data_6GJU # _model_server_result.job_id MoYoW3wo1jfKJTOcIMJdqQ _model_server_result.datetime_utc '2024-11-13 18:01:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gju # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 6GJU # _exptl.entry_id 6GJU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GJU _cell.length_a 38.68 _cell.length_b 135.78 _cell.length_c 190.65 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GJU _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 22 B CYS 22 1_555 B SG CYS 94 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf2 C SG CYS 22 C CYS 22 1_555 C SG CYS 95 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6GJU _atom_sites.fract_transf_matrix[1][1] 0.025853 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL A 1 701 1 GOL GOL . E 5 PEG A 1 702 1 PEG PEG . F 6 HOH A 1 801 15 HOH HOH . F 6 HOH A 2 802 45 HOH HOH . F 6 HOH A 3 803 60 HOH HOH . F 6 HOH A 4 804 68 HOH HOH . F 6 HOH A 5 805 71 HOH HOH . F 6 HOH A 6 806 6 HOH HOH . F 6 HOH A 7 807 63 HOH HOH . F 6 HOH A 8 808 5 HOH HOH . F 6 HOH A 9 809 3 HOH HOH . F 6 HOH A 10 810 76 HOH HOH . F 6 HOH A 11 811 22 HOH HOH . F 6 HOH A 12 812 23 HOH HOH . F 6 HOH A 13 813 24 HOH HOH . F 6 HOH A 14 814 59 HOH HOH . F 6 HOH A 15 815 53 HOH HOH . F 6 HOH A 16 816 37 HOH HOH . F 6 HOH A 17 817 36 HOH HOH . F 6 HOH A 18 818 27 HOH HOH . F 6 HOH A 19 819 10 HOH HOH . F 6 HOH A 20 820 7 HOH HOH . F 6 HOH A 21 821 17 HOH HOH . F 6 HOH A 22 822 48 HOH HOH . F 6 HOH A 23 823 31 HOH HOH . F 6 HOH A 24 824 8 HOH HOH . F 6 HOH A 25 825 29 HOH HOH . F 6 HOH A 26 826 20 HOH HOH . F 6 HOH A 27 827 33 HOH HOH . F 6 HOH A 28 828 73 HOH HOH . F 6 HOH A 29 829 74 HOH HOH . F 6 HOH A 30 830 67 HOH HOH . F 6 HOH A 31 831 79 HOH HOH . F 6 HOH A 32 832 30 HOH HOH . F 6 HOH A 33 833 80 HOH HOH . F 6 HOH A 34 834 28 HOH HOH . F 6 HOH A 35 835 42 HOH HOH . F 6 HOH A 36 836 82 HOH HOH . F 6 HOH A 37 837 57 HOH HOH . G 6 HOH B 1 201 86 HOH HOH . G 6 HOH B 2 202 2 HOH HOH . G 6 HOH B 3 203 75 HOH HOH . G 6 HOH B 4 204 35 HOH HOH . G 6 HOH B 5 205 54 HOH HOH . G 6 HOH B 6 206 43 HOH HOH . G 6 HOH B 7 207 14 HOH HOH . G 6 HOH B 8 208 62 HOH HOH . G 6 HOH B 9 209 52 HOH HOH . G 6 HOH B 10 210 81 HOH HOH . G 6 HOH B 11 211 41 HOH HOH . G 6 HOH B 12 212 1 HOH HOH . G 6 HOH B 13 213 21 HOH HOH . G 6 HOH B 14 214 44 HOH HOH . G 6 HOH B 15 215 11 HOH HOH . G 6 HOH B 16 216 19 HOH HOH . G 6 HOH B 17 217 13 HOH HOH . G 6 HOH B 18 218 12 HOH HOH . G 6 HOH B 19 219 9 HOH HOH . G 6 HOH B 20 220 4 HOH HOH . G 6 HOH B 21 221 16 HOH HOH . G 6 HOH B 22 222 46 HOH HOH . G 6 HOH B 23 223 32 HOH HOH . G 6 HOH B 24 224 58 HOH HOH . G 6 HOH B 25 225 26 HOH HOH . G 6 HOH B 26 226 70 HOH HOH . G 6 HOH B 27 227 39 HOH HOH . G 6 HOH B 28 228 34 HOH HOH . G 6 HOH B 29 229 49 HOH HOH . H 6 HOH C 1 201 84 HOH HOH . H 6 HOH C 2 202 83 HOH HOH . H 6 HOH C 3 203 85 HOH HOH . H 6 HOH C 4 204 56 HOH HOH . H 6 HOH C 5 205 69 HOH HOH . H 6 HOH C 6 206 51 HOH HOH . H 6 HOH C 7 207 55 HOH HOH . H 6 HOH C 8 208 38 HOH HOH . H 6 HOH C 9 209 72 HOH HOH . H 6 HOH C 10 210 64 HOH HOH . H 6 HOH C 11 211 40 HOH HOH . H 6 HOH C 12 212 18 HOH HOH . H 6 HOH C 13 213 88 HOH HOH . H 6 HOH C 14 214 77 HOH HOH . H 6 HOH C 15 215 78 HOH HOH . H 6 HOH C 16 216 61 HOH HOH . H 6 HOH C 17 217 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 2.602 -2.008 29.693 1 94.63 ? C1 GOL 701 A 1 HETATM 2 O O1 GOL . . . D 4 1.585 -2.389 30.606 1 92.85 ? O1 GOL 701 A 1 HETATM 3 C C2 GOL . . . D 4 3.309 -0.777 30.222 1 97.37 ? C2 GOL 701 A 1 HETATM 4 O O2 GOL . . . D 4 4.71 -0.979 30.056 1 97.43 ? O2 GOL 701 A 1 HETATM 5 C C3 GOL . . . D 4 2.848 0.456 29.449 1 99.03 ? C3 GOL 701 A 1 HETATM 6 O O3 GOL . . . D 4 3.457 1.659 29.929 1 99.51 ? O3 GOL 701 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #