data_6GIQ
#
_model_server_result.job_id            t2PP9abo6m1MuiJlum78sg 
_model_server_result.datetime_utc      '2024-11-21 14:27:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6giq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"IA","auth_seq_id":403}' 
#
_entry.id    6GIQ 
#
_exptl.entry_id    6GIQ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          24 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6GIQ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GIQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    32-meric 
_pdbx_struct_assembly.oligomeric_count      32 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 24 HA N N 
? 24 IA N N 
? 24 MA N N 
? 24 SA N N 
? 24 TA N N 
? 24 YA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 164 E CYS 164 1_555 E SG CYS 180 E CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 F SG CYS 101 F CYS 101 1_555 F SG CYS 123 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 N SG CYS 164 P CYS 164 1_555 N SG CYS 180 P CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 O SG CYS 101 Q CYS 101 1_555 O SG CYS 123 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf5 DA SG CYS 27 j CYS 27 1_555 DA SG CYS 59 j CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 DA SG CYS 37 j CYS 37 1_555 DA SG CYS 48 j CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 C NE2 HIS 82 C HIS 82 1_555 HA FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc2 C NE2 HIS 96 C HIS 96 1_555 IA FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? 
metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 HA FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 IA FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc5 D NE2 HIS 105 D HIS 105 1_555 MA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc6 L NE2 HIS 82 N HIS 82 1_555 SA FE HEC . N HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc7 L NE2 HIS 96 N HIS 96 1_555 TA FE HEC . N HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? 
metalc ? metalc8 L NE2 HIS 183 N HIS 183 1_555 SA FE HEC . N HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
metalc ? metalc9 L NE2 HIS 197 N HIS 197 1_555 TA FE HEC . N HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc10 M NE2 HIS 105 O HIS 105 1_555 YA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc11 U NE2 HIS 62 a HIS 62 1_555 DB FE HEA . a HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? 
metalc ? metalc12 U ND1 HIS 241 a HIS 241 1_555 CB CU CU . a CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
metalc ? metalc13 U NE2 HIS 291 a HIS 291 1_555 CB CU CU . a CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc14 U NE2 HIS 378 a HIS 378 1_555 DB FE HEA . a HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 884 n n 
FE NB HEC sing 885 n n 
FE NC HEC sing 886 n n 
FE ND HEC sing 887 n n 
CHA C1A HEC doub 888 n n 
CHA C4D HEC sing 889 n n 
CHA HHA HEC sing 890 n n 
CHB C4A HEC doub 891 n n 
CHB C1B HEC sing 892 n n 
CHB HHB HEC sing 893 n n 
CHC C4B HEC doub 894 n n 
CHC C1C HEC sing 895 n n 
CHC HHC HEC sing 896 n n 
CHD C4C HEC doub 897 n n 
CHD C1D HEC sing 898 n n 
CHD HHD HEC sing 899 n n 
NA C1A HEC sing 900 n y 
NA C4A HEC sing 901 n y 
C1A C2A HEC sing 902 n y 
C2A C3A HEC doub 903 n y 
C2A CAA HEC sing 904 n n 
C3A C4A HEC sing 905 n y 
C3A CMA HEC sing 906 n n 
CMA HMA1 HEC sing 907 n n 
CMA HMA2 HEC sing 908 n n 
CMA HMA3 HEC sing 909 n n 
CAA CBA HEC sing 910 n n 
CAA HAA1 HEC sing 911 n n 
CAA HAA2 HEC sing 912 n n 
CBA CGA HEC sing 913 n n 
CBA HBA1 HEC sing 914 n n 
CBA HBA2 HEC sing 915 n n 
CGA O1A HEC doub 916 n n 
CGA O2A HEC sing 917 n n 
O2A H2A HEC sing 918 n n 
NB C1B HEC sing 919 n y 
NB C4B HEC sing 920 n y 
C1B C2B HEC doub 921 n y 
C2B C3B HEC sing 922 n y 
C2B CMB HEC sing 923 n n 
C3B C4B HEC sing 924 n y 
C3B CAB HEC doub 925 e n 
CMB HMB1 HEC sing 926 n n 
CMB HMB2 HEC sing 927 n n 
CMB HMB3 HEC sing 928 n n 
CAB CBB HEC sing 929 n n 
CAB HAB HEC sing 930 n n 
CBB HBB1 HEC sing 931 n n 
CBB HBB2 HEC sing 932 n n 
CBB HBB3 HEC sing 933 n n 
NC C1C HEC sing 934 n y 
NC C4C HEC sing 935 n y 
C1C C2C HEC doub 936 n y 
C2C C3C HEC sing 937 n y 
C2C CMC HEC sing 938 n n 
C3C C4C HEC sing 939 n y 
C3C CAC HEC doub 940 e n 
CMC HMC1 HEC sing 941 n n 
CMC HMC2 HEC sing 942 n n 
CMC HMC3 HEC sing 943 n n 
CAC CBC HEC sing 944 n n 
CAC HAC HEC sing 945 n n 
CBC HBC1 HEC sing 946 n n 
CBC HBC2 HEC sing 947 n n 
CBC HBC3 HEC sing 948 n n 
ND C1D HEC sing 949 n y 
ND C4D HEC sing 950 n y 
C1D C2D HEC doub 951 n y 
C2D C3D HEC sing 952 n y 
C2D CMD HEC sing 953 n n 
C3D C4D HEC doub 954 n y 
C3D CAD HEC sing 955 n n 
CMD HMD1 HEC sing 956 n n 
CMD HMD2 HEC sing 957 n n 
CMD HMD3 HEC sing 958 n n 
CAD CBD HEC sing 959 n n 
CAD HAD1 HEC sing 960 n n 
CAD HAD2 HEC sing 961 n n 
CBD CGD HEC sing 962 n n 
CBD HBD1 HEC sing 963 n n 
CBD HBD2 HEC sing 964 n n 
CGD O1D HEC doub 965 n n 
CGD O2D HEC sing 966 n n 
O2D H2D HEC sing 967 n n 
#
_atom_sites.entry_id                     6GIQ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
GA 23 6PH C 1 401 4013 6PH 6PH . 
HA 24 HEC C 1 402 4001 HEC HEM . 
IA 24 HEC C 1 403 4002 HEC HEM . 
JA 25 8PE C 1 404 4010 8PE 8PE . 
KA 26 CN5 C 1 405 4033 CN5 CN5 . 
LA 27 UQ6 C 1 406 4034 UQ6 UQ6 . 
MA 24 HEC D 1 401 4003 HEC HEM . 
NA 28 7PH D 1 402 4014 7PH 7PH . 
OA 29 FES E 1 301 4004 FES FES . 
PA 30 PCF I 1 101 4012 PCF PCF . 
QA 31 9PE N 1 401 4011 9PE 9PE . 
RA 23 6PH N 1 402 4113 6PH 6PH . 
SA 24 HEC N 1 403 4021 HEC HEM . 
TA 24 HEC N 1 404 4022 HEC HEM . 
UA 27 UQ6 N 1 405 4023 UQ6 UQ6 . 
VA 25 8PE N 1 406 4110 8PE 8PE . 
WA 31 9PE N 1 407 4111 9PE 9PE . 
XA 32 CN3 N 1 408 4131 CN3 CN3 . 
YA 24 HEC O 1 401 4023 HEC HEM . 
ZA 28 7PH P 1 301 4114 7PH 7PH . 
AB 29 FES P 1 302 4024 FES FES . 
BB 30 PCF T 1 101 4112 PCF PCF . 
CB 33 CU a 1 601 535 CU CU . 
DB 34 HEA a 1 602 538 HEA HEA . 
EB 34 HEA a 1 603 539 HEA HEA . 
FB 35 CUA b 1 301 252 CUA CUA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . IA 24 179.224 202.792 209.685 1 51.96 ? FE HEC 403 C 1 
HETATM 2 C CHA HEC . . . IA 24 179.641 199.535 209.578 1 51.96 ? CHA HEC 403 C 1 
HETATM 3 C CHB HEC . . . IA 24 182.581 203.286 209.13 1 51.96 ? CHB HEC 403 C 1 
HETATM 4 C CHC HEC . . . IA 24 178.836 206.274 209.565 1 51.96 ? CHC HEC 403 C 1 
HETATM 5 C CHD HEC . . . IA 24 175.966 202.534 210.311 1 51.96 ? CHD HEC 403 C 1 
