data_6GIQ # _model_server_result.job_id odxwUHLu5QZPo_CSeMC7cw _model_server_result.datetime_utc '2024-11-21 13:44:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6giq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"WA","auth_seq_id":407}' # _entry.id 6GIQ # _exptl.entry_id 6GIQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 593.773 _entity.id 31 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GIQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GIQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 32-meric _pdbx_struct_assembly.oligomeric_count 32 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 31 QA N N ? 31 WA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 164 E CYS 164 1_555 E SG CYS 180 E CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 F SG CYS 101 F CYS 101 1_555 F SG CYS 123 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 N SG CYS 164 P CYS 164 1_555 N SG CYS 180 P CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 O SG CYS 101 Q CYS 101 1_555 O SG CYS 123 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 DA SG CYS 27 j CYS 27 1_555 DA SG CYS 59 j CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 DA SG CYS 37 j CYS 37 1_555 DA SG CYS 48 j CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 C NE2 HIS 82 C HIS 82 1_555 HA FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc2 C NE2 HIS 96 C HIS 96 1_555 IA FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 HA FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 IA FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc5 D NE2 HIS 105 D HIS 105 1_555 MA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc6 L NE2 HIS 82 N HIS 82 1_555 SA FE HEC . N HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc7 L NE2 HIS 96 N HIS 96 1_555 TA FE HEC . N HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc8 L NE2 HIS 183 N HIS 183 1_555 SA FE HEC . N HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc9 L NE2 HIS 197 N HIS 197 1_555 TA FE HEC . N HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc10 M NE2 HIS 105 O HIS 105 1_555 YA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc11 U NE2 HIS 62 a HIS 62 1_555 DB FE HEA . a HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc12 U ND1 HIS 241 a HIS 241 1_555 CB CU CU . a CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc13 U NE2 HIS 291 a HIS 291 1_555 CB CU CU . a CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc14 U NE2 HIS 378 a HIS 378 1_555 DB FE HEA . a HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? # _chem_comp.formula 'C30 H60 N O8 P' _chem_comp.formula_weight 593.773 _chem_comp.id 9PE _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLETHANOLAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P 9PE doub 315 n n P O11 9PE sing 316 n n P O14 9PE sing 317 n n P O13 9PE sing 318 n n C12 N 9PE sing 319 n n N HN 9PE sing 320 n n N HNA 9PE sing 321 n n O11 C1 9PE sing 322 n n O13 C11 9PE sing 323 n n O14 HO14 9PE sing 324 n n C11 C12 9PE sing 325 n n C11 H11 9PE sing 326 n n C11 H11A 9PE sing 327 n n C12 H12 9PE sing 328 n n C12 H12A 9PE sing 329 n n C2 C1 9PE sing 330 n n C1 H1 9PE sing 331 n n C1 H1A 9PE sing 332 n n O21 C2 9PE sing 333 n n C2 C3 9PE sing 334 n n C2 H2 9PE sing 335 n n O31 C3 9PE sing 336 n n C3 H3 9PE sing 337 n n C3 H3A 9PE sing 338 n n O31 C31 9PE sing 339 n n C31 O32 9PE doub 340 n n C32 C31 9PE sing 341 n n C33 C32 9PE sing 342 n n C32 H32 9PE sing 343 n n C32 H32A 9PE sing 344 n n C34 C33 9PE sing 345 n n C33 H33 9PE sing 346 n n C33 H33A 9PE sing 347 n n C35 C34 9PE sing 348 n n C34 H34 9PE sing 349 n n C34 H34A 9PE sing 350 n n C36 C35 9PE sing 351 n n C35 H35 9PE sing 352 n n C35 H35A 9PE sing 353 n n C37 C36 9PE sing 354 n n C36 H36 9PE sing 355 n n C36 H36A 9PE sing 356 n n C37 H37 9PE sing 357 n n C37 H37A 9PE sing 358 n n C37 H37B 9PE sing 359 n n C21 O21 9PE sing 360 n n O22 C21 9PE doub 361 n n C22 C21 9PE sing 362 n n C23 C22 9PE sing 363 n n C22 H22 9PE sing 364 n n C22 H22A 9PE sing 365 n n C23 C24 9PE sing 366 n n C23 H23 9PE sing 367 n n C23 H23A 9PE sing 368 n n C25 C24 9PE sing 369 n n C24 H24 9PE sing 370 n n C24 H24A 9PE sing 371 n n C26 C25 9PE sing 372 n n C25 H25 9PE sing 373 n n C25 H25A 9PE sing 374 n n C27 C26 9PE sing 375 n n C26 H26 9PE sing 376 n n C26 H26A 9PE sing 377 n n C28 C27 9PE sing 378 n n C27 H27 9PE sing 379 n n C27 H27A 9PE sing 380 n n C28 C29 9PE sing 381 n n C28 H28 9PE sing 382 n n C28 H28A 9PE sing 383 n n C2A C29 9PE sing 384 n n C29 H29 9PE sing 385 n n C29 H29A 9PE sing 386 n n C2A C2B 9PE sing 387 n n C2A H2A 9PE sing 388 n n C2A H2AA 9PE sing 389 n n C2C C2B 9PE sing 390 n n C2B H2B 9PE sing 391 n n C2B H2BA 9PE sing 392 n n C2C C2D 9PE sing 393 n n C2C H2C 9PE sing 394 n n C2C H2CA 9PE sing 395 n n C2E C2D 9PE sing 396 n n C2D H2D 9PE sing 397 n n C2D H2DA 9PE sing 398 n n C2E C2F 9PE sing 399 n n C2E H2E 9PE sing 400 n n C2E H2EA 9PE sing 401 n n C2G C2F 9PE sing 402 n n C2F H2F 9PE sing 403 n n C2F H2FA 9PE sing 404 n n C2H C2G 9PE sing 405 n n C2G H2G 9PE sing 406 n n C2G H2GA 9PE sing 407 n n C2I C2H 9PE sing 408 n n C2H H2H 9PE sing 409 n n C2H H2HA 9PE sing 410 n n C2I H2I 9PE sing 411 n n C2I H2IA 9PE sing 412 n n C2I H2IB 9PE sing 413 n n # _atom_sites.entry_id 6GIQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code GA 23 6PH C 1 401 4013 6PH 6PH . HA 24 HEC C 1 402 4001 HEC HEM . IA 24 HEC C 1 403 4002 HEC HEM . JA 25 8PE C 1 404 4010 8PE 8PE . KA 26 CN5 C 1 405 4033 CN5 CN5 . LA 27 UQ6 C 1 406 4034 UQ6 UQ6 . MA 24 HEC D 1 401 4003 HEC HEM . NA 28 7PH D 1 402 4014 7PH 7PH . OA 29 FES E 1 301 4004 FES FES . PA 30 PCF I 1 101 4012 PCF PCF . QA 31 9PE N 1 401 4011 9PE 9PE . RA 23 6PH N 1 402 4113 6PH 6PH . SA 24 HEC N 1 403 4021 HEC HEM . TA 24 HEC N 1 404 4022 HEC HEM . UA 27 UQ6 N 1 405 4023 UQ6 UQ6 . VA 25 8PE N 1 406 4110 8PE 8PE . WA 31 9PE N 1 407 4111 9PE 9PE . XA 32 CN3 N 1 408 4131 CN3 CN3 . YA 24 HEC O 1 401 4023 HEC HEM . ZA 28 7PH P 1 301 4114 7PH 7PH . AB 29 FES P 1 302 4024 FES FES . BB 30 PCF T 1 101 4112 PCF PCF . CB 33 CU a 1 601 535 CU CU . DB 34 HEA a 1 602 538 HEA HEA . EB 34 HEA a 1 603 539 HEA HEA . FB 35 CUA b 1 301 252 CUA CUA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 9PE . . . WA 31 174.467 197.261 225.272 1 62.45 ? P 9PE 407 N 1 HETATM 2 N N 9PE . . . WA 31 171.291 195.751 222.103 1 62.45 ? N 9PE 407 N 1 HETATM 3 O O11 9PE . . . WA 31 174.085 198.693 224.667 1 62.45 ? O11 9PE 407 N 1 HETATM 4 O O12 9PE . . . WA 31 175.881 197.265 225.677 1 62.45 ? O12 9PE 407 N 1 HETATM 5 O O13 9PE . . . WA 31 174.225 196.152 224.137 1 62.45 ? O13 9PE 407 N 1 HETATM 6 O O14 9PE . . . WA 31 173.531 196.945 226.537 1 62.45 ? O14 9PE 407 N 1 HETATM 7 C C11 9PE . . . WA 31 172.946 195.556 223.903 1 62.45 ? C11 9PE 407 N 1 HETATM 8 C C12 9PE . . . WA 31 172.693 195.42 222.398 1 62.45 ? C12 9PE 407 N 1 HETATM 9 C C1 9PE . . . WA 31 173.741 199.813 225.472 1 62.45 ? C1 9PE 407 N 1 HETATM 10 C C2 9PE . . . WA 31 174.591 200.996 225.023 1 62.45 ? C2 9PE 407 N 1 HETATM 11 C C3 9PE . . . WA 31 173.893 201.719 223.876 1 62.45 ? C3 9PE 407 N 1 HETATM 12 O O31 9PE . . . WA 31 174.703 202.867 223.519 1 62.45 ? O31 9PE 407 N 1 HETATM 13 O O32 9PE . . . WA 31 173.087 203.601 222.218 1 62.45 ? O32 9PE 407 N 1 HETATM 14 C C31 9PE . . . WA 31 174.116 203.829 222.802 1 62.45 ? C31 9PE 407 N 1 HETATM 15 C C32 9PE . . . WA 31 174.727 205.2 222.734 1 62.45 ? C32 9PE 407 N 1 HETATM 16 C C33 9PE . . . WA 31 176.229 205.12 222.979 1 62.45 ? C33 9PE 407 N 1 HETATM 17 C C34 9PE . . . WA 31 176.838 206.455 222.56 1 62.45 ? C34 9PE 407 N 1 HETATM 18 C C35 9PE . . . WA 31 178.087 206.763 223.384 1 62.45 ? C35 9PE 407 N 1 HETATM 19 C C36 9PE . . . WA 31 178.608 208.138 222.97 1 62.45 ? C36 9PE 407 N 1 HETATM 20 C C37 9PE . . . WA 31 179.488 208.726 224.073 1 62.45 ? C37 9PE 407 N 1 HETATM 21 O O21 9PE . . . WA 31 174.754 201.921 226.122 1 62.45 ? O21 9PE 407 N 1 HETATM 22 O O22 9PE . . . WA 31 176.95 201.709 226.051 1 62.45 ? O22 9PE 407 N 1 HETATM 23 C C21 9PE . . . WA 31 175.991 202.355 226.386 1 62.45 ? C21 9PE 407 N 1 HETATM 24 C C22 9PE . . . WA 31 176.181 203.663 227.101 1 62.45 ? C22 9PE 407 N 1 HETATM 25 C C23 9PE . . . WA 31 177.634 203.796 227.532 1 62.45 ? C23 9PE 407 N 1 HETATM 26 C C24 9PE . . . WA 31 178.207 205.059 226.904 1 62.45 ? C24 9PE 407 N 1 HETATM 27 C C25 9PE . . . WA 31 179.196 205.686 227.879 1 62.45 ? C25 9PE 407 N 1 HETATM 28 C C26 9PE . . . WA 31 180.476 206.061 227.137 1 62.45 ? C26 9PE 407 N 1 HETATM 29 C C27 9PE . . . WA 31 181.375 206.85 228.083 1 62.45 ? C27 9PE 407 N 1 HETATM 30 C C28 9PE . . . WA 31 182.808 206.34 227.98 1 62.45 ? C28 9PE 407 N 1 HETATM 31 C C29 9PE . . . WA 31 183.324 206.532 226.56 1 62.45 ? C29 9PE 407 N 1 HETATM 32 C C2A 9PE . . . WA 31 184.785 206.095 226.511 1 62.45 ? C2A 9PE 407 N 1 HETATM 33 C C2B 9PE . . . WA 31 185.154 205.809 225.059 1 62.45 ? C2B 9PE 407 N 1 HETATM 34 C C2C 9PE . . . WA 31 186.458 205.018 225.003 1 62.45 ? C2C 9PE 407 N 1 HETATM 35 C C2D 9PE . . . WA 31 186.881 204.881 223.54 1 62.45 ? C2D 9PE 407 N 1 HETATM 36 C C2E 9PE . . . WA 31 188.245 205.543 223.342 1 62.45 ? C2E 9PE 407 N 1 HETATM 37 C C2F 9PE . . . WA 31 188.264 206.292 222.012 1 62.45 ? C2F 9PE 407 N 1 HETATM 38 C C2G 9PE . . . WA 31 188.81 207.704 222.232 1 62.45 ? C2G 9PE 407 N 1 HETATM 39 C C2H 9PE . . . WA 31 187.932 208.459 223.233 1 62.45 ? C2H 9PE 407 N 1 HETATM 40 C C2I 9PE . . . WA 31 188.476 209.872 223.44 1 62.45 ? C2I 9PE 407 N 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 478 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 40 #