data_6GIV # _model_server_result.job_id q1cJp9IF5DNAET4ET3uStg _model_server_result.datetime_utc '2024-12-03 04:06:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6giv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 6GIV # _exptl.entry_id 6GIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.16 _cell.angle_gamma 90 _cell.entry_id 6GIV _cell.length_a 122.956 _cell.length_b 47.513 _cell.length_c 49.81 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -17.166664 0 46.758333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 206 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 206 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 261 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 261 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.022 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6GIV _atom_sites.fract_transf_matrix[1][1] 0.008133 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002985 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLU A 1 301 1 GLU GLU . C 3 SO4 A 1 302 1 SO4 SO4 . D 4 GOL A 1 303 1 GOL GOL . E 4 GOL A 1 304 3 GOL GOL . F 4 GOL A 1 305 4 GOL GOL . G 5 BR A 1 306 1 BR BR . H 6 HOH A 1 401 100 HOH HOH . H 6 HOH A 2 402 67 HOH HOH . H 6 HOH A 3 403 93 HOH HOH . H 6 HOH A 4 404 222 HOH HOH . H 6 HOH A 5 405 107 HOH HOH . H 6 HOH A 6 406 45 HOH HOH . H 6 HOH A 7 407 51 HOH HOH . H 6 HOH A 8 408 355 HOH HOH . H 6 HOH A 9 409 177 HOH HOH . H 6 HOH A 10 410 70 HOH HOH . H 6 HOH A 11 411 159 HOH HOH . H 6 HOH A 12 412 182 HOH HOH . H 6 HOH A 13 413 151 HOH HOH . H 6 HOH A 14 414 56 HOH HOH . H 6 HOH A 15 415 61 HOH HOH . H 6 HOH A 16 416 137 HOH HOH . H 6 HOH A 17 417 341 HOH HOH . H 6 HOH A 18 418 60 HOH HOH . H 6 HOH A 19 419 117 HOH HOH . H 6 HOH A 20 420 349 HOH HOH . H 6 HOH A 21 421 262 HOH HOH . H 6 HOH A 22 422 315 HOH HOH . H 6 HOH A 23 423 94 HOH HOH . H 6 HOH A 24 424 96 HOH HOH . H 6 HOH A 25 425 207 HOH HOH . H 6 HOH A 26 426 344 HOH HOH . H 6 HOH A 27 427 242 HOH HOH . H 6 HOH A 28 428 71 HOH HOH . H 6 HOH A 29 429 190 HOH HOH . H 6 HOH A 30 430 278 HOH HOH . H 6 HOH A 31 431 239 HOH HOH . H 6 HOH A 32 432 95 HOH HOH . H 6 HOH A 33 433 5 HOH HOH . H 6 HOH A 34 434 17 HOH HOH . H 6 HOH A 35 435 114 HOH HOH . H 6 HOH A 36 436 230 HOH HOH . H 6 HOH A 37 437 31 HOH HOH . H 6 HOH A 38 438 27 HOH HOH . H 6 HOH A 39 439 231 HOH HOH . H 6 HOH A 40 440 343 HOH HOH . H 6 HOH A 41 441 193 HOH HOH . H 6 HOH A 42 442 47 HOH HOH . H 6 HOH A 43 443 33 HOH HOH . H 6 HOH A 44 444 12 HOH HOH . H 6 HOH A 45 445 19 HOH HOH . H 6 HOH A 46 446 205 HOH HOH . H 6 HOH A 47 447 180 HOH HOH . H 6 HOH A 48 448 30 HOH HOH . H 6 HOH A 49 449 162 HOH HOH . H 6 HOH A 50 450 104 HOH HOH . H 6 HOH A 51 451 14 HOH HOH . H 6 HOH A 52 452 235 HOH HOH . H 6 HOH A 53 453 75 HOH HOH . H 6 HOH A 54 454 249 HOH HOH . H 6 HOH A 55 455 53 HOH HOH . H 6 HOH A 56 456 2 HOH HOH . H 6 HOH A 57 457 23 HOH HOH . H 6 HOH A 58 458 39 HOH HOH . H 6 HOH A 59 459 156 HOH HOH . H 6 HOH A 60 460 172 HOH HOH . H 6 HOH A 61 461 178 HOH HOH . H 6 HOH A 62 462 37 HOH HOH . H 6 HOH A 63 463 22 HOH HOH . H 6 HOH A 64 464 211 HOH HOH . H 6 HOH A 65 465 8 HOH HOH . H 6 HOH A 66 466 171 HOH HOH . H 6 HOH A 67 467 112 HOH HOH . H 6 HOH A 68 468 63 HOH HOH . H 6 HOH A 69 469 79 HOH HOH . H 6 HOH A 70 470 147 HOH HOH . H 6 HOH A 71 471 259 HOH HOH . H 6 HOH A 72 472 26 HOH HOH . H 6 HOH A 73 473 43 HOH HOH . H 6 HOH A 74 474 348 HOH HOH . H 6 HOH A 75 475 121 HOH HOH . H 6 HOH A 76 476 141 HOH HOH . H 6 HOH A 77 477 84 HOH HOH . H 6 HOH A 78 478 59 HOH HOH . H 6 HOH A 79 479 241 HOH HOH . H 6 HOH A 80 480 40 HOH HOH . H 6 HOH A 81 481 396 HOH HOH . H 6 HOH A 82 482 198 HOH HOH . H 6 HOH A 83 483 146 HOH HOH . H 6 HOH A 84 484 28 HOH HOH . H 6 HOH A 85 485 66 HOH HOH . H 6 HOH A 86 486 24 HOH HOH . H 6 HOH A 87 487 21 HOH HOH . H 6 HOH A 88 488 15 HOH HOH . H 6 HOH A 89 489 169 HOH HOH . H 6 HOH A 90 490 3 HOH HOH . H 6 HOH A 91 491 186 HOH HOH . H 6 HOH A 92 492 92 HOH HOH . H 6 HOH A 93 493 77 HOH HOH . H 6 HOH A 94 494 227 HOH HOH . H 6 HOH A 95 495 74 HOH HOH . H 6 HOH A 96 496 353 HOH HOH . H 6 HOH A 97 497 78 HOH HOH . H 6 HOH A 98 498 54 HOH HOH . H 6 HOH A 99 499 174 HOH HOH . H 6 HOH A 100 500 105 HOH HOH . H 6 HOH A 101 501 135 HOH HOH . H 6 HOH A 102 502 256 HOH HOH . H 6 HOH A 103 503 9 HOH HOH . H 6 HOH A 104 504 252 HOH HOH . H 6 HOH A 105 505 179 HOH HOH . H 6 HOH A 106 506 129 HOH HOH . H 6 HOH A 107 507 62 HOH HOH . H 6 HOH A 108 508 116 HOH HOH . H 6 HOH A 109 509 64 HOH HOH . H 6 HOH A 110 510 133 HOH HOH . H 6 HOH A 111 511 34 HOH HOH . H 6 HOH A 112 512 58 HOH HOH . H 6 HOH A 113 513 101 HOH HOH . H 6 HOH A 114 514 176 HOH HOH . H 6 HOH A 115 515 57 HOH HOH . H 6 HOH A 116 516 145 HOH HOH . H 6 HOH A 117 517 221 HOH HOH . H 6 HOH A 118 518 18 HOH HOH . H 6 HOH A 119 519 106 HOH HOH . H 6 HOH A 120 520 132 HOH HOH . H 6 HOH A 121 521 13 HOH HOH . H 6 HOH A 122 522 346 HOH HOH . H 6 HOH A 123 523 86 HOH HOH . H 6 HOH A 124 524 276 HOH HOH . H 6 HOH A 125 525 255 HOH HOH . H 6 HOH A 126 526 25 HOH HOH . H 6 HOH A 127 527 38 HOH HOH . H 6 HOH A 128 528 204 HOH HOH . H 6 HOH A 129 529 49 HOH HOH . H 6 HOH A 130 530 280 HOH HOH . H 6 HOH A 131 531 82 HOH HOH . H 6 HOH A 132 532 109 HOH HOH . H 6 HOH A 133 533 99 HOH HOH . H 6 HOH A 134 534 323 HOH HOH . H 6 HOH A 135 535 220 HOH HOH . H 6 HOH A 136 536 123 HOH HOH . H 6 HOH A 137 537 202 HOH HOH . H 6 HOH A 138 538 11 HOH HOH . H 6 HOH A 139 539 371 HOH HOH . H 6 HOH A 140 540 29 HOH HOH . H 6 HOH A 141 541 110 HOH HOH . H 6 HOH A 142 542 317 HOH HOH . H 6 HOH A 143 543 120 HOH HOH . H 6 HOH A 144 544 206 HOH HOH . H 6 HOH A 145 545 301 HOH HOH . H 6 HOH A 146 546 157 HOH HOH . H 6 HOH A 147 547 192 HOH HOH . H 6 HOH A 148 548 10 HOH HOH . H 6 HOH A 149 549 32 HOH HOH . H 6 HOH A 150 550 270 HOH HOH . H 6 HOH A 151 551 122 HOH HOH . H 6 HOH A 152 552 87 HOH HOH . H 6 HOH A 153 553 128 HOH HOH . H 6 HOH A 154 554 6 HOH HOH . H 6 HOH A 155 555 35 HOH HOH . H 6 HOH A 156 556 52 HOH HOH . H 6 HOH A 157 557 55 HOH HOH . H 6 HOH A 158 558 50 HOH HOH . H 6 HOH A 159 559 98 HOH HOH . H 6 HOH A 160 560 165 HOH HOH . H 6 HOH A 161 561 228 HOH HOH . H 6 HOH A 162 562 41 HOH HOH . H 6 HOH A 163 563 90 HOH HOH . H 6 HOH A 164 564 44 HOH HOH . H 6 HOH A 165 565 248 HOH HOH . H 6 HOH A 166 566 65 HOH HOH . H 6 HOH A 167 567 108 HOH HOH . H 6 HOH A 168 568 308 HOH HOH . H 6 HOH A 169 569 183 HOH HOH . H 6 HOH A 170 570 245 HOH HOH . H 6 HOH A 171 571 152 HOH HOH . H 6 HOH A 172 572 380 HOH HOH . H 6 HOH A 173 573 119 HOH HOH . H 6 HOH A 174 574 124 HOH HOH . H 6 HOH A 175 575 125 HOH HOH . H 6 HOH A 176 576 191 HOH HOH . H 6 HOH A 177 577 144 HOH HOH . H 6 HOH A 178 578 20 HOH HOH . H 6 HOH A 179 579 72 HOH HOH . H 6 HOH A 180 580 273 HOH HOH . H 6 HOH A 181 581 199 HOH HOH . H 6 HOH A 182 582 48 HOH HOH . H 6 HOH A 183 583 76 HOH HOH . H 6 HOH A 184 584 377 HOH HOH . H 6 HOH A 185 585 272 HOH HOH . H 6 HOH A 186 586 161 HOH HOH . H 6 HOH A 187 587 130 HOH HOH . H 6 HOH A 188 588 236 HOH HOH . H 6 HOH A 189 589 158 HOH HOH . H 6 HOH A 190 590 73 HOH HOH . H 6 HOH A 191 591 111 HOH HOH . H 6 HOH A 192 592 410 HOH HOH . H 6 HOH A 193 593 295 HOH HOH . H 6 HOH A 194 594 218 HOH HOH . H 6 HOH A 195 595 279 HOH HOH . H 6 HOH A 196 596 411 HOH HOH . H 6 HOH A 197 597 166 HOH HOH . H 6 HOH A 198 598 97 HOH HOH . H 6 HOH A 199 599 244 HOH HOH . H 6 HOH A 200 600 282 HOH HOH . H 6 HOH A 201 601 36 HOH HOH . H 6 HOH A 202 602 365 HOH HOH . H 6 HOH A 