data_6GIC # _model_server_result.job_id 6iVNwGQxCOfboANxPgcPXQ _model_server_result.datetime_utc '2025-01-10 08:38:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gic # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6GIC # _exptl.entry_id 6GIC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.243 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description trans-oxyresveratrol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GIC _cell.length_a 58.612 _cell.length_b 93.903 _cell.length_c 95.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GIC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 69 A ASP 69 1_555 C MG MG . B MG 301 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? metalc ? metalc2 A OD2 ASP 69 A ASP 69 1_555 C MG MG . B MG 301 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc3 B OD2 ASP 125 B ASP 125 1_555 C MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc4 B OE1 GLU 131 B GLU 131 1_555 C MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? # _chem_comp.formula 'C14 H12 O4' _chem_comp.formula_weight 244.243 _chem_comp.id EZE _chem_comp.mon_nstd_flag . _chem_comp.name trans-oxyresveratrol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O14 C13 EZE sing 83 n n C13 C12 EZE doub 84 n y C13 C15 EZE sing 85 n y C12 C10 EZE sing 86 n y C15 C8 EZE doub 87 n y C10 O11 EZE sing 88 n n C10 C9 EZE doub 89 n y C8 C9 EZE sing 90 n y C8 C7 EZE sing 91 n n O17 C16 EZE sing 92 n n C6 C7 EZE doub 93 e n C6 C5 EZE sing 94 n n C16 C5 EZE doub 95 n y C16 C18 EZE sing 96 n y C5 C4 EZE sing 97 n y C18 C2 EZE doub 98 n y C4 C3 EZE doub 99 n y C2 C3 EZE sing 100 n y C2 O1 EZE sing 101 n n C4 H21 EZE sing 102 n n C6 H22 EZE sing 103 n n C7 H23 EZE sing 104 n n C15 H28 EZE sing 105 n n O1 H19 EZE sing 106 n n C3 H20 EZE sing 107 n n C9 H24 EZE sing 108 n n O11 H25 EZE sing 109 n n C12 H26 EZE sing 110 n n O14 H27 EZE sing 111 n n O17 H29 EZE sing 112 n n C18 H30 EZE sing 113 n n # _atom_sites.entry_id 6GIC _atom_sites.fract_transf_matrix[1][1] 0.017061 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010649 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010438 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG B 1 301 1 MG MG . D 3 EZE B 1 302 1 EZE LIG . E 4 EZH B 1 303 2 EZH LIG . F 5 HOH A 1 301 99 HOH HOH . F 5 HOH A 2 302 64 HOH HOH . F 5 HOH A 3 303 46 HOH HOH . F 5 HOH A 4 304 43 HOH HOH . F 5 HOH A 5 305 80 HOH HOH . F 5 HOH A 6 306 44 HOH HOH . F 5 HOH A 7 307 56 HOH HOH . F 5 HOH A 8 308 70 HOH HOH . F 5 HOH A 9 309 8 HOH HOH . F 5 HOH A 10 310 41 HOH HOH . F 5 HOH A 11 311 31 HOH HOH . F 5 HOH A 12 312 59 HOH HOH . F 5 HOH A 13 313 91 HOH HOH . F 5 HOH A 14 314 96 HOH HOH . F 5 HOH A 15 315 30 HOH HOH . F 5 HOH A 16 316 17 HOH HOH . F 5 HOH A 17 317 9 HOH HOH . F 5 HOH A 18 318 25 HOH HOH . F 5 HOH A 19 319 4 HOH HOH . F 5 HOH A 20 320 105 HOH HOH . F 5 HOH A 21 321 5 HOH HOH . F 5 HOH A 22 322 77 HOH HOH . F 5 HOH A 23 323 85 HOH HOH . F 5 HOH A 24 324 42 HOH HOH . F 5 HOH A 25 325 71 HOH HOH . F 5 HOH A 26 326 62 HOH HOH . F 5 HOH A 27 327 101 HOH HOH . F 5 HOH A 28 328 15 HOH HOH . F 5 HOH A 29 329 14 HOH HOH . F 5 HOH A 30 330 12 HOH HOH . F 5 HOH A 31 331 58 HOH HOH . F 5 HOH A 32 332 39 HOH HOH . F 5 HOH A 33 333 73 HOH HOH . F 5 HOH A 34 334 26 HOH HOH . F 5 HOH A 35 335 72 HOH HOH . F 5 HOH A 36 336 11 HOH HOH . F 5 HOH A 37 337 23 HOH HOH . F 5 HOH A 38 338 16 HOH HOH . F 5 HOH A 39 339 32 HOH HOH . F 5 HOH A 40 340 88 HOH HOH . F 5 HOH A 41 341 27 HOH HOH . F 5 HOH A 42 342 104 HOH HOH . F 5 HOH A 43 343 108 HOH HOH . F 5 HOH A 44 344 103 HOH HOH . G 5 HOH B 1 401 19 HOH HOH . G 5 HOH B 2 402 86 HOH HOH . G 5 HOH B 3 403 63 HOH HOH . G 5 HOH B 4 404 78 HOH HOH . G 5 HOH B 5 405 2 HOH HOH . G 5 HOH B 6 406 57 HOH HOH . G 5 HOH B 7 407 79 HOH HOH . G 5 HOH B 8 408 76 HOH HOH . G 5 HOH B 9 409 49 HOH HOH . G 5 HOH B 10 410 36 HOH HOH . G 5 HOH B 11 411 74 HOH HOH . G 5 HOH B 12 412 51 HOH HOH . G 5 HOH B 13 413 21 HOH HOH . G 5 HOH B 14 414 89 HOH HOH . G 5 HOH B 15 415 53 HOH HOH . G 5 HOH B 16 416 61 HOH HOH . G 5 HOH B 17 417 92 HOH HOH . G 5 HOH B 18 418 75 HOH HOH . G 5 HOH B 19 419 38 HOH HOH . G 5 HOH B 20 420 7 HOH HOH . G 5 HOH B 21 421 87 HOH HOH . G 5 HOH B 22 422 68 HOH HOH . G 5 HOH B 23 423 100 HOH HOH . G 5 HOH B 24 424 48 HOH HOH . G 5 HOH B 25 425 102 HOH HOH . G 5 HOH B 26 426 20 HOH HOH . G 5 HOH B 27 427 55 HOH HOH . G 5 HOH B 28 428 3 HOH HOH . G 5 HOH B 29 429 18 HOH HOH . G 5 HOH B 30 430 67 HOH HOH . G 5 HOH B 31 431 37 HOH HOH . G 5 HOH B 32 432 93 HOH HOH . G 5 HOH B 33 433 97 HOH HOH . G 5 HOH B 34 434 106 HOH HOH . G 5 HOH B 35 435 22 HOH HOH . G 5 HOH B 36 436 47 HOH HOH . G 5 HOH B 37 437 13 HOH HOH . G 5 HOH B 38 438 50 HOH HOH . G 5 HOH B 39 439 84 HOH HOH . G 5 HOH B 40 440 81 HOH HOH . G 5 HOH B 41 441 10 HOH HOH . G 5 HOH B 42 442 34 HOH HOH . G 5 HOH B 43 443 6 HOH HOH . G 5 HOH B 44 444 95 HOH HOH . G 5 HOH B 45 445 65 HOH HOH . G 5 HOH B 46 446 98 HOH HOH . G 5 HOH B 47 447 66 HOH HOH . G 5 HOH B 48 448 90 HOH HOH . G 5 HOH B 49 449 83 HOH HOH . G 5 HOH B 50 450 94 HOH HOH . G 5 HOH B 51 451 82 HOH HOH . G 5 HOH B 52 452 69 HOH HOH . G 5 HOH B 53 453 52 HOH HOH . G 5 HOH B 54 454 107 HOH HOH . G 5 HOH B 55 455 35 HOH HOH . G 5 HOH B 56 456 54 HOH HOH . G 5 HOH B 57 457 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 EZE . . . D 3 -4.025 -1.725 -1.095 1 46.14 ? C4 EZE 302 B 1 HETATM 2 C C5 EZE . . . D 3 -3.807 -1.349 -2.427 1 44.56 ? C5 EZE 302 B 1 HETATM 3 C C6 EZE . . . D 3 -3.675 -2.355 -3.496 1 38.4 ? C6 EZE 302 B 1 HETATM 4 C C7 EZE . . . D 3 -3.682 -3.655 -3.298 1 32.62 ? C7 EZE 302 B 1 HETATM 5 C C8 EZE . . . D 3 -3.601 -4.704 -4.305 1 46.45 ? C8 EZE 302 B 1 HETATM 6 C C10 EZE . . . D 3 -3.757 -7.042 -4.913 1 41.23 ? C10 EZE 302 B 1 HETATM 7 C C13 EZE . . . D 3 -3.654 -5.372 -6.623 1 44.74 ? C13 EZE 302 B 1 HETATM 8 C C15 EZE . . . D 3 -3.54 -4.376 -5.663 1 44.41 ? C15 EZE 302 B 1 HETATM 9 O O1 EZE . . . D 3 -4.183 1.54 0.554 1 42.97 ? O1 EZE 302 B 1 HETATM 10 C C2 EZE . . . D 3 -4.048 0.57 -0.401 1 41.59 ? C2 EZE 302 B 1 HETATM 11 C C3 EZE . . . D 3 -4.141 -0.78 -0.093 1 44.66 ? C3 EZE 302 B 1 HETATM 12 C C9 EZE . . . D 3 -3.697 -6.051 -3.942 1 47.06 ? C9 EZE 302 B 1 HETATM 13 O O11 EZE . . . D 3 -3.736 -8.367 -4.588 1 48.08 ? O11 EZE 302 B 1 HETATM 14 C C12 EZE . . . D 3 -3.756 -6.706 -6.26 1 46.52 ? C12 EZE 302 B 1 HETATM 15 O O14 EZE . . . D 3 -3.792 -5.047 -7.935 1 43.38 ? O14 EZE 302 B 1 HETATM 16 C C16 EZE . . . D 3 -3.692 0.024 -2.713 1 38.64 ? C16 EZE 302 B 1 HETATM 17 O O17 EZE . . . D 3 -3.391 0.471 -3.966 1 44.33 ? O17 EZE 302 B 1 HETATM 18 C C18 EZE . . . D 3 -3.818 0.972 -1.709 1 44.34 ? C18 EZE 302 B 1 HETATM 19 H H21 EZE . . . D 3 -4.106 -2.781 -0.84 1 55.37 ? H21 EZE 302 B 1 HETATM 20 H H22 EZE . . . D 3 -3.566 -1.971 -4.51 1 46.08 ? H22 EZE 302 B 1 HETATM 21 H H23 EZE . . . D 3 -3.756 -4.034 -2.279 1 39.14 ? H23 EZE 302 B 1 HETATM 22 H H28 EZE . . . D 3 -3.404 -3.336 -5.955 1 53.29 ? H28 EZE 302 B 1 HETATM 23 H H19 EZE . . . D 3 -4.347 1.098 1.428 1 51.56 ? H19 EZE 302 B 1 HETATM 24 H H20 EZE . . . D 3 -4.305 -1.109 0.932 1 53.59 ? H20 EZE 302 B 1 HETATM 25 H H24 EZE . . . D 3 -3.726 -6.31 -2.885 1 56.47 ? H24 EZE 302 B 1 HETATM 26 H H25 EZE . . . D 3 -3.676 -8.442 -3.6 1 57.7 ? H25 EZE 302 B 1 HETATM 27 H H26 EZE . . . D 3 -3.836 -7.477 -7.024 1 55.82 ? H26 EZE 302 B 1 HETATM 28 H H27 EZE . . . D 3 -4.762 -5.072 -8.147 1 52.05 ? H27 EZE 302 B 1 HETATM 29 H H29 EZE . . . D 3 -3.927 -0.058 -4.612 1 53.19 ? H29 EZE 302 B 1 HETATM 30 H H30 EZE . . . D 3 -3.737 2.032 -1.943 1 53.2 ? H30 EZE 302 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #