data_6GIQ # _model_server_result.job_id nYi3TLW0XqJ68jUGYqJkfg _model_server_result.datetime_utc '2024-11-21 13:53:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6giq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JA","auth_seq_id":404}' # _entry.id 6GIQ # _exptl.entry_id 6GIQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 691.959 _entity.id 25 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GIQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GIQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 32-meric _pdbx_struct_assembly.oligomeric_count 32 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 25 JA N N ? 25 VA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 164 E CYS 164 1_555 E SG CYS 180 E CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 F SG CYS 101 F CYS 101 1_555 F SG CYS 123 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 N SG CYS 164 P CYS 164 1_555 N SG CYS 180 P CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 O SG CYS 101 Q CYS 101 1_555 O SG CYS 123 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 DA SG CYS 27 j CYS 27 1_555 DA SG CYS 59 j CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 DA SG CYS 37 j CYS 37 1_555 DA SG CYS 48 j CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 C NE2 HIS 82 C HIS 82 1_555 HA FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc2 C NE2 HIS 96 C HIS 96 1_555 IA FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 HA FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 IA FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc5 D NE2 HIS 105 D HIS 105 1_555 MA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc6 L NE2 HIS 82 N HIS 82 1_555 SA FE HEC . N HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc7 L NE2 HIS 96 N HIS 96 1_555 TA FE HEC . N HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc8 L NE2 HIS 183 N HIS 183 1_555 SA FE HEC . N HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc9 L NE2 HIS 197 N HIS 197 1_555 TA FE HEC . N HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc10 M NE2 HIS 105 O HIS 105 1_555 YA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc11 U NE2 HIS 62 a HIS 62 1_555 DB FE HEA . a HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc12 U ND1 HIS 241 a HIS 241 1_555 CB CU CU . a CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc13 U NE2 HIS 291 a HIS 291 1_555 CB CU CU . a CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc14 U NE2 HIS 378 a HIS 378 1_555 DB FE HEA . a HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? # _chem_comp.formula 'C37 H74 N O8 P' _chem_comp.formula_weight 691.959 _chem_comp.id 8PE _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLETHANOLAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P 8PE doub 195 n n O11 P 8PE sing 196 n n P O14 8PE sing 197 n n P O13 8PE sing 198 n n C12 N 8PE sing 199 n n N HN 8PE sing 200 n n N HNA 8PE sing 201 n n O11 C1 8PE sing 202 n n O13 C11 8PE sing 203 n n O14 HO14 8PE sing 204 n n C12 C11 8PE sing 205 n n C11 H11 8PE sing 206 n n C11 H11A 8PE sing 207 n n C12 H12 8PE sing 208 n n C12 H12A 8PE sing 209 n n C2 C1 8PE sing 210 n n C1 H1 8PE sing 211 n n C1 H1A 8PE sing 212 n n C3 C2 8PE sing 213 n n C2 O21 8PE sing 214 n n C2 H2 8PE sing 215 n n O31 C3 8PE sing 216 n n C3 H3 8PE sing 217 n n C3 H3A 8PE sing 218 n n C31 O31 8PE sing 219 n n O32 C31 8PE doub 220 n n C32 C31 8PE sing 221 n n C32 C33 8PE sing 222 n n C32 H32 8PE sing 223 n n C32 H32A 8PE sing 224 n n C33 C34 8PE sing 225 n n C33 H33 8PE sing 226 n n C33 H33A 8PE sing 227 n n C35 C34 8PE sing 228 n n C34 H34 8PE sing 229 n n C34 H34A 8PE sing 230 n n C35 C36 8PE sing 231 n n C35 H35 8PE sing 232 n n C35 H35A 8PE sing 233 n n C37 C36 8PE sing 234 n n C36 H36 8PE sing 235 n n C36 H36A 8PE sing 236 n n C38 C37 8PE sing 237 n n C37 H37 8PE sing 238 n n C37 H37A 8PE sing 239 n n C39 C38 8PE sing 240 n n C38 H38 8PE sing 241 n n C38 H38A 8PE sing 242 n n C39 C3A 8PE sing 243 n n C39 H39 8PE sing 244 n n C39 H39A 8PE sing 245 n n C3B C3A 8PE sing 246 n n C3A H3AA 8PE sing 247 n n C3A H3AB 8PE sing 248 n n C3C C3B 8PE sing 249 n n C3B H3B 8PE sing 250 n n C3B H3BA 8PE sing 251 n n C3C C3D 8PE sing 252 n n C3C H3C 8PE sing 253 n n C3C H3CA 8PE sing 254 n n C3E C3D 8PE sing 255 n n C3D H3D 8PE sing 256 n n C3D H3DA 8PE sing 257 n n C3F C3E 8PE sing 258 n n C3E H3E 8PE sing 259 n n C3E H3EA 8PE sing 260 n n C3G C3F 8PE sing 261 n n C3F H3F 8PE sing 262 n n C3F H3FA 8PE sing 263 n n C3G C3H 8PE sing 264 n n C3G H3G 8PE sing 265 n n C3G H3GA 8PE sing 266 n n C3I C3H 8PE sing 267 n n C3H H3H 8PE sing 268 n n C3H H3HA 8PE sing 269 n n C3I H3I 8PE sing 270 n n C3I H3IA 8PE sing 271 n n C3I H3IB 8PE sing 272 n n O21 C21 8PE sing 273 n n C21 O22 8PE doub 274 n n C21 C22 8PE sing 275 n n C23 C22 8PE sing 276 n n C22 H22 8PE sing 277 n n C22 H22A 8PE sing 278 n n C23 C24 8PE sing 279 n n C23 H23 8PE sing 280 n n C23 H23A 8PE sing 281 n n C25 C24 8PE sing 282 n n C24 H24 8PE sing 283 n n C24 H24A 8PE sing 284 n n C25 C26 8PE sing 285 n n C25 H25 8PE sing 286 n n C25 H25A 8PE sing 287 n n C27 C26 8PE sing 288 n n C26 H26 8PE sing 289 n n C26 H26A 8PE sing 290 n n C27 C28 8PE sing 291 n n C27 H27 8PE sing 292 n n C27 H27A 8PE sing 293 n n C29 C28 8PE sing 294 n n C28 H28 8PE sing 295 n n C28 H28A 8PE sing 296 n n C29 C2A 8PE sing 297 n n C29 H29 8PE sing 298 n n C29 H29A 8PE sing 299 n n C2B C2A 8PE sing 300 n n C2A H2A 8PE sing 301 n n C2A H2AA 8PE sing 302 n n C2C C2B 8PE sing 303 n n C2B H2B 8PE sing 304 n n C2B H2BA 8PE sing 305 n n C2C C2D 8PE sing 306 n n C2C H2C 8PE sing 307 n n C2C H2CA 8PE sing 308 n n C2E C2D 8PE sing 309 n n C2D H2D 8PE sing 310 n n C2D H2DA 8PE sing 311 n n C2E H2E 8PE sing 312 n n C2E H2EA 8PE sing 313 n n C2E H2EB 8PE sing 314 n n # _atom_sites.entry_id 6GIQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code GA 23 6PH C 1 401 4013 6PH 6PH . HA 24 HEC C 1 402 4001 HEC HEM . IA 24 HEC C 1 403 4002 HEC HEM . JA 25 8PE C 1 404 4010 8PE 8PE . KA 26 CN5 C 1 405 4033 CN5 CN5 . LA 27 UQ6 C 1 406 4034 UQ6 UQ6 . MA 24 HEC D 1 401 4003 HEC HEM . NA 28 7PH D 1 402 4014 7PH 7PH . OA 29 FES E 1 301 4004 FES FES . PA 30 PCF I 1 101 4012 PCF PCF . QA 31 9PE N 1 401 4011 9PE 9PE . RA 23 6PH N 1 402 4113 6PH 6PH . SA 24 HEC N 1 403 4021 HEC HEM . TA 24 HEC N 1 404 4022 HEC HEM . UA 27 UQ6 N 1 405 4023 UQ6 UQ6 . VA 25 8PE N 1 406 4110 8PE 8PE . WA 31 9PE N 1 407 4111 9PE 9PE . XA 32 CN3 N 1 408 4131 CN3 CN3 . YA 24 HEC O 1 401 4023 HEC HEM . ZA 28 7PH P 1 301 4114 7PH 7PH . AB 29 FES P 1 302 4024 FES FES . BB 30 PCF T 1 101 4112 PCF PCF . CB 33 CU a 1 601 535 CU CU . DB 34 HEA a 1 602 538 HEA HEA . EB 34 HEA a 1 603 539 HEA HEA . FB 35 CUA b 1 301 252 CUA CUA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 8PE . . . JA 25 169.771 191.781 197.13 1 59.23 ? P 8PE 404 C 1 HETATM 2 N N 8PE . . . JA 25 169.464 186.962 195.579 1 59.23 ? N 8PE 404 C 1 HETATM 3 O O11 8PE . . . JA 25 169.914 193.141 196.3 1 59.23 ? O11 8PE 404 C 1 HETATM 4 O O12 8PE . . . JA 25 170.65 191.85 198.305 1 59.23 ? O12 8PE 404 C 1 HETATM 5 O O13 8PE . . . JA 25 170.184 190.515 196.24 1 59.23 ? O13 8PE 404 C 1 HETATM 6 O O14 8PE . . . JA 25 168.243 191.628 197.587 1 59.23 ? O14 8PE 404 C 1 HETATM 7 C C11 8PE . . . JA 25 169.45 189.293 196.277 1 59.23 ? C11 8PE 404 C 1 HETATM 8 C C12 8PE . . . JA 25 170.295 188.164 195.686 1 59.23 ? C12 8PE 404 C 1 HETATM 9 C C1 8PE . . . JA 25 168.834 194.067 196.228 1 59.23 ? C1 8PE 404 C 1 HETATM 10 C C2 8PE . . . JA 25 169.348 195.494 196.027 1 59.23 ? C2 8PE 404 C 1 HETATM 11 C C3 8PE . . . JA 25 170.665 195.686 196.786 1 59.23 ? C3 8PE 404 C 1 HETATM 12 O O31 8PE . . . JA 25 171.024 197.089 196.88 1 59.23 ? O31 8PE 404 C 1 HETATM 13 O O32 8PE . . . JA 25 169.549 197.581 198.477 1 59.23 ? O32 8PE 404 C 1 HETATM 14 C C31 8PE . . . JA 25 170.596 197.814 197.93 1 59.23 ? C31 8PE 404 C 1 HETATM 15 C C32 8PE . . . JA 25 171.416 198.953 198.454 1 59.23 ? C32 8PE 404 C 1 HETATM 16 C C33 8PE . . . JA 25 170.478 199.906 199.188 1 59.23 ? C33 8PE 404 C 1 HETATM 17 C C34 8PE . . . JA 25 169.911 200.9 198.184 1 59.23 ? C34 8PE 404 C 1 HETATM 18 C C35 8PE . . . JA 25 171.01 201.906 197.857 1 59.23 ? C35 8PE 404 C 1 HETATM 19 C C36 8PE . . . JA 25 170.353 203.26 197.608 1 59.23 ? C36 8PE 404 C 1 HETATM 20 C C37 8PE . . . JA 25 171.344 204.37 197.939 1 59.23 ? C37 8PE 404 C 1 HETATM 21 C C38 8PE . . . JA 25 170.657 205.697 197.639 1 59.23 ? C38 8PE 404 C 1 HETATM 22 C C39 8PE . . . JA 25 170.803 206.628 198.839 1 59.23 ? C39 8PE 404 C 1 HETATM 23 C C3A 8PE . . . JA 25 169.725 207.706 198.756 1 59.23 ? C3A 8PE 404 C 1 HETATM 24 C C3B 8PE . . . JA 25 169.327 208.105 200.171 1 59.23 ? C3B 8PE 404 C 1 HETATM 25 C C3C 8PE . . . JA 25 168.585 206.927 200.789 1 59.23 ? C3C 8PE 404 C 1 HETATM 26 C C3D 8PE . . . JA 25 167.932 207.354 202.097 1 59.23 ? C3D 8PE 404 C 1 HETATM 27 C C3E 8PE . . . JA 25 168.99 207.851 203.076 1 59.23 ? C3E 8PE 404 C 1 HETATM 28 C C3F 8PE . . . JA 25 168.329 207.947 204.445 1 59.23 ? C3F 8PE 404 C 1 HETATM 29 C C3G 8PE . . . JA 25 168.987 209.062 205.246 1 59.23 ? C3G 8PE 404 C 1 HETATM 30 C C3H 8PE . . . JA 25 168.18 209.242 206.527 1 59.23 ? C3H 8PE 404 C 1 HETATM 31 C C3I 8PE . . . JA 25 168.026 210.729 206.834 1 59.23 ? C3I 8PE 404 C 1 HETATM 32 O O21 8PE . . . JA 25 169.537 195.802 194.627 1 59.23 ? O21 8PE 404 C 1 HETATM 33 O O22 8PE . . . JA 25 167.431 196.391 194.376 1 59.23 ? O22 8PE 404 C 1 HETATM 34 C C21 8PE . . . JA 25 168.58 196.537 194.047 1 59.23 ? C21 8PE 404 C 1 HETATM 35 C C22 8PE . . . JA 25 168.93 197.535 192.979 1 59.23 ? C22 8PE 404 C 1 HETATM 36 C C23 8PE . . . JA 25 169.931 198.556 193.513 1 59.23 ? C23 8PE 404 C 1 HETATM 37 C C24 8PE . . . JA 25 169.871 199.793 192.62 1 59.23 ? C24 8PE 404 C 1 HETATM 38 C C25 8PE . . . JA 25 170.615 200.954 193.278 1 59.23 ? C25 8PE 404 C 1 HETATM 39 C C26 8PE . . . JA 25 170.242 202.244 192.548 1 59.23 ? C26 8PE 404 C 1 HETATM 40 C C27 8PE . . . JA 25 170.528 203.455 193.436 1 59.23 ? C27 8PE 404 C 1 HETATM 41 C C28 8PE . . . JA 25 169.385 204.464 193.292 1 59.23 ? C28 8PE 404 C 1 HETATM 42 C C29 8PE . . . JA 25 169.839 205.839 193.787 1 59.23 ? C29 8PE 404 C 1 HETATM 43 C C2A 8PE . . . JA 25 168.684 206.83 193.659 1 59.23 ? C2A 8PE 404 C 1 HETATM 44 C C2B 8PE . . . JA 25 169.209 208.144 193.083 1 59.23 ? C2B 8PE 404 C 1 HETATM 45 C C2C 8PE . . . JA 25 168.057 208.874 192.388 1 59.23 ? C2C 8PE 404 C 1 HETATM 46 C C2D 8PE . . . JA 25 168.6 209.882 191.374 1 59.23 ? C2D 8PE 404 C 1 HETATM 47 C C2E 8PE . . . JA 25 167.489 210.264 190.395 1 59.23 ? C2E 8PE 404 C 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 391 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 47 #