data_6GIQ
#
_model_server_result.job_id            Ra3EEb8nPkfz51youvufkA 
_model_server_result.datetime_utc      '2024-11-23 09:47:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6giq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"KA","auth_seq_id":405}' 
#
_entry.id    6GIQ 
#
_exptl.entry_id    6GIQ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              634.631 
_entity.id                          26 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(5S,11R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6GIQ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GIQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    32-meric 
_pdbx_struct_assembly.oligomeric_count      32 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      26 
_struct_asym.id                             KA 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 164 E CYS 164 1_555 E SG CYS 180 E CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 F SG CYS 101 F CYS 101 1_555 F SG CYS 123 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 N SG CYS 164 P CYS 164 1_555 N SG CYS 180 P CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 O SG CYS 101 Q CYS 101 1_555 O SG CYS 123 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf5 DA SG CYS 27 j CYS 27 1_555 DA SG CYS 59 j CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 DA SG CYS 37 j CYS 37 1_555 DA SG CYS 48 j CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 C NE2 HIS 82 C HIS 82 1_555 HA FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc2 C NE2 HIS 96 C HIS 96 1_555 IA FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? 
metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 HA FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 IA FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc5 D NE2 HIS 105 D HIS 105 1_555 MA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc6 L NE2 HIS 82 N HIS 82 1_555 SA FE HEC . N HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc7 L NE2 HIS 96 N HIS 96 1_555 TA FE HEC . N HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? 
metalc ? metalc8 L NE2 HIS 183 N HIS 183 1_555 SA FE HEC . N HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
metalc ? metalc9 L NE2 HIS 197 N HIS 197 1_555 TA FE HEC . N HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc10 M NE2 HIS 105 O HIS 105 1_555 YA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc11 U NE2 HIS 62 a HIS 62 1_555 DB FE HEA . a HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? 
metalc ? metalc12 U ND1 HIS 241 a HIS 241 1_555 CB CU CU . a CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
metalc ? metalc13 U NE2 HIS 291 a HIS 291 1_555 CB CU CU . a CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc14 U NE2 HIS 378 a HIS 378 1_555 DB FE HEA . a HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? 
#
_chem_comp.formula           'C26 H52 O13 P2' 
_chem_comp.formula_weight    634.631 
_chem_comp.id                CN5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(5S,11R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     CARDIOLIPIN 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O14 P CN5 doub 605 n n 
O12 P CN5 sing 606 n n 
P O11 CN5 sing 607 n n 