203 603 91 HOH HOH . H 6 HOH A 204 604 359 HOH HOH . H 6 HOH A 205 605 237 HOH HOH . H 6 HOH A 206 606 408 HOH HOH . H 6 HOH A 207 607 83 HOH HOH . H 6 HOH A 208 608 394 HOH HOH . H 6 HOH A 209 609 337 HOH HOH . H 6 HOH A 210 610 281 HOH HOH . H 6 HOH A 211 611 115 HOH HOH . H 6 HOH A 212 612 126 HOH HOH . H 6 HOH A 213 613 412 HOH HOH . H 6 HOH A 214 614 139 HOH HOH . H 6 HOH A 215 615 363 HOH HOH . H 6 HOH A 216 616 103 HOH HOH . H 6 HOH A 217 617 149 HOH HOH . H 6 HOH A 218 618 285 HOH HOH . H 6 HOH A 219 619 286 HOH HOH . H 6 HOH A 220 620 356 HOH HOH . H 6 HOH A 221 621 163 HOH HOH . H 6 HOH A 222 622 160 HOH HOH . H 6 HOH A 223 623 194 HOH HOH . H 6 HOH A 224 624 216 HOH HOH . H 6 HOH A 225 625 136 HOH HOH . H 6 HOH A 226 626 88 HOH HOH . H 6 HOH A 227 627 289 HOH HOH . H 6 HOH A 228 628 68 HOH HOH . H 6 HOH A 229 629 80 HOH HOH . H 6 HOH A 230 630 173 HOH HOH . H 6 HOH A 231 631 85 HOH HOH . H 6 HOH A 232 632 197 HOH HOH . H 6 HOH A 233 633 131 HOH HOH . H 6 HOH A 234 634 292 HOH HOH . H 6 HOH A 235 635 275 HOH HOH . H 6 HOH A 236 636 287 HOH HOH . H 6 HOH A 237 637 342 HOH HOH . H 6 HOH A 238 638 113 HOH HOH . H 6 HOH A 239 639 375 HOH HOH . H 6 HOH A 240 640 246 HOH HOH . H 6 HOH A 241 641 168 HOH HOH . H 6 HOH A 242 642 185 HOH HOH . H 6 HOH A 243 643 81 HOH HOH . H 6 HOH A 244 644 340 HOH HOH . H 6 HOH A 245 645 399 HOH HOH . H 6 HOH A 246 646 170 HOH HOH . H 6 HOH A 247 647 233 HOH HOH . H 6 HOH A 248 648 138 HOH HOH . H 6 HOH A 249 649 208 HOH HOH . H 6 HOH A 250 650 261 HOH HOH . H 6 HOH A 251 651 213 HOH HOH . H 6 HOH A 252 652 154 HOH HOH . H 6 HOH A 253 653 345 HOH HOH . H 6 HOH A 254 654 42 HOH HOH . H 6 HOH A 255 655 143 HOH HOH . H 6 HOH A 256 656 153 HOH HOH . H 6 HOH A 257 657 148 HOH HOH . H 6 HOH A 258 658 200 HOH HOH . H 6 HOH A 259 659 257 HOH HOH . H 6 HOH A 260 660 89 HOH HOH . H 6 HOH A 261 661 181 HOH HOH . H 6 HOH A 262 662 253 HOH HOH . H 6 HOH A 263 663 219 HOH HOH . H 6 HOH A 264 664 304 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 -33.455 14.279 35.947 1 61.18 ? C1 GOL 305 A 1 HETATM 2 O O1 GOL . . . F 4 -33.557 14.952 34.736 1 61.13 ? O1 GOL 305 A 1 HETATM 3 C C2 GOL . . . F 4 -33.306 15.362 37.044 1 56.5 ? C2 GOL 305 A 1 HETATM 4 O O2 GOL . . . F 4 -34.523 15.681 37.623 1 69.1 ? O2 GOL 305 A 1 HETATM 5 C C3 GOL . . . F 4 -32.291 14.798 38.068 1 35.16 ? C3 GOL 305 A 1 HETATM 6 O O3 GOL . . . F 4 -31.977 15.855 38.917 1 39.9 ? O3 GOL 305 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #