data_6GH8
#
_model_server_result.job_id            Taz25aQ519IfR9BfBuvxpA 
_model_server_result.datetime_utc      '2024-11-05 00:30:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gh8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":201}' 
#
_entry.id    6GH8 
#
_exptl.entry_id    6GH8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6GH8 
_cell.length_a            141.808 
_cell.length_b            59.294 
_cell.length_c            83.567 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GH8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,J,K 1 1 
C,D,G,H,I,L,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 29 D CYS 89 1_555 A SG CYS 135 D CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf2 A SG CYS 51 D CYS 111 1_555 A SG CYS 85 D CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 B SG CYS 7 A CYS 28 1_555 B SG CYS 34 A CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf4 B SG CYS 62 A CYS 83 1_555 B SG CYS 84 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 C SG CYS 29 B CYS 89 1_555 C SG CYS 135 B CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf6 C SG CYS 51 B CYS 111 1_555 C SG CYS 85 B CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 D SG CYS 7 C CYS 28 1_555 D SG CYS 34 C CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf8 D SG CYS 62 C CYS 83 1_555 D SG CYS 84 C CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
covale ? covale1 A ND2 ASN 52 D ASN 112 1_555 E C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 C ND2 ASN 52 B ASN 112 1_555 G C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale3 C ND2 ASN 134 B ASN 194 1_555 H C1 NAG . B NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? 
metalc ? metalc1 B OE2 GLU 58 A GLU 79 1_555 F CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc2 B OD1 ASP 65 A ASP 86 1_555 F CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc3 B OD2 ASP 65 A ASP 86 1_555 F CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc4 B OD1 ASP 106 A ASP 127 1_555 F CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc5 B O ARG 109 A ARG 130 1_555 F CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc6 F CA CA . A CA 201 1_555 K O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc7 F CA CA . A CA 201 1_555 K O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? 
metalc ? metalc8 D OE1 GLU 58 C GLU 79 1_555 I CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc9 D OD1 ASP 65 C ASP 86 1_555 I CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? 
metalc ? metalc10 D OD2 ASP 65 C ASP 86 1_555 I CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? 
metalc ? metalc11 D OD2 ASP 106 C ASP 127 1_555 I CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? 
metalc ? metalc12 D O ARG 109 C ARG 130 1_555 I CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6GH8 
_atom_sites.fract_transf_matrix[1][1]    0.007052 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016865 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011966 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAG D 1 201 2 NAG NAG . 
F 4 CA A 1 201 1 CA CA . 
G 3 NAG B 1 201 1 NAG NAG . 
H 3 NAG B 1 202 3 NAG NAG . 
I 4 CA C 1 201 2 CA CA . 
J 5 HOH D 1 301 2 HOH HOH . 
J 5 HOH D 2 302 35 HOH HOH . 
J 5 HOH D 3 303 4 HOH HOH . 
J 5 HOH D 4 304 7 HOH HOH . 
J 5 HOH D 5 305 3 HOH HOH . 
J 5 HOH D 6 306 41 HOH HOH . 
J 5 HOH D 7 307 42 HOH HOH . 
J 5 HOH D 8 308 27 HOH HOH . 
J 5 HOH D 9 309 32 HOH HOH . 
J 5 HOH D 10 310 28 HOH HOH . 
J 5 HOH D 11 311 29 HOH HOH . 
K 5 HOH A 1 301 6 HOH HOH . 
K 5 HOH A 2 302 40 HOH HOH . 
K 5 HOH A 3 303 9 HOH HOH . 
K 5 HOH A 4 304 10 HOH HOH . 
K 5 HOH A 5 305 8 HOH HOH . 
K 5 HOH A 6 306 34 HOH HOH . 
K 5 HOH A 7 307 5 HOH HOH . 
K 5 HOH A 8 308 1 HOH HOH . 
K 5 HOH A 9 309 26 HOH HOH . 
L 5 HOH B 1 301 18 HOH HOH . 
L 5 HOH B 2 302 13 HOH HOH . 
L 5 HOH B 3 303 38 HOH HOH . 
L 5 HOH B 4 304 22 HOH HOH . 
M 5 HOH C 1 301 24 HOH HOH . 
M 5 HOH C 2 302 20 HOH HOH . 
M 5 HOH C 3 303 30 HOH HOH . 
M 5 HOH C 4 304 39 HOH HOH . 
M 5 HOH C 5 305 23 HOH HOH . 
M 5 HOH C 6 306 12 HOH HOH . 
M 5 HOH C 7 307 15 HOH HOH . 
M 5 HOH C 8 308 14 HOH HOH . 
M 5 HOH C 9 309 11 HOH HOH . 
M 5 HOH C 10 310 19 HOH HOH . 
M 5 HOH C 11 311 31 HOH HOH . 
M 5 HOH C 12 312 16 HOH HOH . 
M 5 HOH C 13 313 21 HOH HOH . 
M 5 HOH C 14 314 33 HOH HOH . 
M 5 HOH C 15 315 37 HOH HOH . 
M 5 HOH C 16 316 36 HOH HOH . 
M 5 HOH C 17 317 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . G 3 26.718 6.714 60.14 1 73.68 ? C1 NAG 201 B 1 
HETATM 2 C C2 NAG . . . G 3 27.415 6.436 58.802 1 81.61 ? C2 NAG 201 B 1 
HETATM 3 C C3 NAG . . . G 3 27.75 4.952 58.674 1 85.53 ? C3 NAG 201 B 1 
HETATM 4 C C4 NAG . . . G 3 28.556 4.484 59.877 1 88.16 ? C4 NAG 201 B 1 
HETATM 5 C C5 NAG . . . G 3 27.789 4.79 61.157 1 87.13 ? C5 NAG 201 B 1 
HETATM 6 C C6 NAG . . . G 3 28.555 4.425 62.407 1 91.12 ? C6 NAG 201 B 1 
HETATM 7 C C7 NAG . . . G 3 26.793 8.016 57.025 1 87.56 ? C7 NAG 201 B 1 
HETATM 8 C C8 NAG . . . G 3 25.852 8.296 55.893 1 88.9 ? C8 NAG 201 B 1 
HETATM 9 N N2 NAG . . . G 3 26.593 6.869 57.683 1 85.25 ? N2 NAG 201 B 1 
HETATM 10 O O3 NAG . . . G 3 28.488 4.73 57.478 1 86.89 ? O3 NAG 201 B 1 
HETATM 11 O O4 NAG . . . G 3 28.808 3.086 59.793 1 90.14 ? O4 NAG 201 B 1 
HETATM 12 O O5 NAG . . . G 3 27.525 6.199 61.229 1 80.39 ? O5 NAG 201 B 1 
HETATM 13 O O6 NAG . . . G 3 27.937 4.958 63.57 1 92.68 ? O6 NAG 201 B 1 
HETATM 14 O O7 NAG . . . G 3 27.692 8.794 57.33 1 84.73 ? O7 NAG 201 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#