data_6GHJ
#
_model_server_result.job_id            6sp96durzdOE7kSrzz5cCg 
_model_server_result.datetime_utc      '2024-11-27 06:12:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ghj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":511}' 
#
_entry.id    6GHJ 
#
_exptl.entry_id    6GHJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              314.46 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6GHJ 
_cell.length_a            101.55 
_cell.length_b            108.22 
_cell.length_c            111.61 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GHJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 I N N 
? 7 K N N 
? 7 M N N 
? 7 N N N 
? 7 O N N 
? 7 P N N 
? 7 Q N N 
? 7 R N N 
? 7 S N N 
? 7 T N N 
? 7 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O SER 316 A SER 316 1_555 H NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc2 A OG SER 316 A SER 316 1_555 H NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? 
metalc ? metalc3 A O PHE 319 A PHE 319 1_555 H NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc4 H NA NA . A NA 506 1_555 W O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
metalc ? metalc5 H NA NA . A NA 506 1_555 W O HOH . A HOH 626 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? 
metalc ? metalc6 H NA NA . A NA 506 1_555 W O HOH . A HOH 696 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
#
_chem_comp.formula           'C18 H34 O4' 
_chem_comp.formula_weight    314.46 
_chem_comp.id                78N 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '7.8 MONOACYLGLYCEROL (2R)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O22 C19 78N sing 93 n n 
C19 C18 78N sing 94 n n 
C18 O20 78N sing 95 n n 
C18 C17 78N sing 96 n n 
C17 O16 78N sing 97 n n 
O16 C8 78N sing 98 n n 
C8 O15 78N doub 99 n n 
C8 C7 78N sing 100 n n 
C7 C6 78N sing 101 n n 
C6 C5 78N sing 102 n n 
C5 C4 78N sing 103 n n 
C4 C3 78N sing 104 n n 
C3 C2 78N sing 105 n n 
C2 C1 78N doub 106 z n 
C1 C9 78N sing 107 n n 
C9 C10 78N sing 108 n n 
C10 C11 78N sing 109 n n 
C11 C12 78N sing 110 n n 
C12 C13 78N sing 111 n n 
C13 C14 78N sing 112 n n 
C15 C14 78N sing 113 n n 
O22 H22 78N sing 114 n n 
C19 H191 78N sing 115 n n 
C19 H192 78N sing 116 n n 
C18 H18 78N sing 117 n n 
O20 H20 78N sing 118 n n 
C17 H171 78N sing 119 n n 
C17 H172 78N sing 120 n n 
C7 H71 78N sing 121 n n 
C7 H72 78N sing 122 n n 
C6 H61C 78N sing 123 n n 
C6 H62C 78N sing 124 n n 
C5 H51C 78N sing 125 n n 
C5 H52C 78N sing 126 n n 
C4 H41C 78N sing 127 n n 
C4 H42C 78N sing 128 n n 
C3 H31C 78N sing 129 n n 
C3 H32C 78N sing 130 n n 
C2 H2 78N sing 131 n n 
C1 H1 78N sing 132 n n 
C9 H91C 78N sing 133 n n 
C9 H92C 78N sing 134 n n 
C10 H101 78N sing 135 n n 
C10 H102 78N sing 136 n n 
C11 H111 78N sing 137 n n 
C11 H112 78N sing 138 n n 
C12 H121 78N sing 139 n n 
C12 H122 78N sing 140 n n 
C13 H131 78N sing 141 n n 
C13 H132 78N sing 142 n n 
C14 H141 78N sing 143 n n 
C14 H142 78N sing 144 n n 
C15 H151 78N sing 145 n n 
C15 H152 78N sing 146 n n 
C15 H153 78N sing 147 n n 
#
_atom_sites.entry_id                     6GHJ 
_atom_sites.fract_transf_matrix[1][1]    0.009847 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00924 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00896 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PO4 A 1 501 1 PO4 PO4 . 
D 3 PO4 A 1 502 2 PO4 PO4 . 
E 3 PO4 A 1 503 3 PO4 PO4 . 
F 4 1PE A 1 504 4 1PE 1PE . 
G 5 EPE A 1 505 5 EPE EPE . 
H 6 NA A 1 506 6 NA NA . 
I 7 78N A 1 507 1 78N 78N . 
J 8 78M A 1 508 2 78M 78M . 
K 7 78N A 1 509 3 78N 78N . 
L 8 78M A 1 510 4 78M 78M . 
M 7 78N A 1 511 7 78N 78N . 
N 7 78N A 1 512 8 78N 78N . 
O 7 78N A 1 513 10 78N 78N . 
P 7 78N A 1 514 11 78N 78N . 
Q 7 78N A 1 515 12 78N 78N . 
R 7 78N A 1 516 16 78N 78N . 
S 7 78N A 1 517 17 78N 78N . 
T 7 78N A 1 518 18 78N 78N . 
U 7 78N A 1 519 20 78N 78N . 
V 8 78M A 1 520 24 78M 78M . 
W 9 HOH A 1 601 49 HOH HOH . 
W 9 HOH A 2 602 88 HOH HOH . 
W 9 HOH A 3 603 5 HOH HOH . 
W 9 HOH A 4 604 65 HOH HOH . 
W 9 HOH A 5 605 43 HOH HOH . 
W 9 HOH A 6 606 60 HOH HOH . 
W 9 HOH A 7 607 13 HOH HOH . 
W 9 HOH A 8 608 6 HOH HOH . 
W 9 HOH A 9 609 79 HOH HOH . 
W 9 HOH A 10 610 63 HOH HOH . 
W 9 HOH A 11 611 93 HOH HOH . 
W 9 HOH A 12 612 81 HOH HOH . 
W 9 HOH A 13 613 96 HOH HOH . 
W 9 HOH A 14 614 29 HOH HOH . 
W 9 HOH A 15 615 17 HOH HOH . 
W 9 HOH A 16 616 39 HOH HOH . 
W 9 HOH A 17 617 4 HOH HOH . 
W 9 HOH A 18 618 20 HOH HOH . 
W 9 HOH A 19 619 12 HOH HOH . 
W 9 HOH A 20 620 89 HOH HOH . 
W 9 HOH A 21 621 68 HOH HOH . 
W 9 HOH A 22 622 28 HOH HOH . 
W 9 HOH A 23 623 50 HOH HOH . 
W 9 HOH A 24 624 87 HOH HOH . 
W 9 HOH A 25 625 7 HOH HOH . 
W 9 HOH A 26 626 72 HOH HOH . 
W 9 HOH A 27 627 52 HOH HOH . 
W 9 HOH A 28 628 1 HOH HOH . 
W 9 HOH A 29 629 14 HOH HOH . 
W 9 HOH A 30 630 83 HOH HOH . 
W 9 HOH A 31 631 8 HOH HOH . 
W 9 HOH A 32 632 80 HOH HOH . 
W 9 HOH A 33 633 75 HOH HOH . 
W 9 HOH A 34 634 23 HOH HOH . 
W 9 HOH A 35 635 98 HOH HOH . 
W 9 HOH A 36 636 19 HOH HOH . 
W 9 HOH A 37 637 37 HOH HOH . 
W 9 HOH A 38 638 45 HOH HOH . 
W 9 HOH A 39 639 38 HOH HOH . 
W 9 HOH A 40 640 40 HOH HOH . 
W 9 HOH A 41 641 86 HOH HOH . 
W 9 HOH A 42 642 2 HOH HOH . 
W 9 HOH A 43 643 10 HOH HOH . 
W 9 HOH A 44 644 32 HOH HOH . 
W 9 HOH A 45 645 46 HOH HOH . 
W 9 HOH A 46 646 85 HOH HOH . 
W 9 HOH A 47 647 100 HOH HOH . 
W 9 HOH A 48 648 33 HOH HOH . 
W 9 HOH A 49 649 35 HOH HOH . 
W 9 HOH A 50 650 57 HOH HOH . 
W 9 HOH A 51 651 24 HOH HOH . 
W 9 HOH A 52 652 99 HOH HOH . 
W 9 HOH A 53 653 25 HOH HOH . 
W 9 HOH A 54 654 70 HOH HOH . 
W 9 HOH A 55 655 42 HOH HOH . 
W 9 HOH A 56 656 48 HOH HOH . 
W 9 HOH A 57 657 34 HOH HOH . 
W 9 HOH A 58 658 22 HOH HOH . 
W 9 HOH A 59 659 15 HOH HOH . 
W 9 HOH A 60 660 61 HOH HOH . 
W 9 HOH A 61 661 27 HOH HOH . 
W 9 HOH A 62 662 30 HOH HOH . 
W 9 HOH A 63 663 47 HOH HOH . 
W 9 HOH A 64 664 36 HOH HOH . 
W 9 HOH A 65 665 90 HOH HOH . 
W 9 HOH A 66 666 18 HOH HOH . 
W 9 HOH A 67 667 76 HOH HOH . 
W 9 HOH A 68 668 66 HOH HOH . 
W 9 HOH A 69 669 54 HOH HOH . 
W 9 HOH A 70 670 53 HOH HOH . 
W 9 HOH A 71 671 78 HOH HOH . 
W 9 HOH A 72 672 21 HOH HOH . 
W 9 HOH A 73 673 3 HOH HOH . 
W 9 HOH A 74 674 92 HOH HOH . 
W 9 HOH A 75 675 59 HOH HOH . 
W 9 HOH A 76 676 73 HOH HOH . 
W 9 HOH A 77 677 77 HOH HOH . 
W 9 HOH A 78 678 67 HOH HOH . 
W 9 HOH A 79 679 58 HOH HOH . 
W 9 HOH A 80 680 64 HOH HOH . 
W 9 HOH A 81 681 11 HOH HOH . 
W 9 HOH A 82 682 84 HOH HOH . 
W 9 HOH A 83 683 71 HOH HOH . 
W 9 HOH A 84 684 97 HOH HOH . 
W 9 HOH A 85 685 44 HOH HOH . 
W 9 HOH A 86 686 101 HOH HOH . 
W 9 HOH A 87 687 74 HOH HOH . 
W 9 HOH A 88 688 26 HOH HOH . 
W 9 HOH A 89 689 55 HOH HOH . 
W 9 HOH A 90 690 56 HOH HOH . 
W 9 HOH A 91 691 91 HOH HOH . 
W 9 HOH A 92 692 41 HOH HOH . 
W 9 HOH A 93 693 9 HOH HOH . 
W 9 HOH A 94 694 95 HOH HOH . 
W 9 HOH A 95 695 51 HOH HOH . 
W 9 HOH A 96 696 62 HOH HOH . 
W 9 HOH A 97 697 31 HOH HOH . 
W 9 HOH A 98 698 94 HOH HOH . 
W 9 HOH A 99 699 69 HOH HOH . 
W 9 HOH A 100 700 82 HOH HOH . 
X 9 HOH B 1 101 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O22 78N . . . M 7 10.898 6.181 17.095 1 69.02 ? O22 78N 511 A 1 
HETATM 2 C C19 78N . . . M 7 10.779 7.112 15.995 1 69.23 ? C19 78N 511 A 1 
HETATM 3 C C18 78N . . . M 7 10.848 6.333 14.667 1 76.02 ? C18 78N 511 A 1 
HETATM 4 O O20 78N . . . M 7 9.534 5.929 14.287 1 89.8 ? O20 78N 511 A 1 
HETATM 5 C C17 78N . . . M 7 11.442 7.201 13.574 1 76.97 ? C17 78N 511 A 1 
HETATM 6 O O16 78N . . . M 7 12.81 6.875 13.434 1 82.92 ? O16 78N 511 A 1 
HETATM 7 C C8 78N . . . M 7 13.48 7.53 12.369 1 82.82 ? C8 78N 511 A 1 
HETATM 8 O O15 78N . . . M 7 12.88 7.843 11.385 1 95.57 ? O15 78N 511 A 1 
HETATM 9 C C7 78N . . . M 7 14.967 7.834 12.465 1 73.62 ? C7 78N 511 A 1 
HETATM 10 C C6 78N . . . M 7 15.412 8.522 11.161 1 68.85 ? C6 78N 511 A 1 
HETATM 11 C C5 78N . . . M 7 16.964 8.377 10.979 1 63.84 ? C5 78N 511 A 1 
HETATM 12 C C4 78N . . . M 7 17.273 8.507 9.494 1 60.36 ? C4 78N 511 A 1 
HETATM 13 C C3 78N . . . M 7 16.821 7.231 8.744 1 66.68 ? C3 78N 511 A 1 
HETATM 14 C C2 78N . . . M 7 17.707 7.007 7.53 1 59.07 ? C2 78N 511 A 1 
HETATM 15 C C1 78N . . . M 7 17.45 6 6.657 1 57.25 ? C1 78N 511 A 1 
HETATM 16 C C9 78N . . . M 7 16.233 5.076 6.922 1 70.55 ? C9 78N 511 A 1 
HETATM 17 C C10 78N . . . M 7 15.872 4.309 5.652 1 72.68 ? C10 78N 511 A 1 
HETATM 18 C C11 78N . . . M 7 14.348 4.155 5.58 1 78.14 ? C11 78N 511 A 1 
HETATM 19 C C12 78N . . . M 7 13.965 2.658 5.391 1 83.36 ? C12 78N 511 A 1 
HETATM 20 C C13 78N . . . M 7 14.679 2.081 4.166 1 84.46 ? C13 78N 511 A 1 
HETATM 21 C C15 78N . . . M 7 15.056 2.427 1.696 1 78.7 ? C15 78N 511 A 1 
HETATM 22 C C14 78N . . . M 7 14.122 2.729 2.877 1 81.12 ? C14 78N 511 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           22 
#