data_6GIQ # _model_server_result.job_id I2LtYlKBewMmoVZM94kcbg _model_server_result.datetime_utc '2024-11-21 14:10:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6giq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"TA","auth_seq_id":404}' # _entry.id 6GIQ # _exptl.entry_id 6GIQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 24 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GIQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GIQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 32-meric _pdbx_struct_assembly.oligomeric_count 32 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 24 HA N N ? 24 IA N N ? 24 MA N N ? 24 SA N N ? 24 TA N N ? 24 YA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 164 E CYS 164 1_555 E SG CYS 180 E CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 F SG CYS 101 F CYS 101 1_555 F SG CYS 123 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 N SG CYS 164 P CYS 164 1_555 N SG CYS 180 P CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 O SG CYS 101 Q CYS 101 1_555 O SG CYS 123 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 DA SG CYS 27 j CYS 27 1_555 DA SG CYS 59 j CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 DA SG CYS 37 j CYS 37 1_555 DA SG CYS 48 j CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 C NE2 HIS 82 C HIS 82 1_555 HA FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc2 C NE2 HIS 96 C HIS 96 1_555 IA FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 HA FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 IA FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc5 D NE2 HIS 105 D HIS 105 1_555 MA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc6 L NE2 HIS 82 N HIS 82 1_555 SA FE HEC . N HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc7 L NE2 HIS 96 N HIS 96 1_555 TA FE HEC . N HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc8 L NE2 HIS 183 N HIS 183 1_555 SA FE HEC . N HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc9 L NE2 HIS 197 N HIS 197 1_555 TA FE HEC . N HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc10 M NE2 HIS 105 O HIS 105 1_555 YA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc11 U NE2 HIS 62 a HIS 62 1_555 DB FE HEA . a HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc12 U ND1 HIS 241 a HIS 241 1_555 CB CU CU . a CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc13 U NE2 HIS 291 a HIS 291 1_555 CB CU CU . a CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc14 U NE2 HIS 378 a HIS 378 1_555 DB FE HEA . a HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 884 n n FE NB HEC sing 885 n n FE NC HEC sing 886 n n FE ND HEC sing 887 n n CHA C1A HEC doub 888 n n CHA C4D HEC sing 889 n n CHA HHA HEC sing 890 n n CHB C4A HEC doub 891 n n CHB C1B HEC sing 892 n n CHB HHB HEC sing 893 n n CHC C4B HEC doub 894 n n CHC C1C HEC sing 895 n n CHC HHC HEC sing 896 n n CHD C4C HEC doub 897 n n CHD C1D HEC sing 898 n n CHD HHD HEC sing 899 n n NA C1A HEC sing 900 n y NA C4A HEC sing 901 n y C1A C2A HEC sing 902 n y C2A C3A HEC doub 903 n y C2A CAA HEC sing 904 n n C3A C4A HEC sing 905 n y C3A CMA HEC sing 906 n n CMA HMA1 HEC sing 907 n n CMA HMA2 HEC sing 908 n n CMA HMA3 HEC sing 909 n n CAA CBA HEC sing 910 n n CAA HAA1 HEC sing 911 n n CAA HAA2 HEC sing 912 n n CBA CGA HEC sing 913 n n CBA HBA1 HEC sing 914 n n CBA HBA2 HEC sing 915 n n CGA O1A HEC doub 916 n n CGA O2A HEC sing 917 n n O2A H2A HEC sing 918 n n NB C1B HEC sing 919 n y NB C4B HEC sing 920 n y C1B C2B HEC doub 921 n y C2B C3B HEC sing 922 n y C2B CMB HEC sing 923 n n C3B C4B HEC sing 924 n y C3B CAB HEC doub 925 e n CMB HMB1 HEC sing 926 n n CMB HMB2 HEC sing 927 n n CMB HMB3 HEC sing 928 n n CAB CBB HEC sing 929 n n CAB HAB HEC sing 930 n n CBB HBB1 HEC sing 931 n n CBB HBB2 HEC sing 932 n n CBB HBB3 HEC sing 933 n n NC C1C HEC sing 934 n y NC C4C HEC sing 935 n y C1C C2C HEC doub 936 n y C2C C3C HEC sing 937 n y C2C CMC HEC sing 938 n n C3C C4C HEC sing 939 n y C3C CAC HEC doub 940 e n CMC HMC1 HEC sing 941 n n CMC HMC2 HEC sing 942 n n CMC HMC3 HEC sing 943 n n CAC CBC HEC sing 944 n n CAC HAC HEC sing 945 n n CBC HBC1 HEC sing 946 n n CBC HBC2 HEC sing 947 n n CBC HBC3 HEC sing 948 n n ND C1D HEC sing 949 n y ND C4D HEC sing 950 n y C1D C2D HEC doub 951 n y C2D C3D HEC sing 952 n y C2D CMD HEC sing 953 n n C3D C4D HEC doub 954 n y C3D CAD HEC sing 955 n n CMD HMD1 HEC sing 956 n n CMD HMD2 HEC sing 957 n n CMD HMD3 HEC sing 958 n n CAD CBD HEC sing 959 n n CAD HAD1 HEC sing 960 n n CAD HAD2 HEC sing 961 n n CBD CGD HEC sing 962 n n CBD HBD1 HEC sing 963 n n CBD HBD2 HEC sing 964 n n CGD O1D HEC doub 965 n n CGD O2D HEC sing 966 n n O2D H2D HEC sing 967 n n # _atom_sites.entry_id 6GIQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code GA 23 6PH C 1 401 4013 6PH 6PH . HA 24 HEC C 1 402 4001 HEC HEM . IA 24 HEC C 1 403 4002 HEC HEM . JA 25 8PE C 1 404 4010 8PE 8PE . KA 26 CN5 C 1 405 4033 CN5 CN5 . LA 27 UQ6 C 1 406 4034 UQ6 UQ6 . MA 24 HEC D 1 401 4003 HEC HEM . NA 28 7PH D 1 402 4014 7PH 7PH . OA 29 FES E 1 301 4004 FES FES . PA 30 PCF I 1 101 4012 PCF PCF . QA 31 9PE N 1 401 4011 9PE 9PE . RA 23 6PH N 1 402 4113 6PH 6PH . SA 24 HEC N 1 403 4021 HEC HEM . TA 24 HEC N 1 404 4022 HEC HEM . UA 27 UQ6 N 1 405 4023 UQ6 UQ6 . VA 25 8PE N 1 406 4110 8PE 8PE . WA 31 9PE N 1 407 4111 9PE 9PE . XA 32 CN3 N 1 408 4131 CN3 CN3 . YA 24 HEC O 1 401 4023 HEC HEM . ZA 28 7PH P 1 301 4114 7PH 7PH . AB 29 FES P 1 302 4024 FES FES . BB 30 PCF T 1 101 4112 PCF PCF . CB 33 CU a 1 601 535 CU CU . DB 34 HEA a 1 602 538 HEA HEA . EB 34 HEA a 1 603 539 HEA HEA . FB 35 CUA b 1 301 252 CUA CUA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . TA 24 203.651 209.043 231.077 1 51.94 ? FE HEC 404 N 1 HETATM 2 C CHA HEC . . . TA 24 203.025 206.525 233.192 1 51.94 ? CHA HEC 404 N 1 HETATM 3 C CHB HEC . . . TA 24 200.265 209.89 231.065 1 51.94 ? CHB HEC 404 N 1 HETATM 4 C CHC HEC . . . TA 24 204.283 211.973 229.237 1 51.94 ? CHC HEC 404 N 1 HETATM 5 C CHD HEC . . . TA 24 206.848 208.127 230.671 1 51.94 ? CHD HEC 404 N 1 HETATM 6 N NA HEC . . . TA 24 201.978 208.339 231.886 1 51.94 ? NA HEC 404 N 1 HETATM 7 C C1A HEC . . . TA 24 201.979 207.335 232.831 1 51.94 ? C1A HEC 404 N 1 HETATM 8 C C2A HEC . . . TA 24 200.695 207.244 233.402 1 51.94 ? C2A HEC 404 N 1 HETATM 9 C C3A HEC . . . TA 24 199.919 208.18 232.81 1 51.94 ? C3A HEC 404 N 1 HETATM 10 C C4A HEC . . . TA 24 200.711 208.861 231.866 1 51.94 ? C4A HEC 404 N 1 HETATM 11 C CMA HEC . . . TA 24 198.467 208.445 233.109 1 51.94 ? CMA HEC 404 N 1 HETATM 12 C CAA HEC . . . TA 24 200.253 206.274 234.47 1 51.94 ? CAA HEC 404 N 1 HETATM 13 C CBA HEC . . . TA 24 200.367 206.882 235.869 1 51.94 ? CBA HEC 404 N 1 HETATM 14 C CGA HEC . . . TA 24 201.821 207.041 236.21 1 51.94 ? CGA HEC 404 N 1 HETATM 15 O O1A HEC . . . TA 24 202.218 208.101 236.741 1 51.94 ? O1A HEC 404 N 1 HETATM 16 O O2A HEC . . . TA 24 202.632 206.12 235.964 1 51.94 ? O2A HEC 404 N 1 HETATM 17 N NB HEC . . . TA 24 202.484 210.622 230.297 1 51.94 ? NB HEC 404 N 1 HETATM 18 C C1B HEC . . . TA 24 201.155 210.747 230.413 1 51.94 ? C1B HEC 404 N 1 HETATM 19 C C2B HEC . . . TA 24 200.708 211.933 229.772 1 51.94 ? C2B HEC 404 N 1 HETATM 20 C C3B HEC . . . TA 24 201.813 212.54 229.254 1 51.94 ? C3B HEC 404 N 1 HETATM 21 C C4B HEC . . . TA 24 202.965 211.671 229.602 1 51.94 ? C4B HEC 404 N 1 HETATM 22 C CMB HEC . . . TA 24 199.28 212.417 229.69 1 51.94 ? CMB HEC 404 N 1 HETATM 23 C CAB HEC . . . TA 24 201.851 213.8 228.49 1 51.94 ? CAB HEC 404 N 1 HETATM 24 C CBB HEC . . . TA 24 200.951 214.004 227.531 1 51.94 ? CBB HEC 404 N 1 HETATM 25 N NC HEC . . . TA 24 205.263 209.892 230.068 1 51.94 ? NC HEC 404 N 1 HETATM 26 C C1C HEC . . . TA 24 205.355 211.126 229.493 1 51.94 ? C1C HEC 404 N 1 HETATM 27 C C2C HEC . . . TA 24 206.706 211.403 229.222 1 51.94 ? C2C HEC 404 N 1 HETATM 28 C C3C HEC . . . TA 24 207.439 210.301 229.636 1 51.94 ? C3C HEC 404 N 1 HETATM 29 C C4C HEC . . . TA 24 206.516 209.353 230.155 1 51.94 ? C4C HEC 404 N 1 HETATM 30 C CMC HEC . . . TA 24 207.252 212.665 228.595 1 51.94 ? CMC HEC 404 N 1 HETATM 31 C CAC HEC . . . TA 24 208.9 210.142 229.538 1 51.94 ? CAC HEC 404 N 1 HETATM 32 C CBC HEC . . . TA 24 209.563 210.773 228.575 1 51.94 ? CBC HEC 404 N 1 HETATM 33 N ND HEC . . . TA 24 204.683 207.647 231.768 1 51.94 ? ND HEC 404 N 1 HETATM 34 C C1D HEC . . . TA 24 205.98 207.414 231.5 1 51.94 ? C1D HEC 404 N 1 HETATM 35 C C2D HEC . . . TA 24 206.439 206.231 232.236 1 51.94 ? C2D HEC 404 N 1 HETATM 36 C C3D HEC . . . TA 24 205.384 205.779 232.935 1 51.94 ? C3D HEC 404 N 1 HETATM 37 C C4D HEC . . . TA 24 204.279 206.698 232.631 1 51.94 ? C4D HEC 404 N 1 HETATM 38 C CMD HEC . . . TA 24 207.826 205.644 232.201 1 51.94 ? CMD HEC 404 N 1 HETATM 39 C CAD HEC . . . TA 24 205.358 204.583 233.86 1 51.94 ? CAD HEC 404 N 1 HETATM 40 C CBD HEC . . . TA 24 206.421 204.735 234.956 1 51.94 ? CBD HEC 404 N 1 HETATM 41 C CGD HEC . . . TA 24 206.218 203.737 236.07 1 51.94 ? CGD HEC 404 N 1 HETATM 42 O O1D HEC . . . TA 24 205.069 203.311 236.326 1 51.94 ? O1D HEC 404 N 1 HETATM 43 O O2D HEC . . . TA 24 207.197 203.336 236.748 1 51.94 ? O2D HEC 404 N 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 54 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #