data_6GH9 # _model_server_result.job_id oUC-bLguxKK1hXNwjuFNVQ _model_server_result.datetime_utc '2024-11-04 22:22:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gh9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1003}' # _entry.id 6GH9 # _exptl.entry_id 6GH9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 444.481 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL)AMINO]ETHYL}AMINO)-9,10-ANTHRACENEDIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.08 _cell.angle_gamma 90 _cell.entry_id 6GH9 _cell.length_a 62.07 _cell.length_b 94.39 _cell.length_c 63.29 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GH9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F 1 1 B,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 166 A CYS 419 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc2 A SG CYS 169 A CYS 422 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc3 A SG CYS 215 A CYS 780 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc4 A SG CYS 218 A CYS 783 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? # _chem_comp.formula 'C22 H28 N4 O6' _chem_comp.formula_weight 444.481 _chem_comp.id MIX _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL)AMINO]ETHYL}AMINO)-9,10-ANTHRACENEDIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MITOXANTRONE;1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL)AMINO]ETHYL}AMINO)ANTHRA-9,10-QUINONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAC CAK MIX sing 246 n n OAC HAC MIX sing 247 n n CAK CAM MIX sing 248 n n CAK HAK1 MIX sing 249 n n CAK HAK2 MIX sing 250 n n CAM NAS MIX sing 251 n n CAM HAM1 MIX sing 252 n n CAM HAM2 MIX sing 253 n n NAS CAO MIX sing 254 n n NAS HAS MIX sing 255 n n CAO CAQ MIX sing 256 n n CAO HAO1 MIX sing 257 n n CAO HAO2 MIX sing 258 n n CAQ NAU MIX sing 259 n n CAQ HAQ1 MIX sing 260 n n CAQ HAQ2 MIX sing 261 n n NAU CAY MIX sing 262 n n NAU HAU MIX sing 263 n n CAY CAI MIX doub 264 n y CAY CBE MIX sing 265 n y CAI CAJ MIX sing 266 n y CAI HAI MIX sing 267 n n CAJ CAZ MIX doub 268 n y CAJ HAJ MIX sing 269 n n CBE CBA MIX sing 270 n n CBE CBF MIX doub 271 n y CBA OAA MIX doub 272 n n CBA CBC MIX sing 273 n n CBC CAW MIX sing 274 n y CBC CBD MIX doub 275 n y CAW OAE MIX sing 276 n n CAW CAG MIX doub 277 n y OAE HAE MIX sing 278 n n CAG CAH MIX sing 279 n y CAG HAG MIX sing 280 n n CAH CAX MIX doub 281 n y CAH HAH MIX sing 282 n n CAX OAF MIX sing 283 n n CAX CBD MIX sing 284 n y OAF HAF MIX sing 285 n n CBD CBB MIX sing 286 n n CBB OAB MIX doub 287 n n CBB CBF MIX sing 288 n n CBF CAZ MIX sing 289 n y CAZ NAV MIX sing 290 n n NAV CAR MIX sing 291 n n NAV HAV MIX sing 292 n n CAR CAP MIX sing 293 n n CAR HAR1 MIX sing 294 n n CAR HAR2 MIX sing 295 n n CAP NAT MIX sing 296 n n CAP HAP1 MIX sing 297 n n CAP HAP2 MIX sing 298 n n NAT CAN MIX sing 299 n n NAT HAT MIX sing 300 n n CAN CAL MIX sing 301 n n CAN HAN1 MIX sing 302 n n CAN HAN2 MIX sing 303 n n CAL OAD MIX sing 304 n n CAL HAL1 MIX sing 305 n n CAL HAL2 MIX sing 306 n n OAD HAD MIX sing 307 n n # _atom_sites.entry_id 6GH9 _atom_sites.fract_transf_matrix[1][1] 0.016111 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000022 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0158 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1001 1 ZN ZN . D 3 DMS A 1 1002 2 DMS DMS . E 4 MIX A 1 1003 1 MIX MIX . F 5 HOH A 1 1101 114 HOH HOH . F 5 HOH A 2 1102 22 HOH HOH . F 5 HOH A 3 1103 124 HOH HOH . F 5 HOH A 4 1104 62 HOH HOH . F 5 HOH A 5 1105 35 HOH HOH . F 5 HOH A 6 1106 59 HOH HOH . F 5 HOH A 7 1107 138 HOH HOH . F 5 HOH A 8 1108 151 HOH HOH . F 5 HOH A 9 1109 5 HOH HOH . F 5 HOH A 10 1110 106 HOH HOH . F 5 HOH A 11 1111 127 HOH HOH . F 5 HOH A 12 1112 30 HOH HOH . F 5 HOH A 13 1113 60 HOH HOH . F 5 HOH A 14 1114 46 HOH HOH . F 5 HOH A 15 1115 7 HOH HOH . F 5 HOH A 16 1116 79 HOH HOH . F 5 HOH A 17 1117 92 HOH HOH . F 5 HOH A 18 1118 21 HOH HOH . F 5 HOH A 19 1119 55 HOH HOH . F 5 HOH A 20 1120 42 HOH HOH . F 5 HOH A 21 1121 4 HOH HOH . F 5 HOH A 22 1122 14 HOH HOH . F 5 HOH A 23 1123 56 HOH HOH . F 5 HOH A 24 1124 31 HOH HOH . F 5 HOH A 25 1125 57 HOH HOH . F 5 HOH A 26 1126 39 HOH HOH . F 5 HOH A 27 1127 95 HOH HOH . F 5 HOH A 28 1128 65 HOH HOH . F 5 HOH A 29 1129 12 HOH HOH . F 5 HOH A 30 1130 51 HOH HOH . F 5 HOH A 31 1131 119 HOH HOH . F 5 HOH A 32 1132 74 HOH HOH . F 5 HOH A 33 1133 43 HOH HOH . F 5 HOH A 34 1134 99 HOH HOH . F 5 HOH A 35 1135 41 HOH HOH . F 5 HOH A 36 1136 9 HOH HOH . F 5 HOH A 37 1137 20 HOH HOH . F 5 HOH A 38 1138 94 HOH HOH . F 5 HOH A 39 1139 97 HOH HOH . F 5 HOH A 40 1140 52 HOH HOH . F 5 HOH A 41 1141 49 HOH HOH . F 5 HOH A 42 1142 107 HOH HOH . F 5 HOH A 43 1143 58 HOH HOH . F 5 HOH A 44 1144 47 HOH HOH . F 5 HOH A 45 1145 68 HOH HOH . F 5 HOH A 46 1146 126 HOH HOH . F 5 HOH A 47 1147 152 HOH HOH . F 5 HOH A 48 1148 80 HOH HOH . F 5 HOH A 49 1149 149 HOH HOH . F 5 HOH A 50 1150 113 HOH HOH . F 5 HOH A 51 1151 150 HOH HOH . F 5 HOH A 52 1152 140 HOH HOH . F 5 HOH A 53 1153 145 HOH HOH . F 5 HOH A 54 1154 148 HOH HOH . F 5 HOH A 55 1155 25 HOH HOH . F 5 HOH A 56 1156 112 HOH HOH . F 5 HOH A 57 1157 110 HOH HOH . F 5 HOH A 58 1158 144 HOH HOH . F 5 HOH A 59 1159 125 HOH HOH . F 5 HOH A 60 1160 72 HOH HOH . F 5 HOH A 61 1161 63 HOH HOH . F 5 HOH A 62 1162 141 HOH HOH . F 5 HOH A 63 1163 85 HOH HOH . F 5 HOH A 64 1164 84 HOH HOH . F 5 HOH A 65 1165 142 HOH HOH . F 5 HOH A 66 1166 122 HOH HOH . F 5 HOH A 67 1167 86 HOH HOH . F 5 HOH A 68 1168 89 HOH HOH . F 5 HOH A 69 1169 147 HOH HOH . F 5 HOH A 70 1170 143 HOH HOH . F 5 HOH A 71 1171 146 HOH HOH . F 5 HOH A 72 1172 130 HOH HOH . F 5 HOH A 73 1173 136 HOH HOH . F 5 HOH A 74 1174 139 HOH HOH . F 5 HOH A 75 1175 128 HOH HOH . F 5 HOH A 76 1176 153 HOH HOH . F 5 HOH A 77 1177 75 HOH HOH . F 5 HOH A 78 1178 96 HOH HOH . F 5 HOH A 79 1179 103 HOH HOH . G 5 HOH B 1 1001 129 HOH HOH . G 5 HOH B 2 1002 83 HOH HOH . G 5 HOH B 3 1003 53 HOH HOH . G 5 HOH B 4 1004 19 HOH HOH . G 5 HOH B 5 1005 32 HOH HOH . G 5 HOH B 6 1006 135 HOH HOH . G 5 HOH B 7 1007 18 HOH HOH . G 5 HOH B 8 1008 64 HOH HOH . G 5 HOH B 9 1009 54 HOH HOH . G 5 HOH B 10 1010 15 HOH HOH . G 5 HOH B 11 1011 29 HOH HOH . G 5 HOH B 12 1012 2 HOH HOH . G 5 HOH B 13 1013 61 HOH HOH . G 5 HOH B 14 1014 8 HOH HOH . G 5 HOH B 15 1015 23 HOH HOH . G 5 HOH B 16 1016 3 HOH HOH . G 5 HOH B 17 1017 67 HOH HOH . G 5 HOH B 18 1018 16 HOH HOH . G 5 HOH B 19 1019 24 HOH HOH . G 5 HOH B 20 1020 1 HOH HOH . G 5 HOH B 21 1021 137 HOH HOH . G 5 HOH B 22 1022 134 HOH HOH . G 5 HOH B 23 1023 10 HOH HOH . G 5 HOH B 24 1024 108 HOH HOH . G 5 HOH B 25 1025 11 HOH HOH . G 5 HOH B 26 1026 66 HOH HOH . G 5 HOH B 27 1027 6 HOH HOH . G 5 HOH B 28 1028 34 HOH HOH . G 5 HOH B 29 1029 70 HOH HOH . G 5 HOH B 30 1030 40 HOH HOH . G 5 HOH B 31 1031 81 HOH HOH . G 5 HOH B 32 1032 78 HOH HOH . G 5 HOH B 33 1033 37 HOH HOH . G 5 HOH B 34 1034 17 HOH HOH . G 5 HOH B 35 1035 44 HOH HOH . G 5 HOH B 36 1036 13 HOH HOH . G 5 HOH B 37 1037 93 HOH HOH . G 5 HOH B 38 1038 36 HOH HOH . G 5 HOH B 39 1039 133 HOH HOH . G 5 HOH B 40 1040 38 HOH HOH . G 5 HOH B 41 1041 45 HOH HOH . G 5 HOH B 42 1042 50 HOH HOH . G 5 HOH B 43 1043 26 HOH HOH . G 5 HOH B 44 1044 28 HOH HOH . G 5 HOH B 45 1045 48 HOH HOH . G 5 HOH B 46 1046 33 HOH HOH . G 5 HOH B 47 1047 73 HOH HOH . G 5 HOH B 48 1048 76 HOH HOH . G 5 HOH B 49 1049 71 HOH HOH . G 5 HOH B 50 1050 101 HOH HOH . G 5 HOH B 51 1051 27 HOH HOH . G 5 HOH B 52 1052 77 HOH HOH . G 5 HOH B 53 1053 111 HOH HOH . G 5 HOH B 54 1054 102 HOH HOH . G 5 HOH B 55 1055 131 HOH HOH . G 5 HOH B 56 1056 109 HOH HOH . G 5 HOH B 57 1057 116 HOH HOH . G 5 HOH B 58 1058 120 HOH HOH . G 5 HOH B 59 1059 115 HOH HOH . G 5 HOH B 60 1060 90 HOH HOH . G 5 HOH B 61 1061 118 HOH HOH . G 5 HOH B 62 1062 69 HOH HOH . G 5 HOH B 63 1063 91 HOH HOH . G 5 HOH B 64 1064 121 HOH HOH . G 5 HOH B 65 1065 100 HOH HOH . G 5 HOH B 66 1066 87 HOH HOH . G 5 HOH B 67 1067 132 HOH HOH . G 5 HOH B 68 1068 104 HOH HOH . G 5 HOH B 69 1069 98 HOH HOH . G 5 HOH B 70 1070 82 HOH HOH . G 5 HOH B 71 1071 105 HOH HOH . G 5 HOH B 72 1072 88 HOH HOH . G 5 HOH B 73 1073 117 HOH HOH . G 5 HOH B 74 1074 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC MIX . . . E 4 -99.002 34.456 45.665 1 99.63 ? OAC MIX 1003 A 1 HETATM 2 C CAK MIX . . . E 4 -100.339 34.049 45.347 1 98.64 ? CAK MIX 1003 A 1 HETATM 3 C CAM MIX . . . E 4 -101.135 35.244 44.834 1 98.32 ? CAM MIX 1003 A 1 HETATM 4 N NAS MIX . . . E 4 -100.571 35.814 43.624 1 95.2 ? NAS MIX 1003 A 1 HETATM 5 C CAO MIX . . . E 4 -101.257 36.9 42.948 1 92.53 ? CAO MIX 1003 A 1 HETATM 6 C CAQ MIX . . . E 4 -100.495 38.218 43.046 1 91.95 ? CAQ MIX 1003 A 1 HETATM 7 N NAU MIX . . . E 4 -99.3 38.188 42.222 1 91.93 ? NAU MIX 1003 A 1 HETATM 8 C CAY MIX . . . E 4 -98.756 39.325 41.732 1 87.37 ? CAY MIX 1003 A 1 HETATM 9 C CAI MIX . . . E 4 -97.947 40.147 42.516 1 83.07 ? CAI MIX 1003 A 1 HETATM 10 C CAJ MIX . . . E 4 -97.377 41.318 42.01 1 83.07 ? CAJ MIX 1003 A 1 HETATM 11 C CBE MIX . . . E 4 -99.012 39.678 40.315 1 83.27 ? CBE MIX 1003 A 1 HETATM 12 C CBA MIX . . . E 4 -99.865 38.822 39.448 1 82.58 ? CBA MIX 1003 A 1 HETATM 13 O OAA MIX . . . E 4 -100.379 37.774 39.899 1 82.38 ? OAA MIX 1003 A 1 HETATM 14 C CBC MIX . . . E 4 -100.096 39.23 38.034 1 82.26 ? CBC MIX 1003 A 1 HETATM 15 C CAW MIX . . . E 4 -100.931 38.418 37.117 1 79.15 ? CAW MIX 1003 A 1 HETATM 16 O OAE MIX . . . E 4 -101.506 37.268 37.562 1 77.48 ? OAE MIX 1003 A 1 HETATM 17 C CAG MIX . . . E 4 -101.121 38.84 35.803 1 84.59 ? CAG MIX 1003 A 1 HETATM 18 C CAH MIX . . . E 4 -100.549 40.013 35.304 1 89.87 ? CAH MIX 1003 A 1 HETATM 19 C CAX MIX . . . E 4 -99.747 40.842 36.09 1 92.46 ? CAX MIX 1003 A 1 HETATM 20 O OAF MIX . . . E 4 -99.199 41.982 35.58 1 96.19 ? OAF MIX 1003 A 1 HETATM 21 C CBD MIX . . . E 4 -99.489 40.474 37.504 1 88.17 ? CBD MIX 1003 A 1 HETATM 22 C CBB MIX . . . E 4 -98.641 41.332 38.371 1 89.78 ? CBB MIX 1003 A 1 HETATM 23 O OAB MIX . . . E 4 -98.135 42.38 37.913 1 90.04 ? OAB MIX 1003 A 1 HETATM 24 C CBF MIX . . . E 4 -98.41 40.921 39.784 1 86.17 ? CBF MIX 1003 A 1 HETATM 25 C CAZ MIX . . . E 4 -97.573 41.741 40.691 1 85.88 ? CAZ MIX 1003 A 1 HETATM 26 N NAV MIX . . . E 4 -97.028 42.874 40.187 1 86.11 ? NAV MIX 1003 A 1 HETATM 27 C CAR MIX . . . E 4 -96.292 43.825 40.994 1 85.74 ? CAR MIX 1003 A 1 HETATM 28 C CAP MIX . . . E 4 -97.156 44.601 41.977 1 85.62 ? CAP MIX 1003 A 1 HETATM 29 N NAT MIX . . . E 4 -96.471 44.701 43.246 1 87.17 ? NAT MIX 1003 A 1 HETATM 30 C CAN MIX . . . E 4 -95.055 45.006 43.247 1 90.7 ? CAN MIX 1003 A 1 HETATM 31 C CAL MIX . . . E 4 -94.673 45.977 44.355 1 89.57 ? CAL MIX 1003 A 1 HETATM 32 O OAD MIX . . . E 4 -94.487 45.26 45.577 1 89.84 ? OAD MIX 1003 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #