data_6GJ6
#
_model_server_result.job_id            ihVALtR808KMp8E1W1RdBg 
_model_server_result.datetime_utc      '2024-10-15 20:31:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gj6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":204}' 
#
_entry.id    6GJ6 
#
_exptl.entry_id    6GJ6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              321.373 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3~{S})-3-[2-[(dimethylamino)methyl]-1~{H}-indol-3-yl]-5-oxidanyl-2,3-dihydroisoindol-1-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6GJ6 
_cell.length_a            85.89 
_cell.length_b            85.89 
_cell.length_c            47.525 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GJ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 18 A SER 17 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc2 A OG1 THR 36 A THR 35 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc3 B MG MG . A MG 201 1_555 D O2G GCP . A GCP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc4 B MG MG . A MG 201 1_555 D O2B GCP . A GCP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc5 B MG MG . A MG 201 1_555 F O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? 
metalc ? metalc6 B MG MG . A MG 201 1_555 F O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
#
_chem_comp.formula           'C19 H19 N3 O2' 
_chem_comp.formula_weight    321.373 
_chem_comp.id                EZZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3~{S})-3-[2-[(dimethylamino)methyl]-1~{H}-indol-3-yl]-5-oxidanyl-2,3-dihydroisoindol-1-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O22 C3 EZZ sing 83 n n 
C2 C3 EZZ doub 84 n y 
C2 C1 EZZ sing 85 n y 
C3 C4 EZZ sing 86 n y 
C18 C19 EZZ doub 87 n y 
C18 C17 EZZ sing 88 n y 
C19 C16 EZZ sing 89 n y 
C17 C14 EZZ doub 90 n y 
C1 C6 EZZ doub 91 n y 
C4 C5 EZZ doub 92 n y 
C16 C15 EZZ doub 93 n y 
C14 C15 EZZ sing 94 n y 
C14 N13 EZZ sing 95 n y 
C15 C11 EZZ sing 96 n y 
C6 C5 EZZ sing 97 n y 
C6 C9 EZZ sing 98 n n 
C5 C7 EZZ sing 99 n n 
N13 C12 EZZ sing 100 n y 
C11 C12 EZZ doub 101 n y 
C11 C7 EZZ sing 102 n n 
C12 C20 EZZ sing 103 n n 
C9 O10 EZZ doub 104 n n 
C9 N8 EZZ sing 105 n n 
C7 N8 EZZ sing 106 n n 
C20 N21 EZZ sing 107 n n 
N21 C23 EZZ sing 108 n n 
N21 C24 EZZ sing 109 n n 
C4 H1 EZZ sing 110 n n 
C7 H2 EZZ sing 111 n n 
C17 H3 EZZ sing 112 n n 
C20 H4 EZZ sing 113 n n 
C20 H5 EZZ sing 114 n n 
C24 H6 EZZ sing 115 n n 
C24 H7 EZZ sing 116 n n 
C24 H8 EZZ sing 117 n n 
C1 H9 EZZ sing 118 n n 
C16 H10 EZZ sing 119 n n 
C18 H11 EZZ sing 120 n n 
C19 H12 EZZ sing 121 n n 
C2 H13 EZZ sing 122 n n 
C23 H14 EZZ sing 123 n n 
C23 H15 EZZ sing 124 n n 
C23 H16 EZZ sing 125 n n 
N13 H17 EZZ sing 126 n n 
N8 H19 EZZ sing 127 n n 
O22 H20 EZZ sing 128 n n 
#
_atom_sites.entry_id                     6GJ6 
_atom_sites.fract_transf_matrix[1][1]    0.011643 
_atom_sites.fract_transf_matrix[1][2]    0.006722 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013444 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021042 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 201 1 MG MG . 
C 3 NO3 A 1 202 1 NO3 NO3 . 
D 4 GCP A 1 203 1 GCP GCP . 
E 5 EZZ A 1 204 1 EZZ LIG . 
F 6 HOH A 1 301 110 HOH HOH . 
F 6 HOH A 2 302 42 HOH HOH . 
F 6 HOH A 3 303 129 HOH HOH . 
F 6 HOH A 4 304 102 HOH HOH . 
F 6 HOH A 5 305 23 HOH HOH . 
F 6 HOH A 6 306 12 HOH HOH . 
F 6 HOH A 7 307 108 HOH HOH . 
F 6 HOH A 8 308 130 HOH HOH . 
F 6 HOH A 9 309 64 HOH HOH . 
F 6 HOH A 10 310 40 HOH HOH . 
F 6 HOH A 11 311 105 HOH HOH . 
F 6 HOH A 12 312 111 HOH HOH . 
F 6 HOH A 13 313 106 HOH HOH . 
F 6 HOH A 14 314 24 HOH HOH . 
F 6 HOH A 15 315 6 HOH HOH . 
F 6 HOH A 16 316 29 HOH HOH . 
F 6 HOH A 17 317 124 HOH HOH . 
F 6 HOH A 18 318 14 HOH HOH . 
F 6 HOH A 19 319 57 HOH HOH . 
F 6 HOH A 20 320 20 HOH HOH . 
F 6 HOH A 21 321 4 HOH HOH . 
F 6 HOH A 22 322 120 HOH HOH . 
F 6 HOH A 23 323 1 HOH HOH . 
F 6 HOH A 24 324 47 HOH HOH . 
F 6 HOH A 25 325 11 HOH HOH . 
F 6 HOH A 26 326 164 HOH HOH . 
F 6 HOH A 27 327 8 HOH HOH . 
F 6 HOH A 28 328 16 HOH HOH . 
F 6 HOH A 29 329 39 HOH HOH . 
F 6 HOH A 30 330 46 HOH HOH . 
F 6 HOH A 31 331 32 HOH HOH . 
F 6 HOH A 32 332 139 HOH HOH . 
F 6 HOH A 33 333 69 HOH HOH . 
F 6 HOH A 34 334 112 HOH HOH . 
F 6 HOH A 35 335 127 HOH HOH . 
F 6 HOH A 36 336 48 HOH HOH . 
F 6 HOH A 37 337 18 HOH HOH . 
F 6 HOH A 38 338 103 HOH HOH . 
F 6 HOH A 39 339 19 HOH HOH . 
F 6 HOH A 40 340 163 HOH HOH . 
F 6 HOH A 41 341 109 HOH HOH . 
F 6 HOH A 42 342 121 HOH HOH . 
F 6 HOH A 43 343 53 HOH HOH . 
F 6 HOH A 44 344 145 HOH HOH . 
F 6 HOH A 45 345 151 HOH HOH . 
F 6 HOH A 46 346 34 HOH HOH . 
F 6 HOH A 47 347 99 HOH HOH . 
F 6 HOH A 48 348 134 HOH HOH . 
F 6 HOH A 49 349 51 HOH HOH . 
F 6 HOH A 50 350 155 HOH HOH . 
F 6 HOH A 51 351 7 HOH HOH . 
F 6 HOH A 52 352 66 HOH HOH . 
F 6 HOH A 53 353 10 HOH HOH . 
F 6 HOH A 54 354 58 HOH HOH . 
F 6 HOH A 55 355 161 HOH HOH . 
F 6 HOH A 56 356 33 HOH HOH . 
F 6 HOH A 57 357 3 HOH HOH . 
F 6 HOH A 58 358 17 HOH HOH . 
F 6 HOH A 59 359 90 HOH HOH . 
F 6 HOH A 60 360 30 HOH HOH . 
F 6 HOH A 61 361 27 HOH HOH . 
F 6 HOH A 62 362 49 HOH HOH . 
F 6 HOH A 63 363 31 HOH HOH . 
F 6 HOH A 64 364 36 HOH HOH . 
F 6 HOH A 65 365 44 HOH HOH . 
F 6 HOH A 66 366 125 HOH HOH . 
F 6 HOH A 67 367 15 HOH HOH . 
F 6 HOH A 68 368 52 HOH HOH . 
F 6 HOH A 69 369 178 HOH HOH . 
F 6 HOH A 70 370 67 HOH HOH . 
F 6 HOH A 71 371 115 HOH HOH . 
F 6 HOH A 72 372 13 HOH HOH . 
F 6 HOH A 73 373 45 HOH HOH . 
F 6 HOH A 74 374 28 HOH HOH . 
F 6 HOH A 75 375 5 HOH HOH . 
F 6 HOH A 76 376 156 HOH HOH . 
F 6 HOH A 77 377 141 HOH HOH . 
F 6 HOH A 78 378 41 HOH HOH . 
F 6 HOH A 79 379 21 HOH HOH . 
F 6 HOH A 80 380 54 HOH HOH . 
F 6 HOH A 81 381 154 HOH HOH . 
F 6 HOH A 82 382 117 HOH HOH . 
F 6 HOH A 83 383 38 HOH HOH . 
F 6 HOH A 84 384 83 HOH HOH . 
F 6 HOH A 85 385 55 HOH HOH . 
F 6 HOH A 86 386 59 HOH HOH . 
F 6 HOH A 87 387 60 HOH HOH . 
F 6 HOH A 88 388 166 HOH HOH . 
F 6 HOH A 89 389 9 HOH HOH . 
F 6 HOH A 90 390 126 HOH HOH . 
F 6 HOH A 91 391 22 HOH HOH . 
F 6 HOH A 92 392 123 HOH HOH . 
F 6 HOH A 93 393 174 HOH HOH . 
F 6 HOH A 94 394 150 HOH HOH . 
F 6 HOH A 95 395 70 HOH HOH . 
F 6 HOH A 96 396 189 HOH HOH . 
F 6 HOH A 97 397 26 HOH HOH . 
F 6 HOH A 98 398 25 HOH HOH . 
F 6 HOH A 99 399 148 HOH HOH . 
F 6 HOH A 100 400 89 HOH HOH . 
F 6 HOH A 101 401 191 HOH HOH . 
F 6 HOH A 102 402 188 HOH HOH . 
F 6 HOH A 103 403 91 HOH HOH . 
F 6 HOH A 104 404 147 HOH HOH . 
F 6 HOH A 105 405 37 HOH HOH . 
F 6 HOH A 106 406 131 HOH HOH . 
F 6 HOH A 107 407 114 HOH HOH . 
F 6 HOH A 108 408 179 HOH HOH . 
F 6 HOH A 109 409 68 HOH HOH . 
F 6 HOH A 110 410 85 HOH HOH . 
F 6 HOH A 111 411 192 HOH HOH . 
F 6 HOH A 112 412 118 HOH HOH . 
F 6 HOH A 113 413 61 HOH HOH . 
F 6 HOH A 114 414 100 HOH HOH . 
F 6 HOH A 115 415 65 HOH HOH . 
F 6 HOH A 116 416 56 HOH HOH . 
F 6 HOH A 117 417 159 HOH HOH . 
F 6 HOH A 118 418 122 HOH HOH . 
F 6 HOH A 119 419 88 HOH HOH . 
F 6 HOH A 120 420 162 HOH HOH . 
F 6 HOH A 121 421 180 HOH HOH . 
F 6 HOH A 122 422 160 HOH HOH . 
F 6 HOH A 123 423 140 HOH HOH . 
F 6 HOH A 124 424 87 HOH HOH . 
F 6 HOH A 125 425 144 HOH HOH . 
F 6 HOH A 126 426 165 HOH HOH . 
F 6 HOH A 127 427 153 HOH HOH . 
F 6 HOH A 128 428 86 HOH HOH . 
F 6 HOH A 129 429 50 HOH HOH . 
F 6 HOH A 130 430 190 HOH HOH . 
F 6 HOH A 131 431 181 HOH HOH . 
F 6 HOH A 132 432 167 HOH HOH . 
F 6 HOH A 133 433 182 HOH HOH . 
F 6 HOH A 134 434 97 HOH HOH . 
F 6 HOH A 135 435 186 HOH HOH . 
F 6 HOH A 136 436 98 HOH HOH . 
F 6 HOH A 137 437 187 HOH HOH . 
F 6 HOH A 138 438 143 HOH HOH . 
F 6 HOH A 139 439 185 HOH HOH . 
F 6 HOH A 140 440 183 HOH HOH . 
F 6 HOH A 141 441 104 HOH HOH . 
F 6 HOH A 142 442 184 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 EZZ . . . E 5 20.599 31.984 11.636 1 27.8 ? C4 EZZ 204 A 1 
HETATM 2 C C5 EZZ . . . E 5 19.947 31.174 12.56 1 28.63 ? C5 EZZ 204 A 1 
HETATM 3 C C6 EZZ . . . E 5 20.144 29.805 12.535 1 29.27 ? C6 EZZ 204 A 1 
HETATM 4 C C7 EZZ . . . E 5 18.988 31.525 13.656 1 29.51 ? C7 EZZ 204 A 1 
HETATM 5 C C15 EZZ . . . E 5 16.701 31.665 12.339 1 28.64 ? C15 EZZ 204 A 1 
HETATM 6 C C17 EZZ . . . E 5 14.554 32.441 11.449 1 28.21 ? C17 EZZ 204 A 1 
HETATM 7 C C20 EZZ . . . E 5 17.974 34.465 14.452 1 30 ? C20 EZZ 204 A 1 
HETATM 8 C C24 EZZ . . . E 5 17.23 33.411 16.497 1 30.52 ? C24 EZZ 204 A 1 
HETATM 9 C C1 EZZ . . . E 5 20.954 29.218 11.564 1 29.47 ? C1 EZZ 204 A 1 
HETATM 10 C C11 EZZ . . . E 5 17.733 32.23 13.176 1 30.26 ? C11 EZZ 204 A 1 
HETATM 11 C C12 EZZ . . . E 5 17.325 33.489 13.516 1 30.7 ? C12 EZZ 204 A 1 
HETATM 12 C C14 EZZ . . . E 5 15.699 32.649 12.215 1 28.58 ? C14 EZZ 204 A 1 
HETATM 13 C C16 EZZ . . . E 5 16.533 30.453 11.669 1 27.11 ? C16 EZZ 204 A 1 
HETATM 14 C C18 EZZ . . . E 5 14.413 31.222 10.794 1 27.22 ? C18 EZZ 204 A 1 
HETATM 15 C C19 EZZ . . . E 5 15.38 30.231 10.92 1 28.28 ? C19 EZZ 204 A 1 
HETATM 16 C C2 EZZ . . . E 5 21.586 30.022 10.63 1 29.42 ? C2 EZZ 204 A 1 
HETATM 17 C C23 EZZ . . . E 5 17.805 35.74 16.49 1 29.62 ? C23 EZZ 204 A 1 
HETATM 18 C C3 EZZ . . . E 5 21.408 31.402 10.669 1 29.98 ? C3 EZZ 204 A 1 
HETATM 19 C C9 EZZ . . . E 5 19.352 29.202 13.625 1 29.37 ? C9 EZZ 204 A 1 
HETATM 20 N N13 EZZ . . . E 5 16.098 33.752 12.948 1 27.5 ? N13 EZZ 204 A 1 
HETATM 21 N N21 EZZ . . . E 5 17.236 34.646 15.707 1 30.15 ? N21 EZZ 204 A 1 
HETATM 22 N N8 EZZ . . . E 5 18.712 30.215 14.234 1 29.64 ? N8 EZZ 204 A 1 
HETATM 23 O O10 EZZ . . . E 5 19.256 28.013 13.909 1 31.05 ? O10 EZZ 204 A 1 
HETATM 24 O O22 EZZ . . . E 5 22.056 32.208 9.794 1 31.36 ? O22 EZZ 204 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           24 
#