data_6GHH # _model_server_result.job_id Xhbx4Kol9nT93D8h8yt2YA _model_server_result.datetime_utc '2024-11-16 02:34:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ghh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6GHH # _exptl.entry_id 6GHH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 214.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-TRIDECANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GHH _cell.length_a 53.588 _cell.length_b 53.588 _cell.length_c 111.607 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GHH _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 106 A CYS 106 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'C13 H26 O2' _chem_comp.formula_weight 214.344 _chem_comp.id TDA _chem_comp.mon_nstd_flag . _chem_comp.name 'N-TRIDECANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O21 C21 TDA sing 290 n n O21 H21 TDA sing 291 n n O22 C21 TDA doub 292 n n C21 C22 TDA sing 293 n n C22 C23 TDA sing 294 n n C22 H222 TDA sing 295 n n C22 H221 TDA sing 296 n n C23 C24 TDA sing 297 n n C23 H232 TDA sing 298 n n C23 H231 TDA sing 299 n n C24 C25 TDA sing 300 n n C24 H242 TDA sing 301 n n C24 H241 TDA sing 302 n n C25 C26 TDA sing 303 n n C25 H252 TDA sing 304 n n C25 H251 TDA sing 305 n n C26 C27 TDA sing 306 n n C26 H262 TDA sing 307 n n C26 H261 TDA sing 308 n n C27 C28 TDA sing 309 n n C27 H272 TDA sing 310 n n C27 H271 TDA sing 311 n n C28 C29 TDA sing 312 n n C28 H282 TDA sing 313 n n C28 H281 TDA sing 314 n n C29 C30 TDA sing 315 n n C29 H292 TDA sing 316 n n C29 H291 TDA sing 317 n n C30 C31 TDA sing 318 n n C30 H302 TDA sing 319 n n C30 H301 TDA sing 320 n n C31 C32 TDA sing 321 n n C31 H312 TDA sing 322 n n C31 H311 TDA sing 323 n n C32 C33 TDA sing 324 n n C32 H322 TDA sing 325 n n C32 H321 TDA sing 326 n n C33 H333 TDA sing 327 n n C33 H332 TDA sing 328 n n C33 H331 TDA sing 329 n n # _atom_sites.entry_id 6GHH _atom_sites.fract_transf_matrix[1][1] 0.018661 _atom_sites.fract_transf_matrix[1][2] 0.010774 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00896 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TDA A 1 201 1 TDA DRG . C 3 HOH A 1 301 20 HOH HOH . C 3 HOH A 2 302 140 HOH HOH . C 3 HOH A 3 303 34 HOH HOH . C 3 HOH A 4 304 100 HOH HOH . C 3 HOH A 5 305 146 HOH HOH . C 3 HOH A 6 306 7 HOH HOH . C 3 HOH A 7 307 2 HOH HOH . C 3 HOH A 8 308 9 HOH HOH . C 3 HOH A 9 309 105 HOH HOH . C 3 HOH A 10 310 103 HOH HOH . C 3 HOH A 11 311 40 HOH HOH . C 3 HOH A 12 312 6 HOH HOH . C 3 HOH A 13 313 32 HOH HOH . C 3 HOH A 14 314 132 HOH HOH . C 3 HOH A 15 315 83 HOH HOH . C 3 HOH A 16 316 101 HOH HOH . C 3 HOH A 17 317 75 HOH HOH . C 3 HOH A 18 318 41 HOH HOH . C 3 HOH A 19 319 107 HOH HOH . C 3 HOH A 20 320 28 HOH HOH . C 3 HOH A 21 321 133 HOH HOH . C 3 HOH A 22 322 14 HOH HOH . C 3 HOH A 23 323 25 HOH HOH . C 3 HOH A 24 324 17 HOH HOH . C 3 HOH A 25 325 23 HOH HOH . C 3 HOH A 26 326 86 HOH HOH . C 3 HOH A 27 327 27 HOH HOH . C 3 HOH A 28 328 4 HOH HOH . C 3 HOH A 29 329 11 HOH HOH . C 3 HOH A 30 330 74 HOH HOH . C 3 HOH A 31 331 58 HOH HOH . C 3 HOH A 32 332 80 HOH HOH . C 3 HOH A 33 333 8 HOH HOH . C 3 HOH A 34 334 31 HOH HOH . C 3 HOH A 35 335 139 HOH HOH . C 3 HOH A 36 336 141 HOH HOH . C 3 HOH A 37 337 90 HOH HOH . C 3 HOH A 38 338 111 HOH HOH . C 3 HOH A 39 339 64 HOH HOH . C 3 HOH A 40 340 134 HOH HOH . C 3 HOH A 41 341 79 HOH HOH . C 3 HOH A 42 342 81 HOH HOH . C 3 HOH A 43 343 15 HOH HOH . C 3 HOH A 44 344 85 HOH HOH . C 3 HOH A 45 345 76 HOH HOH . C 3 HOH A 46 346 96 HOH HOH . C 3 HOH A 47 347 12 HOH HOH . C 3 HOH A 48 348 94 HOH HOH . C 3 HOH A 49 349 5 HOH HOH . C 3 HOH A 50 350 82 HOH HOH . C 3 HOH A 51 351 149 HOH HOH . C 3 HOH A 52 352 3 HOH HOH . C 3 HOH A 53 353 78 HOH HOH . C 3 HOH A 54 354 37 HOH HOH . C 3 HOH A 55 355 145 HOH HOH . C 3 HOH A 56 356 51 HOH HOH . C 3 HOH A 57 357 44 HOH HOH . C 3 HOH A 58 358 13 HOH HOH . C 3 HOH A 59 359 26 HOH HOH . C 3 HOH A 60 360 95 HOH HOH . C 3 HOH A 61 361 148 HOH HOH . C 3 HOH A 62 362 89 HOH HOH . C 3 HOH A 63 363 91 HOH HOH . C 3 HOH A 64 364 130 HOH HOH . C 3 HOH A 65 365 29 HOH HOH . C 3 HOH A 66 366 30 HOH HOH . C 3 HOH A 67 367 99 HOH HOH . C 3 HOH A 68 368 93 HOH HOH . C 3 HOH A 69 369 62 HOH HOH . C 3 HOH A 70 370 21 HOH HOH . C 3 HOH A 71 371 16 HOH HOH . C 3 HOH A 72 372 52 HOH HOH . C 3 HOH A 73 373 125 HOH HOH . C 3 HOH A 74 374 10 HOH HOH . C 3 HOH A 75 375 92 HOH HOH . C 3 HOH A 76 376 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O21 TDA . . . B 2 29.748 -47.255 113.266 1 90.62 ? O21 TDA 201 A 1 HETATM 2 O O22 TDA . . . B 2 30.787 -48.735 112.092 1 92.69 ? O22 TDA 201 A 1 HETATM 3 C C21 TDA . . . B 2 30.836 -47.721 112.841 1 83.24 ? C21 TDA 201 A 1 HETATM 4 C C22 TDA . . . B 2 32.129 -47.085 113.263 1 72.83 ? C22 TDA 201 A 1 HETATM 5 C C23 TDA . . . B 2 33.313 -47.048 112.346 1 59.22 ? C23 TDA 201 A 1 HETATM 6 C C24 TDA . . . B 2 34.67 -47.251 112.94 1 51.22 ? C24 TDA 201 A 1 HETATM 7 C C25 TDA . . . B 2 35.829 -47.507 112.043 1 42.44 ? C25 TDA 201 A 1 HETATM 8 C C26 TDA . . . B 2 36.716 -48.677 112.263 1 37.12 ? C26 TDA 201 A 1 HETATM 9 C C27 TDA . . . B 2 38.039 -48.721 111.58 1 31.74 ? C27 TDA 201 A 1 HETATM 10 C C28 TDA . . . B 2 38.98 -49.84 111.851 1 28.33 ? C28 TDA 201 A 1 HETATM 11 C C29 TDA . . . B 2 40.297 -49.776 111.18 1 28.06 ? C29 TDA 201 A 1 HETATM 12 C C30 TDA . . . B 2 41.222 -50.921 111.206 1 28.75 ? C30 TDA 201 A 1 HETATM 13 C C31 TDA . . . B 2 42.423 -50.749 110.378 1 30.6 ? C31 TDA 201 A 1 HETATM 14 C C32 TDA . . . B 2 43.516 -51.727 110.498 1 31.48 ? C32 TDA 201 A 1 HETATM 15 C C33 TDA . . . B 2 44.662 -51.548 109.574 1 32.41 ? C33 TDA 201 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #