data_6GHJ # _model_server_result.job_id kgMTPKjyQEwIlUoDZtiiDA _model_server_result.datetime_utc '2024-11-27 06:00:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ghj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":504}' # _entry.id 6GHJ # _exptl.entry_id 6GHJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GHJ _cell.length_a 101.55 _cell.length_b 108.22 _cell.length_c 111.61 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GHJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 316 A SER 316 1_555 H NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc2 A OG SER 316 A SER 316 1_555 H NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? metalc ? metalc3 A O PHE 319 A PHE 319 1_555 H NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc4 H NA NA . A NA 506 1_555 W O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc5 H NA NA . A NA 506 1_555 W O HOH . A HOH 626 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc6 H NA NA . A NA 506 1_555 W O HOH . A HOH 696 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 6GHJ _atom_sites.fract_transf_matrix[1][1] 0.009847 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00924 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00896 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 501 1 PO4 PO4 . D 3 PO4 A 1 502 2 PO4 PO4 . E 3 PO4 A 1 503 3 PO4 PO4 . F 4 1PE A 1 504 4 1PE 1PE . G 5 EPE A 1 505 5 EPE EPE . H 6 NA A 1 506 6 NA NA . I 7 78N A 1 507 1 78N 78N . J 8 78M A 1 508 2 78M 78M . K 7 78N A 1 509 3 78N 78N . L 8 78M A 1 510 4 78M 78M . M 7 78N A 1 511 7 78N 78N . N 7 78N A 1 512 8 78N 78N . O 7 78N A 1 513 10 78N 78N . P 7 78N A 1 514 11 78N 78N . Q 7 78N A 1 515 12 78N 78N . R 7 78N A 1 516 16 78N 78N . S 7 78N A 1 517 17 78N 78N . T 7 78N A 1 518 18 78N 78N . U 7 78N A 1 519 20 78N 78N . V 8 78M A 1 520 24 78M 78M . W 9 HOH A 1 601 49 HOH HOH . W 9 HOH A 2 602 88 HOH HOH . W 9 HOH A 3 603 5 HOH HOH . W 9 HOH A 4 604 65 HOH HOH . W 9 HOH A 5 605 43 HOH HOH . W 9 HOH A 6 606 60 HOH HOH . W 9 HOH A 7 607 13 HOH HOH . W 9 HOH A 8 608 6 HOH HOH . W 9 HOH A 9 609 79 HOH HOH . W 9 HOH A 10 610 63 HOH HOH . W 9 HOH A 11 611 93 HOH HOH . W 9 HOH A 12 612 81 HOH HOH . W 9 HOH A 13 613 96 HOH HOH . W 9 HOH A 14 614 29 HOH HOH . W 9 HOH A 15 615 17 HOH HOH . W 9 HOH A 16 616 39 HOH HOH . W 9 HOH A 17 617 4 HOH HOH . W 9 HOH A 18 618 20 HOH HOH . W 9 HOH A 19 619 12 HOH HOH . W 9 HOH A 20 620 89 HOH HOH . W 9 HOH A 21 621 68 HOH HOH . W 9 HOH A 22 622 28 HOH HOH . W 9 HOH A 23 623 50 HOH HOH . W 9 HOH A 24 624 87 HOH HOH . W 9 HOH A 25 625 7 HOH HOH . W 9 HOH A 26 626 72 HOH HOH . W 9 HOH A 27 627 52 HOH HOH . W 9 HOH A 28 628 1 HOH HOH . W 9 HOH A 29 629 14 HOH HOH . W 9 HOH A 30 630 83 HOH HOH . W 9 HOH A 31 631 8 HOH HOH . W 9 HOH A 32 632 80 HOH HOH . W 9 HOH A 33 633 75 HOH HOH . W 9 HOH A 34 634 23 HOH HOH . W 9 HOH A 35 635 98 HOH HOH . W 9 HOH A 36 636 19 HOH HOH . W 9 HOH A 37 637 37 HOH HOH . W 9 HOH A 38 638 45 HOH HOH . W 9 HOH A 39 639 38 HOH HOH . W 9 HOH A 40 640 40 HOH HOH . W 9 HOH A 41 641 86 HOH HOH . W 9 HOH A 42 642 2 HOH HOH . W 9 HOH A 43 643 10 HOH HOH . W 9 HOH A 44 644 32 HOH HOH . W 9 HOH A 45 645 46 HOH HOH . W 9 HOH A 46 646 85 HOH HOH . W 9 HOH A 47 647 100 HOH HOH . W 9 HOH A 48 648 33 HOH HOH . W 9 HOH A 49 649 35 HOH HOH . W 9 HOH A 50 650 57 HOH HOH . W 9 HOH A 51 651 24 HOH HOH . W 9 HOH A 52 652 99 HOH HOH . W 9 HOH A 53 653 25 HOH HOH . W 9 HOH A 54 654 70 HOH HOH . W 9 HOH A 55 655 42 HOH HOH . W 9 HOH A 56 656 48 HOH HOH . W 9 HOH A 57 657 34 HOH HOH . W 9 HOH A 58 658 22 HOH HOH . W 9 HOH A 59 659 15 HOH HOH . W 9 HOH A 60 660 61 HOH HOH . W 9 HOH A 61 661 27 HOH HOH . W 9 HOH A 62 662 30 HOH HOH . W 9 HOH A 63 663 47 HOH HOH . W 9 HOH A 64 664 36 HOH HOH . W 9 HOH A 65 665 90 HOH HOH . W 9 HOH A 66 666 18 HOH HOH . W 9 HOH A 67 667 76 HOH HOH . W 9 HOH A 68 668 66 HOH HOH . W 9 HOH A 69 669 54 HOH HOH . W 9 HOH A 70 670 53 HOH HOH . W 9 HOH A 71 671 78 HOH HOH . W 9 HOH A 72 672 21 HOH HOH . W 9 HOH A 73 673 3 HOH HOH . W 9 HOH A 74 674 92 HOH HOH . W 9 HOH A 75 675 59 HOH HOH . W 9 HOH A 76 676 73 HOH HOH . W 9 HOH A 77 677 77 HOH HOH . W 9 HOH A 78 678 67 HOH HOH . W 9 HOH A 79 679 58 HOH HOH . W 9 HOH A 80 680 64 HOH HOH . W 9 HOH A 81 681 11 HOH HOH . W 9 HOH A 82 682 84 HOH HOH . W 9 HOH A 83 683 71 HOH HOH . W 9 HOH A 84 684 97 HOH HOH . W 9 HOH A 85 685 44 HOH HOH . W 9 HOH A 86 686 101 HOH HOH . W 9 HOH A 87 687 74 HOH HOH . W 9 HOH A 88 688 26 HOH HOH . W 9 HOH A 89 689 55 HOH HOH . W 9 HOH A 90 690 56 HOH HOH . W 9 HOH A 91 691 91 HOH HOH . W 9 HOH A 92 692 41 HOH HOH . W 9 HOH A 93 693 9 HOH HOH . W 9 HOH A 94 694 95 HOH HOH . W 9 HOH A 95 695 51 HOH HOH . W 9 HOH A 96 696 62 HOH HOH . W 9 HOH A 97 697 31 HOH HOH . W 9 HOH A 98 698 94 HOH HOH . W 9 HOH A 99 699 69 HOH HOH . W 9 HOH A 100 700 82 HOH HOH . X 9 HOH B 1 101 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH4 1PE . . . F 4 26.483 14.404 19.916 1 66.59 ? OH4 1PE 504 A 1 HETATM 2 C C14 1PE . . . F 4 27.867 13.982 18.007 1 60.6 ? C14 1PE 504 A 1 HETATM 3 C C24 1PE . . . F 4 27.812 14.493 19.458 1 60.47 ? C24 1PE 504 A 1 HETATM 4 O OH5 1PE . . . F 4 27.512 12.62 17.963 1 62.74 ? OH5 1PE 504 A 1 HETATM 5 C C15 1PE . . . F 4 29.128 10.865 17.583 1 59.96 ? C15 1PE 504 A 1 HETATM 6 C C25 1PE . . . F 4 28.204 11.903 16.938 1 59.25 ? C25 1PE 504 A 1 HETATM 7 O OH6 1PE . . . F 4 28.363 10.133 18.519 1 65.14 ? OH6 1PE 504 A 1 HETATM 8 C C16 1PE . . . F 4 30.326 8.858 19.142 1 64.84 ? C16 1PE 504 A 1 HETATM 9 C C26 1PE . . . F 4 29.128 9.684 19.645 1 66.45 ? C26 1PE 504 A 1 HETATM 10 O OH7 1PE . . . F 4 31.465 9.525 19.612 1 70.87 ? OH7 1PE 504 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #