data_6GIQ
#
_model_server_result.job_id            4_YuDW4miTRCZmicWdkbfA 
_model_server_result.datetime_utc      '2024-12-03 18:45:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6giq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"BB","auth_seq_id":101}' 
#
_entry.id    6GIQ 
#
_exptl.entry_id    6GIQ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              734.039 
_entity.id                          30 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6GIQ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GIQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    32-meric 
_pdbx_struct_assembly.oligomeric_count      32 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 30 PA N N 
? 30 BB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 164 E CYS 164 1_555 E SG CYS 180 E CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 F SG CYS 101 F CYS 101 1_555 F SG CYS 123 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 N SG CYS 164 P CYS 164 1_555 N SG CYS 180 P CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 O SG CYS 101 Q CYS 101 1_555 O SG CYS 123 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf5 DA SG CYS 27 j CYS 27 1_555 DA SG CYS 59 j CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 DA SG CYS 37 j CYS 37 1_555 DA SG CYS 48 j CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 C NE2 HIS 82 C HIS 82 1_555 HA FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc2 C NE2 HIS 96 C HIS 96 1_555 IA FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? 
metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 HA FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 IA FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc5 D NE2 HIS 105 D HIS 105 1_555 MA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc6 L NE2 HIS 82 N HIS 82 1_555 SA FE HEC . N HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc7 L NE2 HIS 96 N HIS 96 1_555 TA FE HEC . N HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? 
metalc ? metalc8 L NE2 HIS 183 N HIS 183 1_555 SA FE HEC . N HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
metalc ? metalc9 L NE2 HIS 197 N HIS 197 1_555 TA FE HEC . N HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc10 M NE2 HIS 105 O HIS 105 1_555 YA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc11 U NE2 HIS 62 a HIS 62 1_555 DB FE HEA . a HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? 
metalc ? metalc12 U ND1 HIS 241 a HIS 241 1_555 CB CU CU . a CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
metalc ? metalc13 U NE2 HIS 291 a HIS 291 1_555 CB CU CU . a CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc14 U NE2 HIS 378 a HIS 378 1_555 DB FE HEA . a HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? 
#
_chem_comp.formula           'C40 H80 N O8 P' 
_chem_comp.formula_weight    734.039 
_chem_comp.id                PCF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 PCF sing 1074 n n 
N C13 PCF sing 1075 n n 
N C14 PCF sing 1076 n n 
N C15 PCF sing 1077 n n 
P O11 PCF sing 1078 n n 
P O12 PCF doub 1079 n n 
P O13 PCF sing 1080 n n 
P O14 PCF sing 1081 n n 
O11 C1 PCF sing 1082 n n 
O13 C11 PCF sing 1083 n n 
C11 C12 PCF sing 1084 n n 
C11 H111 PCF sing 1085 n n 
C11 H112 PCF sing 1086 n n 
C12 H121 PCF sing 1087 n n 
C12 H122 PCF sing 1088 n n 
C13 H131 PCF sing 1089 n n 
C13 H132 PCF sing 1090 n n 
C13 H133 PCF sing 1091 n n 
C14 H141 PCF sing 1092 n n 
C14 H142 PCF sing 1093 n n 
C14 H143 PCF sing 1094 n n 
C15 H151 PCF sing 1095 n n 
C15 H152 PCF sing 1096 n n 
C15 H153 PCF sing 1097 n n 
C1 C2 PCF sing 1098 n n 
C1 H11 PCF sing 1099 n n 
C1 H12 PCF sing 1100 n n 
C2 C3 PCF sing 1101 n n 
