 304 n n 
C5 H53 MPD sing 305 n n 
#
_atom_sites.entry_id                     6GG8 
_atom_sites.fract_transf_matrix[1][1]    0.020553 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012828 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012698 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MPD A 1 1101 1 MPD MPD . 
D 4 EY8 A 1 1102 1 EY8 INH . 
E 5 HOH A 1 1201 2 HOH HOH . 
E 5 HOH A 2 1202 146 HOH HOH . 
E 5 HOH A 3 1203 76 HOH HOH . 
E 5 HOH A 4 1204 65 HOH HOH . 
E 5 HOH A 5 1205 34 HOH HOH . 
E 5 HOH A 6 1206 12 HOH HOH . 
E 5 HOH A 7 1207 18 HOH HOH . 
E 5 HOH A 8 1208 104 HOH HOH . 
E 5 HOH A 9 1209 32 HOH HOH . 
E 5 HOH A 10 1210 40 HOH HOH . 
E 5 HOH A 11 1211 57 HOH HOH . 
E 5 HOH A 12 1212 3 HOH HOH . 
E 5 HOH A 13 1213 17 HOH HOH . 
E 5 HOH A 14 1214 8 HOH HOH . 
E 5 HOH A 15 1215 48 HOH HOH . 
E 5 HOH A 16 1216 13 HOH HOH . 
E 5 HOH A 17 1217 115 HOH HOH . 
E 5 HOH A 18 1218 68 HOH HOH . 
E 5 HOH A 19 1219 79 HOH HOH . 
E 5 HOH A 20 1220 7 HOH HOH . 
E 5 HOH A 21 1221 168 HOH HOH . 
E 5 HOH A 22 1222 53 HOH HOH . 
E 5 HOH A 23 1223 161 HOH HOH . 
E 5 HOH A 24 1224 11 HOH HOH . 
E 5 HOH A 25 1225 46 HOH HOH . 
E 5 HOH A 26 1226 85 HOH HOH . 
E 5 HOH A 27 1227 60 HOH HOH . 
E 5 HOH A 28 1228 179 HOH HOH . 
E 5 HOH A 29 1229 58 HOH HOH . 
E 5 HOH A 30 1230 41 HOH HOH . 
E 5 HOH A 31 1231 134 HOH HOH . 
E 5 HOH A 32 1232 55 HOH HOH . 
E 5 HOH A 33 1233 78 HOH HOH . 
E 5 HOH A 34 1234 193 HOH HOH . 
E 5 HOH A 35 1235 54 HOH HOH . 
E 5 HOH A 36 1236 81 HOH HOH . 
E 5 HOH A 37 1237 62 HOH HOH . 
E 5 HOH A 38 1238 27 HOH HOH . 
E 5 HOH A 39 1239 117 HOH HOH . 
E 5 HOH A 40 1240 101 HOH HOH . 
E 5 HOH A 41 1241 38 HOH HOH . 
E 5 HOH A 42 1242 112 HOH HOH . 
E 5 HOH A 43 1243 72 HOH HOH . 
E 5 HOH A 44 1244 169 HOH HOH . 
E 5 HOH A 45 1245 108 HOH HOH . 
E 5 HOH A 46 1246 119 HOH HOH . 
E 5 HOH A 47 1247 70 HOH HOH . 
E 5 HOH A 48 1248 77 HOH HOH . 
E 5 HOH A 49 1249 125 HOH HOH . 
E 5 HOH A 50 1250 102 HOH HOH . 
E 5 HOH A 51 1251 66 HOH HOH . 
E 5 HOH A 52 1252 197 HOH HOH . 
E 5 HOH A 53 1253 194 HOH HOH . 
E 5 HOH A 54 1254 33 HOH HOH . 
E 5 HOH A 55 1255 144 HOH HOH . 
E 5 HOH A 56 1256 73 HOH HOH . 
E 5 HOH A 57 1257 148 HOH HOH . 
E 5 HOH A 58 1258 152 HOH HOH . 
E 5 HOH A 59 1259 156 HOH HOH . 
E 5 HOH A 60 1260 16 HOH HOH . 
E 5 HOH A 61 1261 82 HOH HOH . 
E 5 HOH A 62 1262 99 HOH HOH . 
E 5 HOH A 63 1263 172 HOH HOH . 
E 5 HOH A 64 1264 111 HOH HOH . 
E 5 HOH A 65 1265 103 HOH HOH . 
E 5 HOH A 66 1266 166 HOH HOH . 
E 5 HOH A 67 1267 59 HOH HOH . 
E 5 HOH A 68 1268 22 HOH HOH . 
E 5 HOH A 69 1269 1 HOH HOH . 
E 5 HOH A 70 1270 26 HOH HOH . 
E 5 HOH A 71 1271 20 HOH HOH . 
E 5 HOH A 72 1272 126 HOH HOH . 
E 5 HOH A 73 1273 129 HOH HOH . 
E 5 HOH A 74 1274 145 HOH HOH . 
E 5 HOH A 75 1275 165 HOH HOH . 
E 5 HOH A 76 1276 15 HOH HOH . 
E 5 HOH A 77 1277 42 HOH HOH . 
E 5 HOH A 78 1278 87 HOH HOH . 
E 5 HOH A 79 1279 171 HOH HOH . 
E 5 HOH A 80 1280 121 HOH HOH . 
E 5 HOH A 81 1281 9 HOH HOH . 
E 5 HOH A 82 1282 36 HOH HOH . 
E 5 HOH A 83 1283 132 HOH HOH . 
E 5 HOH A 84 1284 67 HOH HOH . 
E 5 HOH A 85 1285 88 HOH HOH . 
E 5 HOH A 86 1286 43 HOH HOH . 
E 5 HOH A 87 1287 30 HOH HOH . 
E 5 HOH A 88 1288 63 HOH HOH . 
E 5 HOH A 89 1289 83 HOH HOH . 
E 5 HOH A 90 1290 100 HOH HOH . 
E 5 HOH A 91 1291 61 HOH HOH . 
E 5 HOH A 92 1292 86 HOH HOH . 
E 5 HOH A 93 1293 6 HOH HOH . 
E 5 HOH A 94 1294 4 HOH HOH . 
E 5 HOH A 95 1295 140 HOH HOH . 
E 5 HOH A 96 1296 10 HOH HOH . 
E 5 HOH A 97 1297 94 HOH HOH . 
E 5 HOH A 98 1298 5 HOH HOH . 
E 5 HOH A 99 1299 80 HOH HOH . 
E 5 HOH A 100 1300 35 HOH HOH . 
E 5 HOH A 101 1301 183 HOH HOH . 
E 5 HOH A 102 1302 19 HOH HOH . 
E 5 HOH A 103 1303 98 HOH HOH . 
E 5 HOH A 104 1304 114 HOH HOH . 
E 5 HOH A 105 1305 113 HOH HOH . 
E 5 HOH A 106 1306 155 HOH HOH . 
E 5 HOH A 107 1307 191 HOH HOH . 
E 5 HOH A 108 1308 170 HOH HOH . 
E 5 HOH A 109 1309 52 HOH HOH . 
E 5 HOH A 110 1310 23 HOH HOH . 
E 5 HOH A 111 1311 51 HOH HOH . 
E 5 HOH A 112 1312 149 HOH HOH . 
E 5 HOH A 113 1313 69 HOH HOH . 
E 5 HOH A 114 1314 163 HOH HOH . 
E 5 HOH A 115 1315 14 HOH HOH . 
E 5 HOH A 116 1316 39 HOH HOH . 
E 5 HOH A 117 1317 28 HOH HOH . 
E 5 HOH A 118 1318 75 HOH HOH . 
E 5 HOH A 119 1319 109 HOH HOH . 
E 5 HOH A 120 1320 74 HOH HOH . 
E 5 HOH A 121 1321 93 HOH HOH . 
E 5 HOH A 122 1322 90 HOH HOH . 
E 5 HOH A 123 1323 162 HOH HOH . 
E 5 HOH A 124 1324 176 HOH HOH . 
E 5 HOH A 125 1325 71 HOH HOH . 
E 5 HOH A 126 1326 160 HOH HOH . 
E 5 HOH A 127 1327 164 HOH HOH . 
E 5 HOH A 128 1328 50 HOH HOH . 
E 5 HOH A 129 1329 37 HOH HOH . 
E 5 HOH A 130 1330 135 HOH HOH . 
E 5 HOH A 131 1331 167 HOH HOH . 
E 5 HOH A 132 1332 106 HOH HOH . 
E 5 HOH A 133 1333 47 HOH HOH . 
E 5 HOH A 134 1334 91 HOH HOH . 
E 5 HOH A 135 1335 29 HOH HOH . 
E 5 HOH A 136 1336 175 HOH HOH . 
E 5 HOH A 137 1337 139 HOH HOH . 
E 5 HOH A 138 1338 195 HOH HOH . 
E 5 HOH A 139 1339 130 HOH HOH . 
E 5 HOH A 140 1340 178 HOH HOH . 
E 5 HOH A 141 1341 177 HOH HOH . 
E 5 HOH A 142 1342 136 HOH HOH . 
E 5 HOH A 143 1343 186 HOH HOH . 
E 5 HOH A 144 1344 190 HOH HOH . 
E 5 HOH A 145 1345 151 HOH HOH . 
E 5 HOH A 146 1346 107 HOH HOH . 
E 5 HOH A 147 1347 181 HOH HOH . 
E 5 HOH A 148 1348 89 HOH HOH . 
E 5 HOH A 149 1349 97 HOH HOH . 
E 5 HOH A 150 1350 147 HOH HOH . 
E 5 HOH A 151 1351 123 HOH HOH . 
E 5 HOH A 152 1352 137 HOH HOH . 
E 5 HOH A 153 1353 118 HOH HOH . 
E 5 HOH A 154 1354 187 HOH HOH . 
E 5 HOH A 155 1355 173 HOH HOH . 
E 5 HOH A 156 1356 143 HOH HOH . 
E 5 HOH A 157 1357 196 HOH HOH . 
E 5 HOH A 158 1358 154 HOH HOH . 
E 5 HOH A 159 1359 157 HOH HOH . 
E 5 HOH A 160 1360 174 HOH HOH . 
E 5 HOH A 161 1361 182 HOH HOH . 
E 5 HOH A 162 1362 49 HOH HOH . 
E 5 HOH A 163 1363 138 HOH HOH . 
E 5 HOH A 164 1364 189 HOH HOH . 
E 5 HOH A 165 1365 120 HOH HOH . 
E 5 HOH A 166 1366 192 HOH HOH . 
E 5 HOH A 167 1367 158 HOH HOH . 
E 5 HOH A 168 1368 122 HOH HOH . 
E 5 HOH A 169 1369 116 HOH HOH . 
E 5 HOH A 170 1370 142 HOH HOH . 
E 5 HOH A 171 1371 159 HOH HOH . 
E 5 HOH A 172 1372 95 HOH HOH . 
E 5 HOH A 173 1373 133 HOH HOH . 
E 5 HOH A 174 1374 153 HOH HOH . 
E 5 HOH A 175 1375 188 HOH HOH . 
E 5 HOH A 176 1376 92 HOH HOH . 
E 5 HOH A 177 1377 185 HOH HOH . 
E 5 HOH A 178 1378 141 HOH HOH . 
F 5 HOH B 1 1501 44 HOH HOH . 
F 5 HOH B 2 1502 21 HOH HOH . 
F 5 HOH B 3 1503 150 HOH HOH . 
F 5 HOH B 4 1504 64 HOH HOH . 
F 5 HOH B 5 1505 180 HOH HOH . 
F 5 HOH B 6 1506 131 HOH HOH . 
F 5 HOH B 7 1507 84 HOH HOH . 
F 5 HOH B 8 1508 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . C 3 1.658 16.37 -7.017 1 40.18 ? C1 MPD 1101 A 1 
HETATM 2 C C2 MPD . . . C 3 0.995 15.083 -7.478 1 41.31 ? C2 MPD 1101 A 1 
HETATM 3 O O2 MPD . . . C 3 0.377 14.474 -6.326 1 42.71 ? O2 MPD 1101 A 1 
HETATM 4 C CM MPD . . . C 3 2.045 14.12 -8.028 1 35.76 ? CM MPD 1101 A 1 
HETATM 5 C C3 MPD . . . C 3 -0.047 15.374 -8.626 1 43.09 ? C3 MPD 1101 A 1 
HETATM 6 C C4 MPD . . . C 3 -1.54 15.635 -8.269 1 43.76 ? C4 MPD 1101 A 1 
HETATM 7 O O4 MPD . . . C 3 -1.775 16.216 -6.979 1 42.65 ? O4 MPD 1101 A 1 
HETATM 8 C C5 MPD . . . C 3 -2.269 16.419 -9.338 1 42.61 ? C5 MPD 1101 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#