P O13 CN5 sing 608 n n 
O11 C1 CN5 sing 609 n n 
O12 HO12 CN5 sing 610 n n 
O13 CC CN5 sing 611 n n 
C2 C1 CN5 sing 612 n n 
C1 H1 CN5 sing 613 n n 
C1 H1A CN5 sing 614 n n 
C2 C3 CN5 sing 615 n n 
C2 H2 CN5 sing 616 n n 
C2 H2A CN5 sing 617 n n 
O31 C3 CN5 sing 618 n n 
C3 H3 CN5 sing 619 n n 
C3 H3A CN5 sing 620 n n 
O31 C31 CN5 sing 621 n n 
C31 O32 CN5 doub 622 n n 
C32 C31 CN5 sing 623 n n 
C33 C32 CN5 sing 624 n n 
C32 H32 CN5 sing 625 n n 
C32 H32A CN5 sing 626 n n 
C33 C34 CN5 sing 627 n n 
C33 H33 CN5 sing 628 n n 
C33 H33A CN5 sing 629 n n 
C35 C34 CN5 sing 630 n n 
C34 H34 CN5 sing 631 n n 
C34 H34A CN5 sing 632 n n 
C35 C36 CN5 sing 633 n n 
C35 H35 CN5 sing 634 n n 
C35 H35A CN5 sing 635 n n 
C37 C36 CN5 sing 636 n n 
C36 H36 CN5 sing 637 n n 
C36 H36A CN5 sing 638 n n 
C37 C38 CN5 sing 639 n n 
C37 H37 CN5 sing 640 n n 
C37 H37A CN5 sing 641 n n 
C39 C38 CN5 sing 642 n n 
C38 H38 CN5 sing 643 n n 
C38 H38A CN5 sing 644 n n 
C39 C3A CN5 sing 645 n n 
C39 H39 CN5 sing 646 n n 
C39 H39A CN5 sing 647 n n 
C3B C3A CN5 sing 648 n n 
C3A H3AA CN5 sing 649 n n 
C3A H3AB CN5 sing 650 n n 
C3C C3B CN5 sing 651 n n 
C3B H3B CN5 sing 652 n n 
C3B H3BA CN5 sing 653 n n 
C3D C3C CN5 sing 654 n n 
C3C H3C CN5 sing 655 n n 
C3C H3CA CN5 sing 656 n n 
C3E C3D CN5 sing 657 n n 
C3D H3D CN5 sing 658 n n 
C3D H3DA CN5 sing 659 n n 
C3F C3E CN5 sing 660 n n 
C3E H3E CN5 sing 661 n n 
C3E H3EA CN5 sing 662 n n 
C3F H3F CN5 sing 663 n n 
C3F H3FA CN5 sing 664 n n 
C3F H3FB CN5 sing 665 n n 
O3' P' CN5 sing 666 n n 
O1' P' CN5 sing 667 n n 
P' O2' CN5 doub 668 n n 
P' O4' CN5 sing 669 n n 
C1' O1' CN5 sing 670 n n 
CA O3' CN5 sing 671 n n 
O4' HO4' CN5 sing 672 n n 
C2' C1' CN5 sing 673 n n 
C1' H1' CN5 sing 674 n n 
C1' "H1'A" CN5 sing 675 n n 
C2' C3' CN5 sing 676 n n 
C2' H2' CN5 sing 677 n n 
C2' "H2'A" CN5 sing 678 n n 
O41 C3' CN5 sing 679 n n 
C3' H3' CN5 sing 680 n n 
C3' "H3'A" CN5 sing 681 n n 
C41 O41 CN5 sing 682 n n 
O42 C41 CN5 doub 683 n n 
C42 C41 CN5 sing 684 n n 
C42 H42 CN5 sing 685 n n 
C42 H42A CN5 sing 686 n n 
C42 H42B CN5 sing 687 n n 
CB CA CN5 sing 688 n n 
CA HA CN5 sing 689 n n 
CA HAA CN5 sing 690 n n 
OA CB CN5 sing 691 n n 
CC CB CN5 sing 692 n n 
CB HB CN5 sing 693 n n 
OA HOA CN5 sing 694 n n 
CC HC CN5 sing 695 n n 
CC HCA CN5 sing 696 n n 
#
_atom_sites.entry_id                     6GIQ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
GA 23 6PH C 1 401 4013 6PH 6PH . 
HA 24 HEC C 1 402 4001 HEC HEM . 
IA 24 HEC C 1 403 4002 HEC HEM . 
JA 25 8PE C 1 404 4010 8PE 8PE . 
KA 26 CN5 C 1 405 4033 CN5 CN5 . 
LA 27 UQ6 C 1 406 4034 UQ6 UQ6 . 
MA 24 HEC D 1 401 4003 HEC HEM . 
NA 28 7PH D 1 402 4014 7PH 7PH . 
OA 29 FES E 1 301 4004 FES FES . 
PA 30 PCF I 1 101 4012 PCF PCF . 
QA 31 9PE N 1 401 4011 9PE 9PE . 
RA 23 6PH N 1 402 4113 6PH 6PH . 
SA 24 HEC N 1 403 4021 HEC HEM . 
TA 24 HEC N 1 404 4022 HEC HEM . 
UA 27 UQ6 N 1 405 4023 UQ6 UQ6 . 
VA 25 8PE N 1 406 4110 8PE 8PE . 
WA 31 9PE N 1 407 4111 9PE 9PE . 
XA 32 CN3 N 1 408 4131 CN3 CN3 . 
YA 24 HEC O 1 401 4023 HEC HEM . 
ZA 28 7PH P 1 301 4114 7PH 7PH . 
AB 29 FES P 1 302 4024 FES FES . 
BB 30 PCF T 1 101 4112 PCF PCF . 
CB 33 CU a 1 601 535 CU CU . 
DB 34 HEA a 1 602 538 HEA HEA . 
EB 34 HEA a 1 603 539 HEA HEA . 
FB 35 CUA b 1 301 252 CUA CUA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P CN5 . . . KA 26 193.569 196.988 225.158 1 77.96 ? P CN5 405 C 1 
HETATM 2 O O11 CN5 . . . KA 26 193.062 197.958 223.871 1 77.96 ? O11 CN5 405 C 1 
HETATM 3 O O12 CN5 . . . KA 26 194.502 195.968 224.649 1 77.96 ? O12 CN5 405 C 1 
HETATM 4 O O13 CN5 . . . KA 26 192.119 196.326 225.646 1 77.96 ? O13 CN5 405 C 1 
HETATM 5 O O14 CN5 . . . KA 26 193.938 197.99 226.229 1 77.96 ? O14 CN5 405 C 1 
HETATM 6 C C1 CN5 . . . KA 26 192.144 198.938 224.133 1 77.96 ? C1 CN5 405 C 1 
HETATM 7 C C2 CN5 . . . KA 26 192.876 200.262 223.996 1 77.96 ? C2 CN5 405 C 1 
HETATM 8 C C3 CN5 . . . KA 26 191.942 201.409 224.287 1 77.96 ? C3 CN5 405 C 1 
HETATM 9 O O31 CN5 . . . KA 26 192.652 202.369 225.069 1 77.96 ? O31 CN5 405 C 1 
HETATM 10 O O32 CN5 . . . KA 26 191.55 204.116 224.282 1 77.96 ? O32 CN5 405 C 1 
HETATM 11 C C31 CN5 . . . KA 26 192.014 203.531 225.244 1 77.96 ? C31 CN5 405 C 1 
HETATM 12 C C32 CN5 . . . KA 26 191.885 204.058 226.649 1 77.96 ? C32 CN5 405 C 1 
HETATM 13 C C33 CN5 . . . KA 26 190.985 205.291 226.618 1 77.96 ? C33 CN5 405 C 1 
HETATM 14 C C34 CN5 . . . KA 26 189.95 205.257 227.723 1 77.96 ? C34 CN5 405 C 1 
HETATM 15 C C35 CN5 . . . KA 26 190.454 205.97 228.954 1 77.96 ? C35 CN5 405 C 1 
HETATM 16 C C36 CN5 . . . KA 26 189.334 206.8 229.543 1 77.96 ? C36 CN5 405 C 1 
HETATM 17 C C37 CN5 . . . KA 26 189.899 207.794 230.546 1 77.96 ? C37 CN5 405 C 1 
HETATM 18 C C38 CN5 . . . KA 26 188.823 208.782 230.993 1 77.96 ? C38 CN5 405 C 1 
HETATM 19 C C39 CN5 . . . KA 26 189.274 209.51 232.256 1 77.96 ? C39 CN5 405 C 1 
HETATM 20 C C3A CN5 . . . KA 26 188.289 210.607 232.644 1 77.96 ? C3A CN5 405 C 1 
HETATM 21 C C3B CN5 . . . KA 26 187.959 210.523 234.133 1 77.96 ? C3B CN5 405 C 1 
HETATM 22 C C3C CN5 . . . KA 26 188.998 211.267 234.949 1 77.96 ? C3C CN5 405 C 1 
HETATM 23 C C3D CN5 . . . KA 26 189.677 210.319 235.922 1 77.96 ? C3D CN5 405 C 1 
HETATM 24 C C3E CN5 . . . KA 26 191.18 210.267 235.679 1 77.96 ? C3E CN5 405 C 1 
HETATM 25 C C3F CN5 . . . KA 26 191.837 209.393 236.727 1 77.96 ? C3F CN5 405 C 1 
HETATM 26 P P' CN5 . . . KA 26 188.576 195.38 221.616 1 77.96 ? P' CN5 405 C 1 
HETATM 27 O O1' CN5 . . . KA 26 189.052 196.886 222.226 1 77.96 ? O1' CN5 405 C 1 
HETATM 28 O O2' CN5 . . . KA 26 187.342 195.051 222.426 1 77.96 ? O2' CN5 405 C 1 
HETATM 29 O O3' CN5 . . . KA 26 189.786 194.398 222.206 1 77.96 ? O3' CN5 405 C 1 
HETATM 30 O O4' CN5 . . . KA 26 188.588 195.439 220.143 1 77.96 ? O4' CN5 405 C 1 
HETATM 31 C C1' CN5 . . . KA 26 189.909 197.625 221.46 1 77.96 ? C1' CN5 405 C 1 
HETATM 32 C C2' CN5 . . . KA 26 189.49 199.077 221.579 1 77.96 ? C2' CN5 405 C 1 
HETATM 33 C C3' CN5 . . . KA 26 189.939 199.798 220.339 1 77.96 ? C3' CN5 405 C 1 
HETATM 34 O O41 CN5 . . . KA 26 189.934 201.181 220.629 1 77.96 ? O41 CN5 405 C 1 
HETATM 35 O O42 CN5 . . . KA 26 192.125 201.021 220.934 1 77.96 ? O42 CN5 405 C 1 
HETATM 36 C C41 CN5 . . . KA 26 191.131 201.716 220.879 1 77.96 ? C41 CN5 405 C 1 
HETATM 37 C C42 CN5 . . . KA 26 191.194 203.194 221.083 1 77.96 ? C42 CN5 405 C 1 
HETATM 38 C CA CN5 . . . KA 26 190.058 194.423 223.568 1 77.96 ? CA CN5 405 C 1 
HETATM 39 C CB CN5 . . . KA 26 191.418 195.092 223.758 1 77.96 ? CB CN5 405 C 1 
HETATM 40 O OA CN5 . . . KA 26 192.397 194.484 222.976 1 77.96 ? OA CN5 405 C 1 
HETATM 41 C CC CN5 . . . KA 26 191.792 195.038 225.237 1 77.96 ? CC CN5 405 C 1 
#
_model_server_stats.io_time_ms              80 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    97 
_model_server_stats.query_time_ms           544 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           41 
#