data_6GGU
#
_model_server_result.job_id            qnxz1E_T_EGDXafzyg9hWw 
_model_server_result.datetime_utc      '2024-11-24 18:59:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ggu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":410}' 
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_entry.id    6GGU 
#
_exptl.entry_id    6GGU 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6GGU 
_cell.length_a            144.06 
_cell.length_b            144.06 
_cell.length_c            95.06 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GGU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63 2 2' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 72.03 -124.75962 0 
3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 144.06 0 0 
4 'crystal symmetry operation' 10_554 -y,-x,-z-1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -47.53 
5 'crystal symmetry operation' 11_654 -x+y+1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 144.06 0 -47.53 
6 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 72.03 -124.75962 -47.53 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 172 A CYS 172 1_555 F FE FE9 . A FE9 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? 
metalc ? metalc2 A OD2 ASP 189 A ASP 189 1_555 F FE FE9 . A FE9 405 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 199 n n 
C1 C2 GOL sing 200 n n 
C1 H11 GOL sing 201 n n 
C1 H12 GOL sing 202 n n 
O1 HO1 GOL sing 203 n n 
C2 O2 GOL sing 204 n n 
C2 C3 GOL sing 205 n n 
C2 H2 GOL sing 206 n n 
O2 HO2 GOL sing 207 n n 
C3 O3 GOL sing 208 n n 
C3 H31 GOL sing 209 n n 
C3 H32 GOL sing 210 n n 
O3 HO3 GOL sing 211 n n 
#
_atom_sites.entry_id                     6GGU 
_atom_sites.fract_transf_matrix[1][1]    0.006942 
_atom_sites.fract_transf_matrix[1][2]    0.004008 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008015 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01052 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MES A 1 401 1 MES MES . 
C 3 SO4 A 1 402 1 SO4 SO4 . 
D 3 SO4 A 1 403 2 SO4 SO4 . 
E 3 SO4 A 1 404 3 SO4 SO4 . 
F 4 FE9 A 1 405 1 FE9 FE9 . 
G 5 GOL A 1 406 1 GOL GOL . 
H 5 GOL A 1 407 2 GOL GOL . 
I 5 GOL A 1 408 3 GOL GOL . 
J 5 GOL A 1 409 4 GOL GOL . 
K 5 GOL A 1 410 5 GOL GOL . 
L 6 HOH A 1 501 13 HOH HOH . 
L 6 HOH A 2 502 12 HOH HOH . 
L 6 HOH A 3 503 59 HOH HOH . 
L 6 HOH A 4 504 58 HOH HOH . 
L 6 HOH A 5 505 39 HOH HOH . 
L 6 HOH A 6 506 35 HOH HOH . 
L 6 HOH A 7 507 36 HOH HOH . 
L 6 HOH A 8 508 20 HOH HOH . 
L 6 HOH A 9 509 3 HOH HOH . 
L 6 HOH A 10 510 1 HOH HOH . 
L 6 HOH A 11 511 2 HOH HOH . 
L 6 HOH A 12 512 6 HOH HOH . 
L 6 HOH A 13 513 11 HOH HOH . 
L 6 HOH A 14 514 55 HOH HOH . 
L 6 HOH A 15 515 45 HOH HOH . 
L 6 HOH A 16 516 23 HOH HOH . 
L 6 HOH A 17 517 57 HOH HOH . 
L 6 HOH A 18 518 27 HOH HOH . 
L 6 HOH A 19 519 31 HOH HOH . 
L 6 HOH A 20 520 18 HOH HOH . 
L 6 HOH A 21 521 26 HOH HOH . 
L 6 HOH A 22 522 22 HOH HOH . 
L 6 HOH A 23 523 25 HOH HOH . 
L 6 HOH A 24 524 7 HOH HOH . 
L 6 HOH A 25 525 38 HOH HOH . 
L 6 HOH A 26 526 9 HOH HOH . 
L 6 HOH A 27 527 28 HOH HOH . 
L 6 HOH A 28 528 21 HOH HOH . 
L 6 HOH A 29 529 8 HOH HOH . 
L 6 HOH A 30 530 19 HOH HOH . 
L 6 HOH A 31 531 33 HOH HOH . 
L 6 HOH A 32 532 32 HOH HOH . 
L 6 HOH A 33 533 52 HOH HOH . 
L 6 HOH A 34 534 14 HOH HOH . 
L 6 HOH A 35 535 40 HOH HOH . 
L 6 HOH A 36 536 34 HOH HOH . 
L 6 HOH A 37 537 42 HOH HOH . 
L 6 HOH A 38 538 50 HOH HOH . 
L 6 HOH A 39 539 29 HOH HOH . 
L 6 HOH A 40 540 24 HOH HOH . 
L 6 HOH A 41 541 5 HOH HOH . 
L 6 HOH A 42 542 15 HOH HOH . 
L 6 HOH A 43 543 53 HOH HOH . 
L 6 HOH A 44 544 41 HOH HOH . 
L 6 HOH A 45 545 16 HOH HOH . 
L 6 HOH A 46 546 56 HOH HOH . 
L 6 HOH A 47 547 46 HOH HOH . 
L 6 HOH A 48 548 47 HOH HOH . 
L 6 HOH A 49 549 30 HOH HOH . 
L 6 HOH A 50 550 44 HOH HOH . 
L 6 HOH A 51 551 51 HOH HOH . 
L 6 HOH A 52 552 54 HOH HOH . 
L 6 HOH A 53 553 37 HOH HOH . 
L 6 HOH A 54 554 48 HOH HOH . 
L 6 HOH A 55 555 49 HOH HOH . 
L 6 HOH A 56 556 4 HOH HOH . 
L 6 HOH A 57 557 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 5 63.57 -6.68 -38.807 0.5 27.14 ? C1 GOL 410 A 1 
HETATM 2 O O1 GOL . . . K 5 62.497 -6.681 -39.743 0.5 28.94 ? O1 GOL 410 A 1 
HETATM 3 C C2 GOL . . . K 5 64.268 -5.34 -38.783 0.5 29.35 ? C2 GOL 410 A 1 
HETATM 4 O O2 GOL . . . K 5 63.287 -4.297 -38.726 0.5 33.43 ? O2 GOL 410 A 1 
HETATM 5 C C3 GOL . . . K 5 65.23 -5.198 -37.624 0.5 27.95 ? C3 GOL 410 A 1 
HETATM 6 O O3 GOL . . . K 5 64.536 -5.184 -36.383 0.5 28.87 ? O3 GOL 410 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           215 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#