data_6GI5
#
_model_server_result.job_id            1mn4287EfTTSXbuRldosCQ 
_model_server_result.datetime_utc      '2024-11-06 18:43:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gi5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    6GI5 
#
_exptl.entry_id    6GI5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              692.629 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[2-[[(2~{S})-2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-3-[[(2~{S})-2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-3-oxidanylidene-3-(prop-2-ynylamino)propyl]amino]-3-oxidanylidene-propyl]amino]-2-oxidanylidene-ethyl]-2,3-bis(oxidanyl)benzamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6GI5 
_cell.length_a            126.612 
_cell.length_b            126.612 
_cell.length_c            293.711 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GI5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C FE FE . A FE 301 1_555 D OAM 8SW . A 8SW 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc2 C FE FE . A FE 301 1_555 D OAJ 8SW . A 8SW 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc3 C FE FE . A FE 301 1_555 D OAI 8SW . A 8SW 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc4 C FE FE . A FE 301 1_555 D OAL 8SW . A 8SW 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc5 C FE FE . A FE 301 1_555 D OAH 8SW . A 8SW 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc6 C FE FE . A FE 301 1_555 D OAK 8SW . A 8SW 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc7 E FE FE . B FE 301 1_555 F OAJ 8SW . B 8SW 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc8 E FE FE . B FE 301 1_555 F OAI 8SW . B 8SW 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc9 E FE FE . B FE 301 1_555 F OAH 8SW . B 8SW 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc10 E FE FE . B FE 301 1_555 F OAK 8SW . B 8SW 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc11 E FE FE . B FE 301 1_555 F OAM 8SW . B 8SW 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc12 E FE FE . B FE 301 1_555 F OAL 8SW . B 8SW 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
#
_chem_comp.formula           'C32 H32 N6 O12' 
_chem_comp.formula_weight    692.629 
_chem_comp.id                8SW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[2-[[(2~{S})-2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-3-[[(2~{S})-2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-3-oxidanylidene-3-(prop-2-ynylamino)propyl]amino]-3-oxidanylidene-propyl]amino]-2-oxidanylidene-ethyl]-2,3-bis(oxidanyl)benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAE CBK 8SW doub 1 n n 
CAW CAQ 8SW doub 2 n y 
CAW CBV 8SW sing 3 n y 
CAQ CAT 8SW sing 4 n y 
CBK CBV 8SW sing 5 n n 
CBK NBG 8SW sing 6 n n 
CBV CBS 8SW doub 7 n y 
CBX NBG 8SW sing 8 n n 
CBX CBA 8SW sing 9 n n 
CBX CBL 8SW sing 10 n n 
CBA NBE 8SW sing 11 n n 
CAT CBP 8SW doub 12 n y 
CBL NBB 8SW sing 13 n n 
CBL OAF 8SW doub 14 n n 
CBS CBP 8SW sing 15 n y 
CBS OAM 8SW sing 16 n n 
NBB CAX 8SW sing 17 n n 
CBP OAJ 8SW sing 18 n n 
NBE C 8SW sing 19 n n 
CAN CAA 8SW trip 20 n n 
CAN CAX 8SW sing 21 n n 
O C 8SW doub 22 n n 
C CA 8SW sing 23 n n 
OAD CBJ 8SW doub 24 n n 
CAP CAS 8SW doub 25 n y 
CAP CAV 8SW sing 26 n y 
CAS CBO 8SW sing 27 n y 
OAI CBO 8SW sing 28 n n 
CAV CBU 8SW doub 29 n y 
CBO CBR 8SW doub 30 n y 
CBR CBU 8SW sing 31 n y 
CBR OAL 8SW sing 32 n n 
CBU CBJ 8SW sing 33 n n 
CBJ N 8SW sing 34 n n 
CA N 8SW sing 35 n n 
CA CB 8SW sing 36 n n 
NBD CB 8SW sing 37 n n 
NBD CBH 8SW sing 38 n n 
OAK CBQ 8SW sing 39 n n 
OAH CBN 8SW sing 40 n n 
CAY CBH 8SW sing 41 n n 
CAY NBC 8SW sing 42 n n 
CBH OAB 8SW doub 43 n n 
NBC CBI 8SW sing 44 n n 
CBQ CBN 8SW doub 45 n y 
CBQ CBT 8SW sing 46 n y 
CBN CAR 8SW sing 47 n y 
CBI CBT 8SW sing 48 n n 
CBI OAC 8SW doub 49 n n 
CBT CAU 8SW doub 50 n y 
CAR CAO 8SW doub 51 n y 
CAU CAO 8SW sing 52 n y 
OAM H1 8SW sing 53 n n 
OAJ H2 8SW sing 54 n n 
CAT H3 8SW sing 55 n n 
CAQ H4 8SW sing 56 n n 
CAW H5 8SW sing 57 n n 
NBG H6 8SW sing 58 n n 
CBX H7 8SW sing 59 n n 
NBB H8 8SW sing 60 n n 
CAX H9 8SW sing 61 n n 
CAX H10 8SW sing 62 n n 
CAA H11 8SW sing 63 n n 
CBA H12 8SW sing 64 n n 
CBA H13 8SW sing 65 n n 
NBE H14 8SW sing 66 n n 
CA H15 8SW sing 67 n n 
N H16 8SW sing 68 n n 
CAV H17 8SW sing 69 n n 
CAP H18 8SW sing 70 n n 
CAS H19 8SW sing 71 n n 
OAI H20 8SW sing 72 n n 
OAL H21 8SW sing 73 n n 
CB H22 8SW sing 74 n n 
CB H23 8SW sing 75 n n 
NBD H24 8SW sing 76 n n 
CAY H25 8SW sing 77 n n 
CAY H26 8SW sing 78 n n 
NBC H27 8SW sing 79 n n 
CAU H28 8SW sing 80 n n 
CAO H29 8SW sing 81 n n 
CAR H30 8SW sing 82 n n 
OAH H31 8SW sing 83 n n 
OAK H32 8SW sing 84 n n 
#
_atom_sites.entry_id                     6GI5 
_atom_sites.fract_transf_matrix[1][1]    0.007898 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007898 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003405 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FE A 1 301 1 FE FE . 
D 3 8SW A 1 302 3 8SW DRG . 
E 2 FE B 1 301 3 FE FE . 
F 3 8SW B 1 302 4 8SW DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAM 8SW . . . D 3 -42.725 -16.565 -63.399 1 203.67 ? OAM 8SW 302 A 1 
HETATM 2 C CBS 8SW . . . D 3 -43.432 -17.266 -64.336 1 197.24 ? CBS 8SW 302 A 1 
HETATM 3 C CBP 8SW . . . D 3 -43.876 -16.539 -65.427 1 165.61 ? CBP 8SW 302 A 1 
HETATM 4 O OAJ 8SW . . . D 3 -43.536 -15.217 -65.415 1 199.86 ? OAJ 8SW 302 A 1 
HETATM 5 C CAT 8SW . . . D 3 -44.622 -17.156 -66.427 1 143.89 ? CAT 8SW 302 A 1 
HETATM 6 C CAQ 8SW . . . D 3 -44.918 -18.514 -66.3 1 140.03 ? CAQ 8SW 302 A 1 
HETATM 7 C CAW 8SW . . . D 3 -44.477 -19.24 -65.187 1 172.25 ? CAW 8SW 302 A 1 
HETATM 8 C CBV 8SW . . . D 3 -43.709 -18.637 -64.176 1 222.45 ? CBV 8SW 302 A 1 
HETATM 9 C CBK 8SW . . . D 3 -43.294 -19.405 -63.059 1 248.5 ? CBK 8SW 302 A 1 
HETATM 10 O OAE 8SW . . . D 3 -43.566 -20.608 -62.998 1 201.01 ? OAE 8SW 302 A 1 
HETATM 11 N NBG 8SW . . . D 3 -42.617 -18.75 -62.078 1 264.35 ? NBG 8SW 302 A 1 
HETATM 12 C CBX 8SW . . . D 3 -42.246 -19.378 -60.779 1 223.46 ? CBX 8SW 302 A 1 
HETATM 13 C CBL 8SW . . . D 3 -43.017 -18.667 -59.643 1 237.44 ? CBL 8SW 302 A 1 
HETATM 14 O OAF 8SW . . . D 3 -43.378 -17.498 -59.762 1 254.95 ? OAF 8SW 302 A 1 
HETATM 15 N NBB 8SW . . . D 3 -43.285 -19.403 -58.552 1 218.08 ? NBB 8SW 302 A 1 
HETATM 16 C CAX 8SW . . . D 3 -43.932 -18.826 -57.354 1 179.4 ? CAX 8SW 302 A 1 
HETATM 17 C CAN 8SW . . . D 3 -45.415 -18.606 -57.578 1 162.7 ? CAN 8SW 302 A 1 
HETATM 18 C CAA 8SW . . . D 3 -46.601 -18.254 -57.628 1 127.16 ? CAA 8SW 302 A 1 
HETATM 19 C CBA 8SW . . . D 3 -40.723 -19.26 -60.513 1 180.79 ? CBA 8SW 302 A 1 
HETATM 20 N NBE 8SW . . . D 3 -40.325 -17.849 -60.267 1 196.72 ? NBE 8SW 302 A 1 
HETATM 21 C C 8SW . . . D 3 -39.406 -17.469 -59.341 1 167.38 ? C 8SW 302 A 1 
HETATM 22 O O 8SW . . . D 3 -38.876 -18.244 -58.545 1 134.63 ? O 8SW 302 A 1 
HETATM 23 C CA 8SW . . . D 3 -39.098 -15.953 -59.221 1 160.95 ? CA 8SW 302 A 1 
HETATM 24 N N 8SW . . . D 3 -39.25 -15.201 -60.512 1 156.63 ? N 8SW 302 A 1 
HETATM 25 C CBJ 8SW . . . D 3 -38.221 -14.518 -61.12 1 128.79 ? CBJ 8SW 302 A 1 
HETATM 26 O OAD 8SW . . . D 3 -37.064 -14.5 -60.68 1 86.97 ? OAD 8SW 302 A 1 
HETATM 27 C CBU 8SW . . . D 3 -38.472 -13.953 -62.397 1 127.12 ? CBU 8SW 302 A 1 
HETATM 28 C CAV 8SW . . . D 3 -37.386 -13.612 -63.22 1 124.21 ? CAV 8SW 302 A 1 
HETATM 29 C CAP 8SW . . . D 3 -37.563 -13.095 -64.512 1 107.74 ? CAP 8SW 302 A 1 
HETATM 30 C CAS 8SW . . . D 3 -38.841 -12.897 -65.024 1 108.77 ? CAS 8SW 302 A 1 
HETATM 31 C CBO 8SW . . . D 3 -39.932 -13.224 -64.228 1 126.99 ? CBO 8SW 302 A 1 
HETATM 32 O OAI 8SW . . . D 3 -41.223 -13.074 -64.639 1 131.65 ? OAI 8SW 302 A 1 
HETATM 33 C CBR 8SW . . . D 3 -39.747 -13.736 -62.945 1 134.21 ? CBR 8SW 302 A 1 
HETATM 34 O OAL 8SW . . . D 3 -40.868 -14.062 -62.24 1 137.32 ? OAL 8SW 302 A 1 
HETATM 35 C CB 8SW . . . D 3 -39.948 -15.384 -58.057 1 168.16 ? CB 8SW 302 A 1 
HETATM 36 N NBD 8SW . . . D 3 -41.407 -15.365 -58.333 1 202.02 ? NBD 8SW 302 A 1 
HETATM 37 C CBH 8SW . . . D 3 -42.339 -15.3 -57.348 1 205.53 ? CBH 8SW 302 A 1 
HETATM 38 O OAB 8SW . . . D 3 -42.07 -15.406 -56.15 1 204.05 ? OAB 8SW 302 A 1 
HETATM 39 C CAY 8SW . . . D 3 -43.813 -15.135 -57.802 1 173.22 ? CAY 8SW 302 A 1 
HETATM 40 N NBC 8SW . . . D 3 -43.923 -14.135 -58.888 1 163.15 ? NBC 8SW 302 A 1 
HETATM 41 C CBI 8SW . . . D 3 -44.32 -12.858 -58.682 1 153.66 ? CBI 8SW 302 A 1 
HETATM 42 O OAC 8SW . . . D 3 -44.562 -12.411 -57.557 1 145.71 ? OAC 8SW 302 A 1 
HETATM 43 C CBT 8SW . . . D 3 -44.206 -11.984 -59.783 1 146.35 ? CBT 8SW 302 A 1 
HETATM 44 C CAU 8SW . . . D 3 -44.295 -10.603 -59.574 1 144.55 ? CAU 8SW 302 A 1 
HETATM 45 C CAO 8SW . . . D 3 -44.123 -9.693 -60.627 1 145.26 ? CAO 8SW 302 A 1 
HETATM 46 C CAR 8SW . . . D 3 -43.838 -10.129 -61.92 1 126.03 ? CAR 8SW 302 A 1 
HETATM 47 C CBN 8SW . . . D 3 -43.742 -11.499 -62.139 1 144.86 ? CBN 8SW 302 A 1 
HETATM 48 O OAH 8SW . . . D 3 -43.441 -12.048 -63.348 1 142.62 ? OAH 8SW 302 A 1 
HETATM 49 C CBQ 8SW . . . D 3 -43.917 -12.397 -61.093 1 151.84 ? CBQ 8SW 302 A 1 
HETATM 50 O OAK 8SW . . . D 3 -43.753 -13.718 -61.391 1 160.99 ? OAK 8SW 302 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           50 
#