data_6GJ6
#
_model_server_result.job_id            IBbBqydlaEZWXepV-YST5w 
_model_server_result.datetime_utc      '2024-10-15 20:29:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gj6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    6GJ6 
#
_exptl.entry_id    6GJ6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              521.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6GJ6 
_cell.length_a            85.89 
_cell.length_b            85.89 
_cell.length_c            47.525 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GJ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 18 A SER 17 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc2 A OG1 THR 36 A THR 35 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc3 B MG MG . A MG 201 1_555 D O2G GCP . A GCP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc4 B MG MG . A MG 201 1_555 D O2B GCP . A GCP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc5 B MG MG . A MG 201 1_555 F O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? 
metalc ? metalc6 B MG MG . A MG 201 1_555 F O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
#
_chem_comp.formula           'C11 H18 N5 O13 P3' 
_chem_comp.formula_weight    521.208 
_chem_comp.id                GCP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GCP doub 129 n n 
PG O2G GCP sing 130 n n 
PG O3G GCP sing 131 n n 
PG C3B GCP sing 132 n n 
O2G HOG2 GCP sing 133 n n 
O3G HOG3 GCP sing 134 n n 
C3B PB GCP sing 135 n n 
C3B H3B1 GCP sing 136 n n 
C3B H3B2 GCP sing 137 n n 
PB O1B GCP doub 138 n n 
PB O2B GCP sing 139 n n 
PB O3A GCP sing 140 n n 
O2B HOB2 GCP sing 141 n n 
O3A PA GCP sing 142 n n 
PA O1A GCP doub 143 n n 
PA O2A GCP sing 144 n n 
PA O5' GCP sing 145 n n 
O2A HOA2 GCP sing 146 n n 
O5' C5' GCP sing 147 n n 
C5' C4' GCP sing 148 n n 
C5' "H5'2" GCP sing 149 n n 
C5' "H5'1" GCP sing 150 n n 
C4' O4' GCP sing 151 n n 
C4' C3' GCP sing 152 n n 
C4' H4' GCP sing 153 n n 
O4' C1' GCP sing 154 n n 
C3' O3' GCP sing 155 n n 
C3' C2' GCP sing 156 n n 
C3' H3' GCP sing 157 n n 
O3' HO3' GCP sing 158 n n 
C2' O2' GCP sing 159 n n 
C2' C1' GCP sing 160 n n 
C2' H2' GCP sing 161 n n 
O2' HO2' GCP sing 162 n n 
C1' N9 GCP sing 163 n n 
C1' H1' GCP sing 164 n n 
N9 C8 GCP sing 165 n y 
N9 C4 GCP sing 166 n y 
C8 N7 GCP doub 167 n y 
C8 H8 GCP sing 168 n n 
N7 C5 GCP sing 169 n y 
C5 C6 GCP sing 170 n y 
C5 C4 GCP doub 171 n y 
C6 O6 GCP doub 172 n n 
C6 N1 GCP sing 173 n y 
N1 C2 GCP sing 174 n y 
N1 HN1 GCP sing 175 n n 
C2 N2 GCP sing 176 n n 
C2 N3 GCP doub 177 n y 
N2 HN21 GCP sing 178 n n 
N2 HN22 GCP sing 179 n n 
N3 C4 GCP sing 180 n y 
#
_atom_sites.entry_id                     6GJ6 
_atom_sites.fract_transf_matrix[1][1]    0.011643 
_atom_sites.fract_transf_matrix[1][2]    0.006722 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013444 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021042 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 201 1 MG MG . 
C 3 NO3 A 1 202 1 NO3 NO3 . 
D 4 GCP A 1 203 1 GCP GCP . 
E 5 EZZ A 1 204 1 EZZ LIG . 
F 6 HOH A 1 301 110 HOH HOH . 
F 6 HOH A 2 302 42 HOH HOH . 
F 6 HOH A 3 303 129 HOH HOH . 
F 6 HOH A 4 304 102 HOH HOH . 
F 6 HOH A 5 305 23 HOH HOH . 
F 6 HOH A 6 306 12 HOH HOH . 
F 6 HOH A 7 307 108 HOH HOH . 
F 6 HOH A 8 308 130 HOH HOH . 
