data_6GGN
#
_model_server_result.job_id            fsw_Hi-YqoiQMjsWBVFjGg 
_model_server_result.datetime_utc      '2025-03-23 01:52:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ggn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    6GGN 
#
_exptl.entry_id    6GGN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              552.452 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4~{S})-4-(4-chloranyl-2-methyl-phenyl)-5-(5-chloranyl-2-methyl-phenyl)-2-(2,4-dimethoxypyrimidin-5-yl)-3-propan-2-yl-4~{H}-pyrrolo[3,4-d]imidazol-6-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6GGN 
_cell.length_a            56.08 
_cell.length_b            56.08 
_cell.length_c            106.698 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GGN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C28 H27 Cl2 N5 O3' 
_chem_comp.formula_weight    552.452 
_chem_comp.id                EYH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4~{S})-4-(4-chloranyl-2-methyl-phenyl)-5-(5-chloranyl-2-methyl-phenyl)-2-(2,4-dimethoxypyrimidin-5-yl)-3-propan-2-yl-4~{H}-pyrrolo[3,4-d]imidazol-6-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 C4 EYH sing 83 n n 
C4 C6 EYH sing 84 n n 
C4 N3 EYH sing 85 n n 
C38 O37 EYH sing 86 n n 
C29 C16 EYH sing 87 n n 
O37 C32 EYH sing 88 n n 
N31 C32 EYH doub 89 n y 
N31 C30 EYH sing 90 n y 
C17 C16 EYH doub 91 n y 
C17 C18 EYH sing 92 n y 
C32 N33 EYH sing 93 n y 
C16 C14 EYH sing 94 n y 
N3 C1 EYH sing 95 n y 
N3 C8 EYH sing 96 n y 
C30 C7 EYH doub 97 n y 
N33 C34 EYH doub 98 n y 
C36 O35 EYH sing 99 n n 
CL3 C18 EYH sing 100 n n 
C7 C34 EYH sing 101 n y 
C7 C1 EYH sing 102 n n 
C34 O35 EYH sing 103 n n 
C18 C19 EYH doub 104 n y 
C14 C12 EYH sing 105 n n 
C14 C20 EYH doub 106 n y 
C12 C8 EYH sing 107 n n 
C12 N11 EYH sing 108 n n 
C1 N2 EYH doub 109 n y 
C8 C9 EYH doub 110 n y 
C19 C20 EYH sing 111 n y 
C26 C21 EYH sing 112 n n 
N2 C9 EYH sing 113 n y 
C9 C10 EYH sing 114 n n 
N11 C15 EYH sing 115 n n 
N11 C10 EYH sing 116 n n 
C21 C15 EYH doub 117 n y 
C21 C22 EYH sing 118 n y 
C15 C25 EYH sing 119 n y 
C22 C23 EYH doub 120 n y 
C10 O13 EYH doub 121 n n 
C25 C24 EYH doub 122 n y 
C23 C24 EYH sing 123 n y 
C24 CL2 EYH sing 124 n n 
C12 H1 EYH sing 125 n n 
C17 H2 EYH sing 126 n n 
C19 H3 EYH sing 127 n n 
C20 H4 EYH sing 128 n n 
C22 H5 EYH sing 129 n n 
C23 H6 EYH sing 130 n n 
C25 H7 EYH sing 131 n n 
C26 H8 EYH sing 132 n n 
C26 H9 EYH sing 133 n n 
C26 H10 EYH sing 134 n n 
C29 H11 EYH sing 135 n n 
C29 H12 EYH sing 136 n n 
C29 H13 EYH sing 137 n n 
C30 H14 EYH sing 138 n n 
C4 H15 EYH sing 139 n n 
C5 H16 EYH sing 140 n n 
C5 H17 EYH sing 141 n n 
C5 H18 EYH sing 142 n n 
C6 H19 EYH sing 143 n n 
C6 H20 EYH sing 144 n n 
C6 H21 EYH sing 145 n n 
C36 H22 EYH sing 146 n n 
C36 H23 EYH sing 147 n n 
C36 H24 EYH sing 148 n n 
C38 H25 EYH sing 149 n n 
C38 H26 EYH sing 150 n n 
C38 H27 EYH sing 151 n n 
#
_atom_sites.entry_id                     6GGN 
_atom_sites.fract_transf_matrix[1][1]    0.017832 
_atom_sites.fract_transf_matrix[1][2]    0.010295 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02059 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009372 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EYH A 1 201 1 EYH LI1 . 
C 3 CL A 1 202 1 CL CL . 
D 4 HOH A 1 301 16 HOH HOH . 
D 4 HOH A 2 302 15 HOH HOH . 
D 4 HOH A 3 303 9 HOH HOH . 
D 4 HOH A 4 304 17 HOH HOH . 
D 4 HOH A 5 305 13 HOH HOH . 
D 4 HOH A 6 306 14 HOH HOH . 
D 4 HOH A 7 307 29 HOH HOH . 
D 4 HOH A 8 308 41 HOH HOH . 
D 4 HOH A 9 309 27 HOH HOH . 
D 4 HOH A 10 310 5 HOH HOH . 
D 4 HOH A 11 311 52 HOH HOH . 
D 4 HOH A 12 312 19 HOH HOH . 
D 4 HOH A 13 313 36 HOH HOH . 
D 4 HOH A 14 314 23 HOH HOH . 
D 4 HOH A 15 315 1 HOH HOH . 
D 4 HOH A 16 316 34 HOH HOH . 
D 4 HOH A 17 317 32 HOH HOH . 
D 4 HOH A 18 318 39 HOH HOH . 
D 4 HOH A 19 319 6 HOH HOH . 
D 4 HOH A 20 320 2 HOH HOH . 
D 4 HOH A 21 321 7 HOH HOH . 
D 4 HOH A 22 322 38 HOH HOH . 
D 4 HOH A 23 323 3 HOH HOH . 
D 4 HOH A 24 324 8 HOH HOH . 
D 4 HOH A 25 325 46 HOH HOH . 
D 4 HOH A 26 326 21 HOH HOH . 
D 4 HOH A 27 327 26 HOH HOH . 
D 4 HOH A 28 328 12 HOH HOH . 
D 4 HOH A 29 329 50 HOH HOH . 
D 4 HOH A 30 330 33 HOH HOH . 
D 4 HOH A 31 331 31 HOH HOH . 
D 4 HOH A 32 332 51 HOH HOH . 
D 4 HOH A 33 333 4 HOH HOH . 
D 4 HOH A 34 334 43 HOH HOH . 
D 4 HOH A 35 335 22 HOH HOH . 
D 4 HOH A 36 336 25 HOH HOH . 
D 4 HOH A 37 337 24 HOH HOH . 
D 4 HOH A 38 338 11 HOH HOH . 
D 4 HOH A 39 339 48 HOH HOH . 
D 4 HOH A 40 340 18 HOH HOH . 
D 4 HOH A 41 341 49 HOH HOH . 
D 4 HOH A 42 342 45 HOH HOH . 
D 4 HOH A 43 343 10 HOH HOH . 
D 4 HOH A 44 344 42 HOH HOH . 
D 4 HOH A 45 345 28 HOH HOH . 
D 4 HOH A 46 346 40 HOH HOH . 
D 4 HOH A 47 347 44 HOH HOH . 
D 4 HOH A 48 348 30 HOH HOH . 
D 4 HOH A 49 349 37 HOH HOH . 
D 4 HOH A 50 350 35 HOH HOH . 
D 4 HOH A 51 351 20 HOH HOH . 
D 4 HOH A 52 352 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EYH . . . B 2 -11.586 -10.763 -0.849 1 27.31 ? C1 EYH 201 A 1 
HETATM 2 C C12 EYH . . . B 2 -7.955 -10.612 -0.86 1 28.73 ? C12 EYH 201 A 1 
HETATM 3 C C14 EYH . . . B 2 -7.175 -11.944 -0.98 1 28.46 ? C14 EYH 201 A 1 
HETATM 4 C C15 EYH . . . B 2 -6.348 -9.738 0.932 1 30.34 ? C15 EYH 201 A 1 
HETATM 5 C C16 EYH . . . B 2 -6.018 -12.057 -1.782 1 28.28 ? C16 EYH 201 A 1 
HETATM 6 C C17 EYH . . . B 2 -5.331 -13.283 -1.838 1 27.54 ? C17 EYH 201 A 1 
HETATM 7 C C18 EYH . . . B 2 -5.77 -14.39 -1.099 1 27.67 ? C18 EYH 201 A 1 
HETATM 8 C C19 EYH . . . B 2 -6.911 -14.284 -0.299 1 27.75 ? C19 EYH 201 A 1 
HETATM 9 C C20 EYH . . . B 2 -7.601 -13.063 -0.234 1 28.72 ? C20 EYH 201 A 1 
HETATM 10 C C21 EYH . . . B 2 -5.901 -8.401 0.74 1 31.06 ? C21 EYH 201 A 1 
HETATM 11 C C22 EYH . . . B 2 -4.609 -8.014 1.124 1 31.61 ? C22 EYH 201 A 1 
HETATM 12 C C23 EYH . . . B 2 -3.745 -8.945 1.7 1 31.47 ? C23 EYH 201 A 1 
HETATM 13 C C24 EYH . . . B 2 -4.182 -10.262 1.888 1 31.1 ? C24 EYH 201 A 1 
HETATM 14 C C25 EYH . . . B 2 -5.473 -10.671 1.509 1 30.62 ? C25 EYH 201 A 1 
HETATM 15 C C26 EYH . . . B 2 -6.787 -7.313 0.109 1 31.84 ? C26 EYH 201 A 1 
HETATM 16 C C29 EYH . . . B 2 -5.454 -10.901 -2.63 1 28.07 ? C29 EYH 201 A 1 
HETATM 17 C C30 EYH . . . B 2 -13.866 -9.821 -1.542 1 27.94 ? C30 EYH 201 A 1 
HETATM 18 N N2 EYH . . . B 2 -11.276 -10.259 0.264 1 27.46 ? N2 EYH 201 A 1 
HETATM 19 N N3 EYH . . . B 2 -10.51 -11.014 -1.56 1 26.85 ? N3 EYH 201 A 1 
HETATM 20 C C4 EYH . . . B 2 -10.522 -11.593 -2.917 1 26.33 ? C4 EYH 201 A 1 
HETATM 21 C C5 EYH . . . B 2 -9.715 -10.872 -4.039 1 26.62 ? C5 EYH 201 A 1 
HETATM 22 C C6 EYH . . . B 2 -10.153 -13.102 -2.861 1 25.19 ? C6 EYH 201 A 1 
HETATM 23 C C7 EYH . . . B 2 -13.059 -10.914 -1.17 1 27.15 ? C7 EYH 201 A 1 
HETATM 24 C C8 EYH . . . B 2 -9.463 -10.663 -0.827 1 27.8 ? C8 EYH 201 A 1 
HETATM 25 C C9 EYH . . . B 2 -9.862 -10.169 0.344 1 27.87 ? C9 EYH 201 A 1 
HETATM 26 C C10 EYH . . . B 2 -8.777 -9.76 1.212 1 28.43 ? C10 EYH 201 A 1 
HETATM 27 N N11 EYH . . . B 2 -7.676 -10.044 0.492 1 29.45 ? N11 EYH 201 A 1 
HETATM 28 O O13 EYH . . . B 2 -8.882 -9.288 2.326 1 29 ? O13 EYH 201 A 1 
HETATM 29 CL CL2 EYH . . . B 2 -3.07 -11.389 2.608 1 30.5 ? CL2 EYH 201 A 1 
HETATM 30 CL CL3 EYH . . . B 2 -4.894 -15.908 -1.172 1 27.22 ? CL3 EYH 201 A 1 
HETATM 31 N N31 EYH . . . B 2 -15.168 -9.966 -1.841 1 28.32 ? N31 EYH 201 A 1 
HETATM 32 C C32 EYH . . . B 2 -15.745 -11.183 -1.809 1 28.25 ? C32 EYH 201 A 1 
HETATM 33 N N33 EYH . . . B 2 -15.002 -12.268 -1.47 1 27.08 ? N33 EYH 201 A 1 
HETATM 34 C C34 EYH . . . B 2 -13.684 -12.172 -1.161 1 27.27 ? C34 EYH 201 A 1 
HETATM 35 O O35 EYH . . . B 2 -12.949 -13.315 -0.807 1 26.26 ? O35 EYH 201 A 1 
HETATM 36 C C36 EYH . . . B 2 -13.368 -14.617 -1.232 1 26.71 ? C36 EYH 201 A 1 
HETATM 37 O O37 EYH . . . B 2 -17.1 -11.31 -2.124 1 28.95 ? O37 EYH 201 A 1 
HETATM 38 C C38 EYH . . . B 2 -17.542 -12.577 -2.631 1 29.22 ? C38 EYH 201 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           38 
#