HETATM 6 N NA HEC . . . IA 24 180.799 201.669 209.465 1 51.96 ? NA HEC 403 C 1 
HETATM 7 C C1A HEC . . . IA 24 180.725 200.323 209.349 1 51.96 ? C1A HEC 403 C 1 
HETATM 8 C C2A HEC . . . IA 24 181.987 199.86 208.975 1 51.96 ? C2A HEC 403 C 1 
HETATM 9 C C3A HEC . . . IA 24 182.796 200.91 208.862 1 51.96 ? C3A HEC 403 C 1 
HETATM 10 C C4A HEC . . . IA 24 182.059 202.035 209.16 1 51.96 ? C4A HEC 403 C 1 
HETATM 11 C CMA HEC . . . IA 24 184.238 200.899 208.48 1 51.96 ? CMA HEC 403 C 1 
HETATM 12 C CAA HEC . . . IA 24 182.431 198.464 208.733 1 51.96 ? CAA HEC 403 C 1 
HETATM 13 C CBA HEC . . . IA 24 182.456 198.229 207.233 1 51.96 ? CBA HEC 403 C 1 
HETATM 14 C CGA HEC . . . IA 24 181.035 198.19 206.78 1 51.96 ? CGA HEC 403 C 1 
HETATM 15 O O1A HEC . . . IA 24 180.707 198.525 205.629 1 51.96 ? O1A HEC 403 C 1 
HETATM 16 O O2A HEC . . . IA 24 180.163 197.803 207.568 1 51.96 ? O2A HEC 403 C 1 
HETATM 17 N NB HEC . . . IA 24 180.458 204.438 209.402 1 51.96 ? NB HEC 403 C 1 
HETATM 18 C C1B HEC . . . IA 24 181.758 204.38 209.202 1 51.96 ? C1B HEC 403 C 1 
HETATM 19 C C2B HEC . . . IA 24 182.285 205.649 209.05 1 51.96 ? C2B HEC 403 C 1 
HETATM 20 C C3B HEC . . . IA 24 181.27 206.506 209.157 1 51.96 ? C3B HEC 403 C 1 
HETATM 21 C C4B HEC . . . IA 24 180.078 205.706 209.397 1 51.96 ? C4B HEC 403 C 1 
HETATM 22 C CMB HEC . . . IA 24 183.718 205.951 208.814 1 51.96 ? CMB HEC 403 C 1 
HETATM 23 C CAB HEC . . . IA 24 181.358 207.949 209.071 1 51.96 ? CAB HEC 403 C 1 
HETATM 24 C CBB HEC . . . IA 24 182.499 208.498 209.429 1 51.96 ? CBB HEC 403 C 1 
HETATM 25 N NC HEC . . . IA 24 177.717 204.171 209.946 1 51.96 ? NC HEC 403 C 1 
HETATM 26 C C1C HEC . . . IA 24 177.734 205.501 209.773 1 51.96 ? C1C HEC 403 C 1 
HETATM 27 C C2C HEC . . . IA 24 176.443 205.962 209.838 1 51.96 ? C2C HEC 403 C 1 
HETATM 28 C C3C HEC . . . IA 24 175.636 204.905 210.036 1 51.96 ? C3C HEC 403 C 1 
HETATM 29 C C4C HEC . . . IA 24 176.44 203.78 210.108 1 51.96 ? C4C HEC 403 C 1 
HETATM 30 C CMC HEC . . . IA 24 175.989 207.362 209.698 1 51.96 ? CMC HEC 403 C 1 
HETATM 31 C CAC HEC . . . IA 24 174.202 204.969 210.171 1 51.96 ? CAC HEC 403 C 1 
HETATM 32 C CBC HEC . . . IA 24 173.751 205.919 210.96 1 51.96 ? CBC HEC 403 C 1 
HETATM 33 N ND HEC . . . IA 24 178.079 201.37 209.896 1 51.96 ? ND HEC 403 C 1 
HETATM 34 C C1D HEC . . . IA 24 176.785 201.442 210.15 1 51.96 ? C1D HEC 403 C 1 
HETATM 35 C C2D HEC . . . IA 24 176.228 200.124 210.254 1 51.96 ? C2D HEC 403 C 1 
HETATM 36 C C3D HEC . . . IA 24 177.229 199.275 210.054 1 51.96 ? C3D HEC 403 C 1 
HETATM 37 C C4D HEC . . . IA 24 178.409 200.09 209.829 1 51.96 ? C4D HEC 403 C 1 
HETATM 38 C CMD HEC . . . IA 24 174.795 199.834 210.539 1 51.96 ? CMD HEC 403 C 1 
HETATM 39 C CAD HEC . . . IA 24 177.15 197.787 210.08 1 51.96 ? CAD HEC 403 C 1 
HETATM 40 C CBD HEC . . . IA 24 176.906 197.241 208.696 1 51.96 ? CBD HEC 403 C 1 
HETATM 41 C CGD HEC . . . IA 24 176.021 196.052 208.834 1 51.96 ? CGD HEC 403 C 1 
HETATM 42 O O1D HEC . . . IA 24 176.546 194.94 208.828 1 51.96 ? O1D HEC 403 C 1 
HETATM 43 O O2D HEC . . . IA 24 174.789 196.161 208.96 1 51.96 ? O2D HEC 403 C 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    48 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#