C2 O21 PCF sing 1102 n n 
C2 H21 PCF sing 1103 n n 
C3 O31 PCF sing 1104 n n 
C3 H31 PCF sing 1105 n n 
C3 H32 PCF sing 1106 n n 
O31 C31 PCF sing 1107 n n 
O32 C31 PCF doub 1108 n n 
C31 C32 PCF sing 1109 n n 
C32 C33 PCF sing 1110 n n 
C32 H321 PCF sing 1111 n n 
C32 H322 PCF sing 1112 n n 
C33 C34 PCF sing 1113 n n 
C33 H331 PCF sing 1114 n n 
C33 H332 PCF sing 1115 n n 
C34 C35 PCF sing 1116 n n 
C34 H341 PCF sing 1117 n n 
C34 H342 PCF sing 1118 n n 
C35 C36 PCF sing 1119 n n 
C35 H351 PCF sing 1120 n n 
C35 H352 PCF sing 1121 n n 
C36 C37 PCF sing 1122 n n 
C36 H361 PCF sing 1123 n n 
C36 H362 PCF sing 1124 n n 
C37 C38 PCF sing 1125 n n 
C37 H371 PCF sing 1126 n n 
C37 H372 PCF sing 1127 n n 
C38 C39 PCF sing 1128 n n 
C38 H381 PCF sing 1129 n n 
C38 H382 PCF sing 1130 n n 
C39 C40 PCF sing 1131 n n 
C39 H391 PCF sing 1132 n n 
C39 H392 PCF sing 1133 n n 
C40 C41 PCF sing 1134 n n 
C40 H401 PCF sing 1135 n n 
C40 H402 PCF sing 1136 n n 
C41 C42 PCF sing 1137 n n 
C41 H411 PCF sing 1138 n n 
C41 H412 PCF sing 1139 n n 
C42 C43 PCF sing 1140 n n 
C42 H421 PCF sing 1141 n n 
C42 H422 PCF sing 1142 n n 
C43 C44 PCF sing 1143 n n 
C43 H431 PCF sing 1144 n n 
C43 H432 PCF sing 1145 n n 
O21 C21 PCF sing 1146 n n 
O22 C21 PCF doub 1147 n n 
C21 C22 PCF sing 1148 n n 
C22 C23 PCF sing 1149 n n 
C22 H221 PCF sing 1150 n n 
C22 H222 PCF sing 1151 n n 
C23 C24 PCF sing 1152 n n 
C23 H231 PCF sing 1153 n n 
C23 H232 PCF sing 1154 n n 
C24 C25 PCF sing 1155 n n 
C24 H241 PCF sing 1156 n n 
C24 H242 PCF sing 1157 n n 
C25 C26 PCF sing 1158 n n 
C25 H251 PCF sing 1159 n n 
C25 H252 PCF sing 1160 n n 
C26 C27 PCF sing 1161 n n 
C26 H261 PCF sing 1162 n n 
C26 H262 PCF sing 1163 n n 
C27 C28 PCF sing 1164 n n 
C27 H271 PCF sing 1165 n n 
C27 H272 PCF sing 1166 n n 
C28 C29 PCF sing 1167 n n 
C28 H281 PCF sing 1168 n n 
C28 H282 PCF sing 1169 n n 
C29 C30 PCF sing 1170 n n 
C29 H291 PCF sing 1171 n n 
C29 H292 PCF sing 1172 n n 
C30 C47 PCF sing 1173 n n 
C30 H301 PCF sing 1174 n n 
C30 H302 PCF sing 1175 n n 
C47 C48 PCF sing 1176 n n 
C47 H471 PCF sing 1177 n n 
C47 H472 PCF sing 1178 n n 
C48 C49 PCF sing 1179 n n 
C48 H481 PCF sing 1180 n n 
C48 H482 PCF sing 1181 n n 
C49 C50 PCF sing 1182 n n 
C49 H491 PCF sing 1183 n n 
C49 H492 PCF sing 1184 n n 
C50 C51 PCF sing 1185 n n 
C50 H501 PCF sing 1186 n n 
C50 H502 PCF sing 1187 n n 
C51 C52 PCF sing 1188 n n 
C51 H511 PCF sing 1189 n n 
C51 H512 PCF sing 1190 n n 
C52 H521 PCF sing 1191 n n 
C52 H522 PCF sing 1192 n n 
C52 H523 PCF sing 1193 n n 
C44 C45 PCF sing 1194 n n 
C44 H441 PCF sing 1195 n n 
C44 H442 PCF sing 1196 n n 
C45 C46 PCF sing 1197 n n 
C45 H451 PCF sing 1198 n n 
C45 H452 PCF sing 1199 n n 
C46 H461 PCF sing 1200 n n 
C46 H462 PCF sing 1201 n n 
C46 H463 PCF sing 1202 n n 
#
_atom_sites.entry_id                     6GIQ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
GA 23 6PH C 1 401 4013 6PH 6PH . 
HA 24 HEC C 1 402 4001 HEC HEM . 
IA 24 HEC C 1 403 4002 HEC HEM . 
JA 25 8PE C 1 404 4010 8PE 8PE . 
KA 26 CN5 C 1 405 4033 CN5 CN5 . 
LA 27 UQ6 C 1 406 4034 UQ6 UQ6 . 
MA 24 HEC D 1 401 4003 HEC HEM . 
NA 28 7PH D 1 402 4014 7PH 7PH . 
OA 29 FES E 1 301 4004 FES FES . 
PA 30 PCF I 1 101 4012 PCF PCF . 
QA 31 9PE N 1 401 4011 9PE 9PE . 
RA 23 6PH N 1 402 4113 6PH 6PH . 
SA 24 HEC N 1 403 4021 HEC HEM . 
TA 24 HEC N 1 404 4022 HEC HEM . 
UA 27 UQ6 N 1 405 4023 UQ6 UQ6 . 
VA 25 8PE N 1 406 4110 8PE 8PE . 
WA 31 9PE N 1 407 4111 9PE 9PE . 
XA 32 CN3 N 1 408 4131 CN3 CN3 . 
YA 24 HEC O 1 401 4023 HEC HEM . 
ZA 28 7PH P 1 301 4114 7PH 7PH . 
AB 29 FES P 1 302 4024 FES FES . 
BB 30 PCF T 1 101 4112 PCF PCF . 
CB 33 CU a 1 601 535 CU CU . 
DB 34 HEA a 1 602 538 HEA HEA . 
EB 34 HEA a 1 603 539 HEA HEA . 
FB 35 CUA b 1 301 252 CUA CUA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N PCF . . . BB 30 175.03 208.036 250.538 1 71.06 ? N PCF 101 T 1 
HETATM 2 P P PCF . . . BB 30 179.004 209.386 248.457 1 71.06 ? P PCF 101 T 1 
HETATM 3 O O11 PCF . . . BB 30 178.614 210.368 247.216 1 71.06 ? O11 PCF 101 T 1 
HETATM 4 O O12 PCF . . . BB 30 178.687 210.061 249.765 1 71.06 ? O12 PCF 101 T 1 
HETATM 5 O O13 PCF . . . BB 30 177.896 208.212 248.272 1 71.06 ? O13 PCF 101 T 1 
HETATM 6 O O14 PCF . . . BB 30 180.379 208.814 248.215 1 71.06 ? O14 PCF 101 T 1 
HETATM 7 C C11 PCF . . . BB 30 177.209 207.797 249.434 1 71.06 ? C11 PCF 101 T 1 
HETATM 8 C C12 PCF . . . BB 30 175.725 208.005 249.232 1 71.06 ? C12 PCF 101 T 1 
HETATM 9 C C13 PCF . . . BB 30 175.234 206.744 251.326 1 71.06 ? C13 PCF 101 T 1 
HETATM 10 C C14 PCF . . . BB 30 175.522 209.204 251.393 1 71.06 ? C14 PCF 101 T 1 
HETATM 11 C C15 PCF . . . BB 30 173.529 208.202 250.325 1 71.06 ? C15 PCF 101 T 1 
HETATM 12 C C1 PCF . . . BB 30 177.361 210.185 246.572 1 71.06 ? C1 PCF 101 T 1 
HETATM 13 C C2 PCF . . . BB 30 177.129 211.297 245.563 1 71.06 ? C2 PCF 101 T 1 
HETATM 14 C C3 PCF . . . BB 30 177.124 212.648 246.253 1 71.06 ? C3 PCF 101 T 1 
HETATM 15 O O31 PCF . . . BB 30 178.157 213.46 245.702 1 71.06 ? O31 PCF 101 T 1 
HETATM 16 O O32 PCF . . . BB 30 176.754 215.289 245.772 1 71.06 ? O32 PCF 101 T 1 
HETATM 17 C C31 PCF . . . BB 30 177.845 214.78 245.585 1 71.06 ? C31 PCF 101 T 1 
HETATM 18 C C32 PCF . . . BB 30 179.061 215.563 245.184 1 71.06 ? C32 PCF 101 T 1 
HETATM 19 C C33 PCF . . . BB 30 179.091 215.866 243.692 1 71.06 ? C33 PCF 101 T 1 
HETATM 20 C C34 PCF . . . BB 30 178.167 217 243.246 1 71.06 ? C34 PCF 101 T 1 
HETATM 21 C C35 PCF . . . BB 30 178.447 217.489 241.826 1 71.06 ? C35 PCF 101 T 1 
HETATM 22 C C36 PCF . . . BB 30 179.928 217.799 241.627 1 71.06 ? C36 PCF 101 T 1 
HETATM 23 C C37 PCF . . . BB 30 180.249 218.283 240.212 1 71.06 ? C37 PCF 101 T 1 
HETATM 24 C C38 PCF . . . BB 30 181.731 218.284 239.831 1 71.06 ? C38 PCF 101 T 1 
HETATM 25 C C39 PCF . . . BB 30 181.965 218.079 238.335 1 71.06 ? C39 PCF 101 T 1 
HETATM 26 C C40 PCF . . . BB 30 183.445 217.834 238.037 1 71.06 ? C40 PCF 101 T 1 
HETATM 27 C C41 PCF . . . BB 30 183.627 217.021 236.753 1 71.06 ? C41 PCF 101 T 1 
HETATM 28 O O21 PCF . . . BB 30 178.199 211.299 244.619 1 71.06 ? O21 PCF 101 T 1 
HETATM 29 O O22 PCF . . . BB 30 176.686 211.06 242.898 1 71.06 ? O22 PCF 101 T 1 
HETATM 30 C C21 PCF . . . BB 30 177.829 211.158 243.314 1 71.06 ? C21 PCF 101 T 1 
HETATM 31 C C22 PCF . . . BB 30 179.048 211.135 242.429 1 71.06 ? C22 PCF 101 T 1 
HETATM 32 C C23 PCF . . . BB 30 179.179 212.383 241.559 1 71.06 ? C23 PCF 101 T 1 
HETATM 33 C C24 PCF . . . BB 30 180.586 212.627 241.002 1 71.06 ? C24 PCF 101 T 1 
HETATM 34 C C25 PCF . . . BB 30 180.67 213.756 239.977 1 71.06 ? C25 PCF 101 T 1 
HETATM 35 C C26 PCF . . . BB 30 182.04 213.772 239.299 1 71.06 ? C26 PCF 101 T 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    395 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           35 
#