data_6GJO # _model_server_result.job_id gylv2aQzzqYEw-Nixyvh1A _model_server_result.datetime_utc '2024-11-21 17:53:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gjo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 6GJO # _exptl.entry_id 6GJO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 375.464 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3~{Z})-5-ethanoyl-3-[[(1-methylpiperidin-4-yl)amino]-phenyl-methylidene]-1~{H}-indol-2-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 77.51 _cell.angle_beta 77.56 _cell.angle_gamma 89.21 _cell.entry_id 6GJO _cell.length_a 63.712 _cell.length_b 67.484 _cell.length_c 67.787 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GJO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C23 H25 N3 O2' _chem_comp.formula_weight 375.464 _chem_comp.id F1B _chem_comp.mon_nstd_flag . _chem_comp.name (3~{Z})-5-ethanoyl-3-[[(1-methylpiperidin-4-yl)amino]-phenyl-methylidene]-1~{H}-indol-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 N27 F1B sing 83 n n C26 N27 F1B sing 84 n n C26 C21 F1B sing 85 n n N27 C25 F1B sing 86 n n C18 C24 F1B doub 87 n y C18 C13 F1B sing 88 n y C24 C19 F1B sing 89 n y C21 C15 F1B sing 90 n n C25 C20 F1B sing 91 n n C13 C7 F1B doub 92 n y C15 C20 F1B sing 93 n n C15 N8 F1B sing 94 n n C19 C14 F1B doub 95 n y C7 C14 F1B sing 96 n y C7 C3 F1B sing 97 n n N8 C3 F1B sing 98 n n C3 C1 F1B doub 99 z n C22 C17 F1B sing 100 n n C1 C2 F1B sing 101 n n C1 C4 F1B sing 102 n n C6 C2 F1B doub 103 n y C6 C12 F1B sing 104 n y C2 C5 F1B sing 105 n y O10 C4 F1B doub 106 n n C17 C12 F1B sing 107 n n C17 O23 F1B doub 108 n n C4 N9 F1B sing 109 n n C12 C16 F1B doub 110 n y C5 N9 F1B sing 111 n n C5 C11 F1B doub 112 n y C16 C11 F1B sing 113 n y C6 H1 F1B sing 114 n n C13 H2 F1B sing 115 n n C15 H3 F1B sing 116 n n C20 H4 F1B sing 117 n n C20 H5 F1B sing 118 n n C21 H6 F1B sing 119 n n C21 H7 F1B sing 120 n n C22 H8 F1B sing 121 n n C22 H9 F1B sing 122 n n C22 H10 F1B sing 123 n n C24 H11 F1B sing 124 n n C26 H12 F1B sing 125 n n C26 H13 F1B sing 126 n n C28 H14 F1B sing 127 n n C28 H15 F1B sing 128 n n C28 H16 F1B sing 129 n n C16 H17 F1B sing 130 n n C11 H18 F1B sing 131 n n N9 H19 F1B sing 132 n n C18 H21 F1B sing 133 n n C19 H22 F1B sing 134 n n C14 H23 F1B sing 135 n n C25 H24 F1B sing 136 n n C25 H25 F1B sing 137 n n N8 H20 F1B sing 138 n n # _atom_sites.entry_id 6GJO _atom_sites.fract_transf_matrix[1][1] 0.015696 _atom_sites.fract_transf_matrix[1][2] -0.000216 _atom_sites.fract_transf_matrix[1][3] -0.0035 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01482 _atom_sites.fract_transf_matrix[2][3] -0.003317 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 F1B A 1 501 386 F1B LIG . D 2 F1B B 1 501 386 F1B LIG . E 3 HOH A 1 601 33 HOH HOH . E 3 HOH A 2 602 16 HOH HOH . E 3 HOH A 3 603 28 HOH HOH . E 3 HOH A 4 604 12 HOH HOH . E 3 HOH A 5 605 14 HOH HOH . E 3 HOH A 6 606 11 HOH HOH . E 3 HOH A 7 607 18 HOH HOH . E 3 HOH A 8 608 27 HOH HOH . E 3 HOH A 9 609 36 HOH HOH . E 3 HOH A 10 610 5 HOH HOH . E 3 HOH A 11 611 41 HOH HOH . E 3 HOH A 12 612 56 HOH HOH . E 3 HOH A 13 613 1 HOH HOH . E 3 HOH A 14 614 44 HOH HOH . E 3 HOH A 15 615 13 HOH HOH . E 3 HOH A 16 616 61 HOH HOH . E 3 HOH A 17 617 58 HOH HOH . E 3 HOH A 18 618 9 HOH HOH . E 3 HOH A 19 619 48 HOH HOH . E 3 HOH A 20 620 15 HOH HOH . E 3 HOH A 21 621 22 HOH HOH . E 3 HOH A 22 622 52 HOH HOH . E 3 HOH A 23 623 60 HOH HOH . E 3 HOH A 24 624 53 HOH HOH . E 3 HOH A 25 625 4 HOH HOH . E 3 HOH A 26 626 50 HOH HOH . E 3 HOH A 27 627 2 HOH HOH . E 3 HOH A 28 628 59 HOH HOH . E 3 HOH A 29 629 29 HOH HOH . F 3 HOH B 1 601 57 HOH HOH . F 3 HOH B 2 602 19 HOH HOH . F 3 HOH B 3 603 30 HOH HOH . F 3 HOH B 4 604 34 HOH HOH . F 3 HOH B 5 605 31 HOH HOH . F 3 HOH B 6 606 45 HOH HOH . F 3 HOH B 7 607 7 HOH HOH . F 3 HOH B 8 608 35 HOH HOH . F 3 HOH B 9 609 32 HOH HOH . F 3 HOH B 10 610 40 HOH HOH . F 3 HOH B 11 611 24 HOH HOH . F 3 HOH B 12 612 21 HOH HOH . F 3 HOH B 13 613 47 HOH HOH . F 3 HOH B 14 614 38 HOH HOH . F 3 HOH B 15 615 42 HOH HOH . F 3 HOH B 16 616 23 HOH HOH . F 3 HOH B 17 617 3 HOH HOH . F 3 HOH B 18 618 26 HOH HOH . F 3 HOH B 19 619 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 F1B . . . D 2 -0.067 -15.442 -12.809 1 10.83 ? C4 F1B 501 B 1 HETATM 2 C C5 F1B . . . D 2 -0.531 -16.169 -10.709 1 11.42 ? C5 F1B 501 B 1 HETATM 3 C C6 F1B . . . D 2 -0.207 -14.263 -9.264 1 11.94 ? C6 F1B 501 B 1 HETATM 4 C C7 F1B . . . D 2 0.652 -11.899 -11.335 1 8.1 ? C7 F1B 501 B 1 HETATM 5 C C13 F1B . . . D 2 -0.446 -11.092 -11.025 1 6.96 ? C13 F1B 501 B 1 HETATM 6 C C15 F1B . . . D 2 1.158 -11.569 -14.255 1 12.31 ? C15 F1B 501 B 1 HETATM 7 C C17 F1B . . . D 2 -0.574 -14.453 -6.798 1 11.57 ? C17 F1B 501 B 1 HETATM 8 C C20 F1B . . . D 2 2.43 -11.826 -15.054 1 15.22 ? C20 F1B 501 B 1 HETATM 9 C C21 F1B . . . D 2 0.052 -11.02 -15.149 1 10.72 ? C21 F1B 501 B 1 HETATM 10 C C22 F1B . . . D 2 -0.205 -13.014 -6.618 1 11.95 ? C22 F1B 501 B 1 HETATM 11 C C24 F1B . . . D 2 0.893 -9.812 -9.492 1 8.72 ? C24 F1B 501 B 1 HETATM 12 C C26 F1B . . . D 2 0.529 -9.8 -15.941 1 13.41 ? C26 F1B 501 B 1 HETATM 13 C C28 F1B . . . D 2 2.15 -9.038 -17.64 1 16.57 ? C28 F1B 501 B 1 HETATM 14 O O23 F1B . . . D 2 -0.897 -15.131 -5.832 1 11.21 ? O23 F1B 501 B 1 HETATM 15 C C12 F1B . . . D 2 -0.552 -15.053 -8.167 1 12.32 ? C12 F1B 501 B 1 HETATM 16 C C16 F1B . . . D 2 -0.892 -16.398 -8.358 1 12.52 ? C16 F1B 501 B 1 HETATM 17 C C11 F1B . . . D 2 -0.881 -16.968 -9.624 1 11.7 ? C11 F1B 501 B 1 HETATM 18 N N9 F1B . . . D 2 -0.44 -16.504 -12.054 1 11.57 ? N9 F1B 501 B 1 HETATM 19 O O10 F1B . . . D 2 0.083 -15.45 -14.029 1 10.8 ? O10 F1B 501 B 1 HETATM 20 C C2 F1B . . . D 2 -0.192 -14.81 -10.549 1 11.08 ? C2 F1B 501 B 1 HETATM 21 C C1 F1B . . . D 2 0.116 -14.287 -11.872 1 9.83 ? C1 F1B 501 B 1 HETATM 22 C C3 F1B . . . D 2 0.515 -13.022 -12.287 1 8.54 ? C3 F1B 501 B 1 HETATM 23 C C18 F1B . . . D 2 -0.319 -10.047 -10.12 1 6.95 ? C18 F1B 501 B 1 HETATM 24 C C19 F1B . . . D 2 1.982 -10.621 -9.774 1 11.89 ? C19 F1B 501 B 1 HETATM 25 C C14 F1B . . . D 2 1.864 -11.665 -10.681 1 11.41 ? C14 F1B 501 B 1 HETATM 26 N N8 F1B . . . D 2 0.719 -12.793 -13.585 1 9.68 ? N8 F1B 501 B 1 HETATM 27 C C25 F1B . . . D 2 2.852 -10.593 -15.856 1 16.25 ? C25 F1B 501 B 1 HETATM 28 N N27 F1B . . . D 2 1.735 -10.159 -16.752 1 15.62 ? N27 F1B 501 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 61 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 927 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #