data_6GHW # _model_server_result.job_id Bq0WvICEuRYmz9qwolWNtQ _model_server_result.datetime_utc '2024-10-20 07:54:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ghw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 6GHW # _exptl.entry_id 6GHW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GHW _cell.length_a 85.296 _cell.length_b 85.296 _cell.length_c 155.463 _cell.Z_PDB 54 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GHW _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F 1 1,2,3 C,D,G 2 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 42.648 -73.868503 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 85.296 0 0 4 'crystal symmetry operation' 10_545 y+2/3,x-2/3,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 85.296 -49.245669 51.821 5 'crystal symmetry operation' 11_445 x-y-1/3,-y-2/3,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 -49.245669 51.821 6 'crystal symmetry operation' 12_555 -x+2/3,-x+y+1/3,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 42.648 24.622834 51.821 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C 8LJ 1 A 8LJ 1 1_555 A N ILE 2 A ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C ALA 33 A ALA 33 1_555 A N 8LJ 34 A 8LJ 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C 8LJ 34 A 8LJ 34 1_555 A N LEU 35 A LEU 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C 8LJ 1 B 8LJ 1 1_555 B N ILE 2 B ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 B C ALA 33 B ALA 33 1_555 B N 8LJ 34 B 8LJ 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 B C 8LJ 34 B 8LJ 34 1_555 B N LEU 35 B LEU 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 C C 8LJ 1 C 8LJ 1 1_555 C N ILE 2 C ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 C C ALA 33 C ALA 33 1_555 C N 8LJ 34 C 8LJ 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 C C 8LJ 34 C 8LJ 34 1_555 C N LEU 35 C LEU 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 B OE1 GLU 22 B GLU 22 1_555 D CA CA . C CA 101 15_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? metalc ? metalc2 B OE2 GLU 22 B GLU 22 1_555 D CA CA . C CA 101 15_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc3 B OE2 GLU 25 B GLU 25 1_555 D CA CA . C CA 101 15_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc4 C O ARG 29 C ARG 29 1_555 D CA CA . C CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc5 C OD2 ASP 32 C ASP 32 1_555 D CA CA . C CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc6 D CA CA . C CA 101 1_555 G O HOH . C HOH 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6GHW _atom_sites.fract_transf_matrix[1][1] 0.011724 _atom_sites.fract_transf_matrix[1][2] 0.006769 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013538 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006432 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CA C 1 101 1 CA CA . E 3 HOH A 1 101 70 HOH HOH . E 3 HOH A 2 102 44 HOH HOH . E 3 HOH A 3 103 58 HOH HOH . E 3 HOH A 4 104 10 HOH HOH . E 3 HOH A 5 105 19 HOH HOH . E 3 HOH A 6 106 6 HOH HOH . E 3 HOH A 7 107 24 HOH HOH . E 3 HOH A 8 108 3 HOH HOH . E 3 HOH A 9 109 11 HOH HOH . E 3 HOH A 10 110 57 HOH HOH . E 3 HOH A 11 111 64 HOH HOH . E 3 HOH A 12 112 13 HOH HOH . E 3 HOH A 13 113 48 HOH HOH . E 3 HOH A 14 114 31 HOH HOH . E 3 HOH A 15 115 18 HOH HOH . E 3 HOH A 16 116 9 HOH HOH . E 3 HOH A 17 117 21 HOH HOH . E 3 HOH A 18 118 43 HOH HOH . E 3 HOH A 19 119 51 HOH HOH . E 3 HOH A 20 120 54 HOH HOH . E 3 HOH A 21 121 46 HOH HOH . E 3 HOH A 22 122 29 HOH HOH . F 3 HOH B 1 101 8 HOH HOH . F 3 HOH B 2 102 33 HOH HOH . F 3 HOH B 3 103 28 HOH HOH . F 3 HOH B 4 104 2 HOH HOH . F 3 HOH B 5 105 55 HOH HOH . F 3 HOH B 6 106 1 HOH HOH . F 3 HOH B 7 107 39 HOH HOH . F 3 HOH B 8 108 61 HOH HOH . F 3 HOH B 9 109 15 HOH HOH . F 3 HOH B 10 110 49 HOH HOH . F 3 HOH B 11 111 35 HOH HOH . F 3 HOH B 12 112 30 HOH HOH . F 3 HOH B 13 113 23 HOH HOH . F 3 HOH B 14 114 41 HOH HOH . F 3 HOH B 15 115 7 HOH HOH . F 3 HOH B 16 116 53 HOH HOH . F 3 HOH B 17 117 68 HOH HOH . F 3 HOH B 18 118 69 HOH HOH . F 3 HOH B 19 119 63 HOH HOH . F 3 HOH B 20 120 20 HOH HOH . G 3 HOH C 1 201 40 HOH HOH . G 3 HOH C 2 202 27 HOH HOH . G 3 HOH C 3 203 50 HOH HOH . G 3 HOH C 4 204 62 HOH HOH . G 3 HOH C 5 205 45 HOH HOH . G 3 HOH C 6 206 25 HOH HOH . G 3 HOH C 7 207 14 HOH HOH . G 3 HOH C 8 208 17 HOH HOH . G 3 HOH C 9 209 34 HOH HOH . G 3 HOH C 10 210 59 HOH HOH . G 3 HOH C 11 211 67 HOH HOH . G 3 HOH C 12 212 47 HOH HOH . G 3 HOH C 13 213 4 HOH HOH . G 3 HOH C 14 214 32 HOH HOH . G 3 HOH C 15 215 56 HOH HOH . G 3 HOH C 16 216 52 HOH HOH . G 3 HOH C 17 217 12 HOH HOH . G 3 HOH C 18 218 36 HOH HOH . G 3 HOH C 19 219 60 HOH HOH . G 3 HOH C 20 220 26 HOH HOH . G 3 HOH C 21 221 16 HOH HOH . G 3 HOH C 22 222 5 HOH HOH . G 3 HOH C 23 223 38 HOH HOH . G 3 HOH C 24 224 42 HOH HOH . G 3 HOH C 25 225 37 HOH HOH . G 3 HOH C 26 226 22 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 18.193 _atom_site.Cartn_y -18.587 _atom_site.Cartn_z 34.914 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 45.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #