data_6GGU
#
_model_server_result.job_id            Y-d_GO6kW-ROa7RgkoBJUw 
_model_server_result.datetime_utc      '2024-11-07 12:56:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ggu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":405}' 
#
_entry.id    6GGU 
#
_exptl.entry_id    6GGU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              686.323 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'iron-guanylyl pyridinol cofactor' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6GGU 
_cell.length_a            144.06 
_cell.length_b            144.06 
_cell.length_c            95.06 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GGU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 72.03 -124.75962 0 
3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 144.06 0 0 
4 'crystal symmetry operation' 10_554 -y,-x,-z-1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -47.53 
5 'crystal symmetry operation' 11_654 -x+y+1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 144.06 0 -47.53 
6 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 72.03 -124.75962 -47.53 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 172 A CYS 172 1_555 F FE FE9 . A FE9 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? 
metalc ? metalc2 A OD2 ASP 189 A ASP 189 1_555 F FE FE9 . A FE9 405 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
#
_chem_comp.formula           'C21 H23 Fe N6 O13 P S 4' 
_chem_comp.formula_weight    686.323 
_chem_comp.id                FE9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'iron-guanylyl pyridinol cofactor' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2' C2' FE9 sing 83 n n 
O6A C6A FE9 doub 84 n n 
C6A N1A FE9 sing 85 n n 
C6A C5A FE9 sing 86 n n 
N1A C2A FE9 sing 87 n n 
N7A C5A FE9 sing 88 n y 
N7A C8A FE9 doub 89 n y 
C5A C4A FE9 doub 90 n y 
C8A N9A FE9 sing 91 n y 
C2A N2A FE9 sing 92 n n 
C2A N3A FE9 doub 93 n n 
C2' C1' FE9 sing 94 n n 
C2' C3' FE9 sing 95 n n 
C4A N3A FE9 sing 96 n n 
C4A N9A FE9 sing 97 n y 
N9A C1' FE9 sing 98 n n 
O3' C3' FE9 sing 99 n n 
C1' O4' FE9 sing 100 n n 
C3' C4' FE9 sing 101 n n 
O4' C4' FE9 sing 102 n n 
C4' C5' FE9 sing 103 n n 
O1P P1 FE9 doub 104 n n 
C5' O5' FE9 sing 105 n n 
O5' P1 FE9 sing 106 n n 
P1 O2P FE9 sing 107 n n 
P1 O3P FE9 sing 108 n n 
O3P C4 FE9 sing 109 n n 
C3M C3 FE9 sing 110 n n 
C4 C3 FE9 doub 111 n n 
C4 C5 FE9 sing 112 n n 
C5M C5 FE9 sing 113 n n 
C3 C2 FE9 sing 114 n n 
C5 C6 FE9 doub 115 n n 
C2 O2 FE9 doub 116 n n 
C2 N1 FE9 sing 117 n n 
C6 N1 FE9 sing 118 n n 
C6 C7 FE9 sing 119 n n 
N1 FE FE9 sing 120 n n 
O1F C1F FE9 trip 121 n n 
C7 C8 FE9 sing 122 n n 
C1F FE FE9 sing 123 n n 
C8 FE FE9 sing 124 n n 
C8 O18 FE9 doub 125 n n 
FE C2F FE9 sing 126 n n 
C2F O2F FE9 trip 127 n n 
C7 H8 FE9 sing 128 n n 
C5M H9 FE9 sing 129 n n 
C5M H10 FE9 sing 130 n n 
C5M H11 FE9 sing 131 n n 
C3M H12 FE9 sing 132 n n 
C3M H13 FE9 sing 133 n n 
C3M H14 FE9 sing 134 n n 
O2P H15 FE9 sing 135 n n 
C5' H16 FE9 sing 136 n n 
C5' H17 FE9 sing 137 n n 
C4' H18 FE9 sing 138 n n 
C1' H19 FE9 sing 139 n n 
C2' H20 FE9 sing 140 n n 
O2' H21 FE9 sing 141 n n 
C3' H22 FE9 sing 142 n n 
O3' H23 FE9 sing 143 n n 
N2A H24 FE9 sing 144 n n 
N2A H25 FE9 sing 145 n n 
N1A H26 FE9 sing 146 n n 
C8A H27 FE9 sing 147 n n 
C7 H1 FE9 sing 148 n n 
FE O1 FE9 sing 149 n n 
FE S1 FE9 sing 150 n n 
S1 HS1 FE9 sing 151 n n 
O1 H2 FE9 sing 152 n n 
#
_atom_sites.entry_id                     6GGU 
_atom_sites.fract_transf_matrix[1][1]    0.006942 
_atom_sites.fract_transf_matrix[1][2]    0.004008 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008015 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01052 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MES A 1 401 1 MES MES . 
C 3 SO4 A 1 402 1 SO4 SO4 . 
D 3 SO4 A 1 403 2 SO4 SO4 . 
E 3 SO4 A 1 404 3 SO4 SO4 . 
F 4 FE9 A 1 405 1 FE9 FE9 . 
G 5 GOL A 1 406 1 GOL GOL . 
H 5 GOL A 1 407 2 GOL GOL . 
I 5 GOL A 1 408 3 GOL GOL . 
J 5 GOL A 1 409 4 GOL GOL . 
K 5 GOL A 1 410 5 GOL GOL . 
L 6 HOH A 1 501 13 HOH HOH . 
L 6 HOH A 2 502 12 HOH HOH . 
L 6 HOH A 3 503 59 HOH HOH . 
L 6 HOH A 4 504 58 HOH HOH . 
L 6 HOH A 5 505 39 HOH HOH . 
L 6 HOH A 6 506 35 HOH HOH . 
L 6 HOH A 7 507 36 HOH HOH . 
L 6 HOH A 8 508 20 HOH HOH . 
L 6 HOH A 9 509 3 HOH HOH . 
L 6 HOH A 10 510 1 HOH HOH . 
L 6 HOH A 11 511 2 HOH HOH . 
L 6 HOH A 12 512 6 HOH HOH . 
L 6 HOH A 13 513 11 HOH HOH . 
L 6 HOH A 14 514 55 HOH HOH . 
L 6 HOH A 15 515 45 HOH HOH . 
L 6 HOH A 16 516 23 HOH HOH . 
L 6 HOH A 17 517 57 HOH HOH . 
L 6 HOH A 18 518 27 HOH HOH . 
L 6 HOH A 19 519 31 HOH HOH . 
L 6 HOH A 20 520 18 HOH HOH . 
L 6 HOH A 21 521 26 HOH HOH . 
L 6 HOH A 22 522 22 HOH HOH . 
L 6 HOH A 23 523 25 HOH HOH . 
L 6 HOH A 24 524 7 HOH HOH . 
L 6 HOH A 25 525 38 HOH HOH . 
L 6 HOH A 26 526 9 HOH HOH . 
L 6 HOH A 27 527 28 HOH HOH . 
L 6 HOH A 28 528 21 HOH HOH . 
L 6 HOH A 29 529 8 HOH HOH . 
L 6 HOH A 30 530 19 HOH HOH . 
L 6 HOH A 31 531 33 HOH HOH . 
L 6 HOH A 32 532 32 HOH HOH . 
L 6 HOH A 33 533 52 HOH HOH . 
L 6 HOH A 34 534 14 HOH HOH . 
L 6 HOH A 35 535 40 HOH HOH . 
L 6 HOH A 36 536 34 HOH HOH . 
L 6 HOH A 37 537 42 HOH HOH . 
L 6 HOH A 38 538 50 HOH HOH . 
L 6 HOH A 39 539 29 HOH HOH . 
L 6 HOH A 40 540 24 HOH HOH . 
L 6 HOH A 41 541 5 HOH HOH . 
L 6 HOH A 42 542 15 HOH HOH . 
L 6 HOH A 43 543 53 HOH HOH . 
L 6 HOH A 44 544 41 HOH HOH . 
L 6 HOH A 45 545 16 HOH HOH . 
L 6 HOH A 46 546 56 HOH HOH . 
L 6 HOH A 47 547 46 HOH HOH . 
L 6 HOH A 48 548 47 HOH HOH . 
L 6 HOH A 49 549 30 HOH HOH . 
L 6 HOH A 50 550 44 HOH HOH . 
L 6 HOH A 51 551 51 HOH HOH . 
L 6 HOH A 52 552 54 HOH HOH . 
L 6 HOH A 53 553 37 HOH HOH . 
L 6 HOH A 54 554 48 HOH HOH . 
L 6 HOH A 55 555 49 HOH HOH . 
L 6 HOH A 56 556 4 HOH HOH . 
L 6 HOH A 57 557 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 FE9 . . . F 4 67.865 -19.965 3.287 1 28.74 ? O2 FE9 405 A 1 
HETATM 2 FE FE FE9 . . . F 4 65.663 -20.533 1.202 1 29.49 ? FE FE9 405 A 1 
HETATM 3 C C1F FE9 . . . F 4 64.963 -19.141 2.176 1 34.06 ? C1F FE9 405 A 1 
HETATM 4 O O1F FE9 . . . F 4 64.555 -18.264 2.772 1 31.29 ? O1F FE9 405 A 1 
HETATM 5 C C2F FE9 . . . F 4 64.989 -19.794 -0.313 1 30.43 ? C2F FE9 405 A 1 
HETATM 6 O O2F FE9 . . . F 4 64.522 -19.363 -1.235 1 34.92 ? O2F FE9 405 A 1 
HETATM 7 C C8 FE9 . . . F 4 64.172 -21.726 1.248 1 30.25 ? C8 FE9 405 A 1 
HETATM 8 O O18 FE9 . . . F 4 63.294 -21.659 0.4 1 30.98 ? O18 FE9 405 A 1 
HETATM 9 C C7 FE9 . . . F 4 64.149 -22.78 2.342 1 27.58 ? C7 FE9 405 A 1 
HETATM 10 C C6 FE9 . . . F 4 65.254 -22.408 3.292 1 25.25 ? C6 FE9 405 A 1 
HETATM 11 N N1 FE9 . . . F 4 66.111 -21.36 2.889 1 24.89 ? N1 FE9 405 A 1 
HETATM 12 C C5 FE9 . . . F 4 65.463 -23.127 4.568 1 25.18 ? C5 FE9 405 A 1 
HETATM 13 C C5M FE9 . . . F 4 64.558 -24.258 4.977 1 19.26 ? C5M FE9 405 A 1 
HETATM 14 C C4 FE9 . . . F 4 66.593 -22.679 5.426 1 27.7 ? C4 FE9 405 A 1 
HETATM 15 C C3 FE9 . . . F 4 67.466 -21.57 4.978 1 25.37 ? C3 FE9 405 A 1 
HETATM 16 C C3M FE9 . . . F 4 68.608 -21.118 5.85 1 27.65 ? C3M FE9 405 A 1 
HETATM 17 C C2 FE9 . . . F 4 67.172 -20.911 3.685 1 23.5 ? C2 FE9 405 A 1 
HETATM 18 O O3P FE9 . . . F 4 66.891 -23.335 6.572 1 27.47 ? O3P FE9 405 A 1 
HETATM 19 P P1 FE9 . . . F 4 66.374 -22.854 7.981 1 32.15 ? P1 FE9 405 A 1 
HETATM 20 O O1P FE9 . . . F 4 67.506 -23.048 8.922 1 33.03 ? O1P FE9 405 A 1 
HETATM 21 O O2P FE9 . . . F 4 65.899 -21.332 7.892 1 31.34 ? O2P FE9 405 A 1 
HETATM 22 O O5' FE9 . . . F 4 65.121 -23.76 8.399 1 33.29 ? O5' FE9 405 A 1 
HETATM 23 C C5' FE9 . . . F 4 65.27 -25.116 8.801 1 33.82 ? C5' FE9 405 A 1 
HETATM 24 C C4' FE9 . . . F 4 64.24 -25.356 9.891 1 35.76 ? C4' FE9 405 A 1 
HETATM 25 O O4' FE9 . . . F 4 63.865 -26.744 9.956 1 36.63 ? O4' FE9 405 A 1 
HETATM 26 C C1' FE9 . . . F 4 63.909 -27.117 11.33 1 35.93 ? C1' FE9 405 A 1 
HETATM 27 C C2' FE9 . . . F 4 65.055 -26.31 11.895 1 36.99 ? C2' FE9 405 A 1 
HETATM 28 O O2' FE9 . . . F 4 65.059 -26.25 13.317 1 40.09 ? O2' FE9 405 A 1 
HETATM 29 C C3' FE9 . . . F 4 64.801 -24.959 11.25 1 35.84 ? C3' FE9 405 A 1 
HETATM 30 O O3' FE9 . . . F 4 63.837 -24.154 11.957 1 30.46 ? O3' FE9 405 A 1 
HETATM 31 N N9A FE9 . . . F 4 63.999 -28.572 11.584 1 38.26 ? N9A FE9 405 A 1 
HETATM 32 C C4A FE9 . . . F 4 62.898 -29.281 11.777 1 35.78 ? C4A FE9 405 A 1 
HETATM 33 N N3A FE9 . . . F 4 61.586 -28.969 11.743 1 33.31 ? N3A FE9 405 A 1 
HETATM 34 C C2A FE9 . . . F 4 60.648 -29.907 11.973 1 32.93 ? C2A FE9 405 A 1 
HETATM 35 N N2A FE9 . . . F 4 59.369 -29.489 11.904 1 31.53 ? N2A FE9 405 A 1 
HETATM 36 N N1A FE9 . . . F 4 60.958 -31.198 12.225 1 35.77 ? N1A FE9 405 A 1 
HETATM 37 C C6A FE9 . . . F 4 62.235 -31.633 12.287 1 38.53 ? C6A FE9 405 A 1 
HETATM 38 O O6A FE9 . . . F 4 62.521 -32.822 12.547 1 42.95 ? O6A FE9 405 A 1 
HETATM 39 C C5A FE9 . . . F 4 63.319 -30.653 12.06 1 35.13 ? C5A FE9 405 A 1 
HETATM 40 N N7A FE9 . . . F 4 64.664 -30.654 12.035 1 35.49 ? N7A FE9 405 A 1 
HETATM 41 C C8A FE9 . . . F 4 65.073 -29.379 11.759 1 36.37 ? C8A FE9 405 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          23 
_model_server_stats.element_count           41 
#