F 6 HOH A 9 309 64 HOH HOH . 
F 6 HOH A 10 310 40 HOH HOH . 
F 6 HOH A 11 311 105 HOH HOH . 
F 6 HOH A 12 312 111 HOH HOH . 
F 6 HOH A 13 313 106 HOH HOH . 
F 6 HOH A 14 314 24 HOH HOH . 
F 6 HOH A 15 315 6 HOH HOH . 
F 6 HOH A 16 316 29 HOH HOH . 
F 6 HOH A 17 317 124 HOH HOH . 
F 6 HOH A 18 318 14 HOH HOH . 
F 6 HOH A 19 319 57 HOH HOH . 
F 6 HOH A 20 320 20 HOH HOH . 
F 6 HOH A 21 321 4 HOH HOH . 
F 6 HOH A 22 322 120 HOH HOH . 
F 6 HOH A 23 323 1 HOH HOH . 
F 6 HOH A 24 324 47 HOH HOH . 
F 6 HOH A 25 325 11 HOH HOH . 
F 6 HOH A 26 326 164 HOH HOH . 
F 6 HOH A 27 327 8 HOH HOH . 
F 6 HOH A 28 328 16 HOH HOH . 
F 6 HOH A 29 329 39 HOH HOH . 
F 6 HOH A 30 330 46 HOH HOH . 
F 6 HOH A 31 331 32 HOH HOH . 
F 6 HOH A 32 332 139 HOH HOH . 
F 6 HOH A 33 333 69 HOH HOH . 
F 6 HOH A 34 334 112 HOH HOH . 
F 6 HOH A 35 335 127 HOH HOH . 
F 6 HOH A 36 336 48 HOH HOH . 
F 6 HOH A 37 337 18 HOH HOH . 
F 6 HOH A 38 338 103 HOH HOH . 
F 6 HOH A 39 339 19 HOH HOH . 
F 6 HOH A 40 340 163 HOH HOH . 
F 6 HOH A 41 341 109 HOH HOH . 
F 6 HOH A 42 342 121 HOH HOH . 
F 6 HOH A 43 343 53 HOH HOH . 
F 6 HOH A 44 344 145 HOH HOH . 
F 6 HOH A 45 345 151 HOH HOH . 
F 6 HOH A 46 346 34 HOH HOH . 
F 6 HOH A 47 347 99 HOH HOH . 
F 6 HOH A 48 348 134 HOH HOH . 
F 6 HOH A 49 349 51 HOH HOH . 
F 6 HOH A 50 350 155 HOH HOH . 
F 6 HOH A 51 351 7 HOH HOH . 
F 6 HOH A 52 352 66 HOH HOH . 
F 6 HOH A 53 353 10 HOH HOH . 
F 6 HOH A 54 354 58 HOH HOH . 
F 6 HOH A 55 355 161 HOH HOH . 
F 6 HOH A 56 356 33 HOH HOH . 
F 6 HOH A 57 357 3 HOH HOH . 
F 6 HOH A 58 358 17 HOH HOH . 
F 6 HOH A 59 359 90 HOH HOH . 
F 6 HOH A 60 360 30 HOH HOH . 
F 6 HOH A 61 361 27 HOH HOH . 
F 6 HOH A 62 362 49 HOH HOH . 
F 6 HOH A 63 363 31 HOH HOH . 
F 6 HOH A 64 364 36 HOH HOH . 
F 6 HOH A 65 365 44 HOH HOH . 
F 6 HOH A 66 366 125 HOH HOH . 
F 6 HOH A 67 367 15 HOH HOH . 
F 6 HOH A 68 368 52 HOH HOH . 
F 6 HOH A 69 369 178 HOH HOH . 
F 6 HOH A 70 370 67 HOH HOH . 
F 6 HOH A 71 371 115 HOH HOH . 
F 6 HOH A 72 372 13 HOH HOH . 
F 6 HOH A 73 373 45 HOH HOH . 
F 6 HOH A 74 374 28 HOH HOH . 
F 6 HOH A 75 375 5 HOH HOH . 
F 6 HOH A 76 376 156 HOH HOH . 
F 6 HOH A 77 377 141 HOH HOH . 
F 6 HOH A 78 378 41 HOH HOH . 
F 6 HOH A 79 379 21 HOH HOH . 
F 6 HOH A 80 380 54 HOH HOH . 
F 6 HOH A 81 381 154 HOH HOH . 
F 6 HOH A 82 382 117 HOH HOH . 
F 6 HOH A 83 383 38 HOH HOH . 
F 6 HOH A 84 384 83 HOH HOH . 
F 6 HOH A 85 385 55 HOH HOH . 
F 6 HOH A 86 386 59 HOH HOH . 
F 6 HOH A 87 387 60 HOH HOH . 
F 6 HOH A 88 388 166 HOH HOH . 
F 6 HOH A 89 389 9 HOH HOH . 
F 6 HOH A 90 390 126 HOH HOH . 
F 6 HOH A 91 391 22 HOH HOH . 
F 6 HOH A 92 392 123 HOH HOH . 
F 6 HOH A 93 393 174 HOH HOH . 
F 6 HOH A 94 394 150 HOH HOH . 
F 6 HOH A 95 395 70 HOH HOH . 
F 6 HOH A 96 396 189 HOH HOH . 
F 6 HOH A 97 397 26 HOH HOH . 
F 6 HOH A 98 398 25 HOH HOH . 
F 6 HOH A 99 399 148 HOH HOH . 
F 6 HOH A 100 400 89 HOH HOH . 
F 6 HOH A 101 401 191 HOH HOH . 
F 6 HOH A 102 402 188 HOH HOH . 
F 6 HOH A 103 403 91 HOH HOH . 
F 6 HOH A 104 404 147 HOH HOH . 
F 6 HOH A 105 405 37 HOH HOH . 
F 6 HOH A 106 406 131 HOH HOH . 
F 6 HOH A 107 407 114 HOH HOH . 
F 6 HOH A 108 408 179 HOH HOH . 
F 6 HOH A 109 409 68 HOH HOH . 
F 6 HOH A 110 410 85 HOH HOH . 
F 6 HOH A 111 411 192 HOH HOH . 
F 6 HOH A 112 412 118 HOH HOH . 
F 6 HOH A 113 413 61 HOH HOH . 
F 6 HOH A 114 414 100 HOH HOH . 
F 6 HOH A 115 415 65 HOH HOH . 
F 6 HOH A 116 416 56 HOH HOH . 
F 6 HOH A 117 417 159 HOH HOH . 
F 6 HOH A 118 418 122 HOH HOH . 
F 6 HOH A 119 419 88 HOH HOH . 
F 6 HOH A 120 420 162 HOH HOH . 
F 6 HOH A 121 421 180 HOH HOH . 
F 6 HOH A 122 422 160 HOH HOH . 
F 6 HOH A 123 423 140 HOH HOH . 
F 6 HOH A 124 424 87 HOH HOH . 
F 6 HOH A 125 425 144 HOH HOH . 
F 6 HOH A 126 426 165 HOH HOH . 
F 6 HOH A 127 427 153 HOH HOH . 
F 6 HOH A 128 428 86 HOH HOH . 
F 6 HOH A 129 429 50 HOH HOH . 
F 6 HOH A 130 430 190 HOH HOH . 
F 6 HOH A 131 431 181 HOH HOH . 
F 6 HOH A 132 432 167 HOH HOH . 
F 6 HOH A 133 433 182 HOH HOH . 
F 6 HOH A 134 434 97 HOH HOH . 
F 6 HOH A 135 435 186 HOH HOH . 
F 6 HOH A 136 436 98 HOH HOH . 
F 6 HOH A 137 437 187 HOH HOH . 
F 6 HOH A 138 438 143 HOH HOH . 
F 6 HOH A 139 439 185 HOH HOH . 
F 6 HOH A 140 440 183 HOH HOH . 
F 6 HOH A 141 441 104 HOH HOH . 
F 6 HOH A 142 442 184 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GCP . . . D 4 20.84 37.479 -3.062 1 30.15 ? PG GCP 203 A 1 
HETATM 2 O O1G GCP . . . D 4 22.379 37.614 -3.525 1 31.36 ? O1G GCP 203 A 1 
HETATM 3 O O2G GCP . . . D 4 20.775 37.832 -1.517 1 30.03 ? O2G GCP 203 A 1 
HETATM 4 O O3G GCP . . . D 4 20.329 36.107 -3.239 1 29.09 ? O3G GCP 203 A 1 
HETATM 5 C C3B GCP . . . D 4 19.846 38.662 -4.018 1 24.51 ? C3B GCP 203 A 1 
HETATM 6 P PB GCP . . . D 4 18.104 38.728 -3.49 1 25.31 ? PB GCP 203 A 1 
HETATM 7 O O1B GCP . . . D 4 17.277 37.455 -3.937 1 23.21 ? O1B GCP 203 A 1 
HETATM 8 O O2B GCP . . . D 4 18.075 38.942 -2.017 1 24.33 ? O2B GCP 203 A 1 
HETATM 9 O O3A GCP . . . D 4 17.483 39.957 -4.311 1 26.54 ? O3A GCP 203 A 1 
HETATM 10 P PA GCP . . . D 4 17.509 41.503 -3.853 1 27.3 ? PA GCP 203 A 1 
HETATM 11 O O1A GCP . . . D 4 18.897 41.956 -3.5 1 25.19 ? O1A GCP 203 A 1 
HETATM 12 O O2A GCP . . . D 4 16.373 41.73 -2.903 1 26.67 ? O2A GCP 203 A 1 
HETATM 13 O O5' GCP . . . D 4 17.068 42.175 -5.243 1 27.11 ? O5' GCP 203 A 1 
HETATM 14 C C5' GCP . . . D 4 17.911 42.141 -6.407 1 28.85 ? C5' GCP 203 A 1 
HETATM 15 C C4' GCP . . . D 4 17.554 43.288 -7.352 1 26.58 ? C4' GCP 203 A 1 
HETATM 16 O O4' GCP . . . D 4 16.194 43.131 -7.784 1 28.66 ? O4' GCP 203 A 1 
HETATM 17 C C3' GCP . . . D 4 17.656 44.653 -6.665 1 27.74 ? C3' GCP 203 A 1 
HETATM 18 O O3' GCP . . . D 4 18.238 45.581 -7.586 1 27.98 ? O3' GCP 203 A 1 
HETATM 19 C C2' GCP . . . D 4 16.202 45.035 -6.374 1 26.35 ? C2' GCP 203 A 1 
HETATM 20 O O2' GCP . . . D 4 15.941 46.44 -6.375 1 25.39 ? O2' GCP 203 A 1 
HETATM 21 C C1' GCP . . . D 4 15.435 44.307 -7.46 1 27.23 ? C1' GCP 203 A 1 
HETATM 22 N N9 GCP . . . D 4 14.086 43.92 -6.996 1 27.9 ? N9 GCP 203 A 1 
HETATM 23 C C8 GCP . . . D 4 13.794 43.046 -6.02 1 25.08 ? C8 GCP 203 A 1 
HETATM 24 N N7 GCP . . . D 4 12.46 42.877 -5.921 1 26 ? N7 GCP 203 A 1 
HETATM 25 C C5 GCP . . . D 4 11.878 43.621 -6.878 1 26.18 ? C5 GCP 203 A 1 
HETATM 26 C C6 GCP . . . D 4 10.494 43.884 -7.347 1 28.9 ? C6 GCP 203 A 1 
HETATM 27 O O6 GCP . . . D 4 9.52 43.346 -6.786 1 25.68 ? O6 GCP 203 A 1 
HETATM 28 N N1 GCP . . . D 4 10.328 44.664 -8.433 1 31.33 ? N1 GCP 203 A 1 
HETATM 29 C C2 GCP . . . D 4 11.371 45.251 -9.065 1 31.6 ? C2 GCP 203 A 1 
HETATM 30 N N2 GCP . . . D 4 11.128 46.063 -10.119 1 34.13 ? N2 GCP 203 A 1 
HETATM 31 N N3 GCP . . . D 4 12.661 45.055 -8.692 1 29.46 ? N3 GCP 203 A 1 
HETATM 32 C C4 GCP . . . D 4 12.962 44.27 -7.619 1 28.67 ? C4 GCP 203 A 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#