data_6GH8 # _model_server_result.job_id 9L9nknyguyv992tbUs1JFg _model_server_result.datetime_utc '2024-11-05 00:27:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gh8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":201}' # _entry.id 6GH8 # _exptl.entry_id 6GH8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GH8 _cell.length_a 141.808 _cell.length_b 59.294 _cell.length_c 83.567 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GH8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,J,K 1 1 C,D,G,H,I,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 D CYS 89 1_555 A SG CYS 135 D CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 51 D CYS 111 1_555 A SG CYS 85 D CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 B SG CYS 7 A CYS 28 1_555 B SG CYS 34 A CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 B SG CYS 62 A CYS 83 1_555 B SG CYS 84 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 C SG CYS 29 B CYS 89 1_555 C SG CYS 135 B CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf6 C SG CYS 51 B CYS 111 1_555 C SG CYS 85 B CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 D SG CYS 7 C CYS 28 1_555 D SG CYS 34 C CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf8 D SG CYS 62 C CYS 83 1_555 D SG CYS 84 C CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 52 D ASN 112 1_555 E C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 C ND2 ASN 52 B ASN 112 1_555 G C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 C ND2 ASN 134 B ASN 194 1_555 H C1 NAG . B NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? metalc ? metalc1 B OE2 GLU 58 A GLU 79 1_555 F CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc2 B OD1 ASP 65 A ASP 86 1_555 F CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc3 B OD2 ASP 65 A ASP 86 1_555 F CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc4 B OD1 ASP 106 A ASP 127 1_555 F CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc5 B O ARG 109 A ARG 130 1_555 F CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc6 F CA CA . A CA 201 1_555 K O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc7 F CA CA . A CA 201 1_555 K O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc8 D OE1 GLU 58 C GLU 79 1_555 I CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc9 D OD1 ASP 65 C ASP 86 1_555 I CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc10 D OD2 ASP 65 C ASP 86 1_555 I CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc11 D OD2 ASP 106 C ASP 127 1_555 I CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc12 D O ARG 109 C ARG 130 1_555 I CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6GH8 _atom_sites.fract_transf_matrix[1][1] 0.007052 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016865 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG D 1 201 2 NAG NAG . F 4 CA A 1 201 1 CA CA . G 3 NAG B 1 201 1 NAG NAG . H 3 NAG B 1 202 3 NAG NAG . I 4 CA C 1 201 2 CA CA . J 5 HOH D 1 301 2 HOH HOH . J 5 HOH D 2 302 35 HOH HOH . J 5 HOH D 3 303 4 HOH HOH . J 5 HOH D 4 304 7 HOH HOH . J 5 HOH D 5 305 3 HOH HOH . J 5 HOH D 6 306 41 HOH HOH . J 5 HOH D 7 307 42 HOH HOH . J 5 HOH D 8 308 27 HOH HOH . J 5 HOH D 9 309 32 HOH HOH . J 5 HOH D 10 310 28 HOH HOH . J 5 HOH D 11 311 29 HOH HOH . K 5 HOH A 1 301 6 HOH HOH . K 5 HOH A 2 302 40 HOH HOH . K 5 HOH A 3 303 9 HOH HOH . K 5 HOH A 4 304 10 HOH HOH . K 5 HOH A 5 305 8 HOH HOH . K 5 HOH A 6 306 34 HOH HOH . K 5 HOH A 7 307 5 HOH HOH . K 5 HOH A 8 308 1 HOH HOH . K 5 HOH A 9 309 26 HOH HOH . L 5 HOH B 1 301 18 HOH HOH . L 5 HOH B 2 302 13 HOH HOH . L 5 HOH B 3 303 38 HOH HOH . L 5 HOH B 4 304 22 HOH HOH . M 5 HOH C 1 301 24 HOH HOH . M 5 HOH C 2 302 20 HOH HOH . M 5 HOH C 3 303 30 HOH HOH . M 5 HOH C 4 304 39 HOH HOH . M 5 HOH C 5 305 23 HOH HOH . M 5 HOH C 6 306 12 HOH HOH . M 5 HOH C 7 307 15 HOH HOH . M 5 HOH C 8 308 14 HOH HOH . M 5 HOH C 9 309 11 HOH HOH . M 5 HOH C 10 310 19 HOH HOH . M 5 HOH C 11 311 31 HOH HOH . M 5 HOH C 12 312 16 HOH HOH . M 5 HOH C 13 313 21 HOH HOH . M 5 HOH C 14 314 33 HOH HOH . M 5 HOH C 15 315 37 HOH HOH . M 5 HOH C 16 316 36 HOH HOH . M 5 HOH C 17 317 25 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 4 _atom_site.Cartn_x 17.054 _atom_site.Cartn_y 10.619 _atom_site.Cartn_z 52.523 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #